RNA id: XM_021604553.2


Basic Information

Item Value
RNA id XM_021604553.2
length 3224
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110524694
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84158137 ~ 84173653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAAGGGAGGAGCGCAGTCGAGGGGCAAAACCGTCTCCGTGCGTCAGTATGCGTTTATAGCAAGCATGGCAGGCGACAGCGAGACAAGACTGGACAGTCAAGTCGAAAACGTTACACGGCAACCTTTCCTCATCGGGGTAGCAGGAGGGACTGCCAGCGGCAAGAGTTCTGTCTGCGGTAAGATCATGGAGCTGCTTGGCCAGAACAAGATTGACCATCACCAGCGCCAGGTGGCCATTCTCAGCCAAGACAGCTTCTACAGGGTCCTTACTCCGGACCAGAAGGCCAAGGCACTGAAGGGACAGTTCAACTTCGACCACCCAGaTGCATTTGACAACGAGCTCATCGTGAAAACATTGTGGGACATCTTGGAGGGCAAAACAGTGCAAATCCCAGTGTATGACTTTGTCACCCATTCCAGGAAGGAGGAGGTGGTAATGGTGTACCCAGCAGACGTGGTGCTGTTCGAGGGCATCTTGATGTTCTACTCTCAGGAGATCAGGGACCTGTTCCAGATGAAGCTGTTTGTggacacagacgcagacacacggCTCTCACGCAGAGTGCTCAGAGACATCGGCGAGCGAGGTAGGGATCTGGAGCAGGTGCTAACGCAATACATCACCTTTGTTAAGCCTGCCTTTGAGGAGTTCTGTCTGCCAACCAAGAAGTGCGCTGATGTGATCATTCCCAGAGGAGCAGATAATCTTGTTGCCATAAACCTTATAGTTCAGCACATCCAGGACATTCTGAACGGTGGTCTGACCAAACGCCTGAACAGCAGCCTTAATGGTTACGGTACTCCCCGTAAACGGCAGGTGTCTGAGTCTAGCAGTCGGCCCCACTGACTGCACCGTCCCTCTCTCAGCGCCAGGGATcgatggtagaggagaggagggctcaCCTGTACATACCTACCTACTGCCTGTCCGCAACACTGTATTTAAAAaccagaatgatttatttctctAGCAAGAAGCTGCAAGACCTTCATTTGATATCGTTTTTTTTGTACTGGAGGATGACATTTTtgaaaagggaggaagaggattaGCTGTTTGTTTTGGAACTGTTTCAGGTCAAAGGTGCAgcagttattttatttatttatctatttttattATTTCTTCTGGATTAAATTTGAGTTTACAGATGTGAATAAATAAGGAGGAAGATGGTTCATCTGGGTTGAGCTTGAGACGTTGGTGTGCGTTCAGTGGTCAGTGCATTTTTGATTGGTCAtgtctgtctttactgttgttgtatTGGAATGGAAGGGAGGACGCGTGACAGATTTGATATGTTAGAGGGaactatctcacacacacacaccattatttTGGAAACTATCCAAGAACCAAGATGCAAAACTAAATACAGGACATGTGCCTGCCATACATAGTACTGAGCCTGCTCTATGTATAGATGGAGATCTTTTCACTTGTCAAGGTACTGTAGTCCCTCGTTACACATTCTGACGCACCATAGAGAGACTCCGTATGAGGTGAAGTGTTAGTAACTGCTACAAGCATGCTCTTATTGAGTTAAAGGGAACATTTTCTCAGGCCCTACACAGATTATCTGCCTTTGCTGACCAATCCAGTGGGTCAATGCAACTTCGTTGTCTCAATCTAAAAAGAATACTGAAATACTTGACTTTACAAATCAAAATGGTGTTCGTAGTTTGTACATAATGTATTTCTTATTATTTACTCTATTGATGTTGCTCGTTTTCAGTAATTTGAGTTTCACAGTATTTGCTTGTTACCATTCATCTTGAACAAACAACCTGAATTTGAGAACATCAAAACTGAGACTGTCTTTTTCGTCAATCAATCTTTACCTCGGCCAGTTTTGTGTATGGGGACTGACAACCCCACCCAAAAAATGAAGTGTTCTGTACTTGTGCCCATGGCCCCTCTTTTAAAGCCCTAGACAGGGGAGTTTGTAAAGCCCCCATGTCTATTGAATTCTTTGTGGTTCCaactcaactttttttcattaataaaagctAATGCTCTTGAAGGATGAGATCACTGCAACTGCCTCTTTTTGAACAGCTAACATTTGATAGCAATGTTTAGGCCAaggctatatatactgtaggttgttCTGAATTGCAGGTTAATTTGAGATCAATTTTCACTTAAATAGGACATGATCTCCATCTTATTTTCTACGTTAGTAACAATTCACCCTTCAAGCATTAGTACCTTTCATTGCTCTTTACTGCTGCTATTAAACAGTGTAGTTCATCAATGTAAAActcctgttttttgttttttttctattcTTATTTTCTATAATTTTGCATGAATTTAACATGTACCCAGAACATTTTCCTTTGGTATTAAACTCTCCGTTAATTAATTTAGTTTTATTCTCATTCAATTGCTCCATCGTGTTTGTTTATTcacattaaataaaaaatatactgcAATATTTCCAGACTGATTAGAAGGGTGAGATTAGGGTCTTATGAACACTCCCTCACTGACTGACATGCTATTAGTGTTCTACTCAAGGTTGTACTGCATTGCATAGGGTAGCCTAAAATCACAATAGATTGTTTTGCTTTCAGAAATATATGGGTACTAAACTCCTGACTGCTGTGCTATGTTTCCTACCTCTTTATGATACCTGTATGCAAAGTGTATACTGTAGTTTTGTTTACATTTCGAGGGCCAATGATGGGCATGTCACAATGTTGAGACAGCCACCCACATGAGTGTCGTCCGCAGTCCATCCGTGCATCATCATACCCTTTGTTTATTGGCTTCGGATTGATCGATTATTGAAATGAGAAATGGTTTCTAAAGTAATGTATGAGCATACAATCGGACTTCTGCAATTGCCGTACATAAAGGCATGAATGTTGACTCCATGATTAGGCTATCTACTTTGTGAGATGTAGAACTAGAGAGTGAATTGATCGTTAGAATGTCAGCTCAGGAAGTTGAGAGATTTTGAACATGAATATAACCATGAACACTAGCAATACCATGCCTGTCTAAAATGTAGAGGAAATGCCCTAACTTGAATTCAATGTACATGACCTTTCATTTCAAAGGCCTTCAAAATGCCAGTCAAGCAATGCCTATCATAGGCAGCCATCTAGCAAACATTCAGTAACAACTGCATTCCTTTGCAAAAAATGTAATATGGTCCAAAGGCTGTTGATGTGGATTATCTGTATTTCAGTCATTAAAATGTTGCTTTGTG

Function

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508332 lncRNA downstream 17037 84135924 ~ 84141100 (-) True G449145
TU508326 lncRNA downstream 29257 84128552 ~ 84128880 (-) True G449141
TU508257 lncRNA downstream 67261 84089855 ~ 84090876 (-) True G449074
TU507556 lncRNA downstream 250066 83907783 ~ 83908071 (-) True G448445
TU507526 lncRNA downstream 261302 83896496 ~ 83896835 (-) True LOC110522893
TU508356 lncRNA upstream 6224 84179877 ~ 84208263 (-) True G449168
TU508375 lncRNA upstream 14086 84187739 ~ 84220997 (-) True G449186
TU508367 lncRNA upstream 32631 84206284 ~ 84207157 (-) True G449178
TU508374 lncRNA upstream 37156 84210809 ~ 84211925 (-) True G449185
TU508366 lncRNA upstream 44300 84217953 ~ 84219181 (-) True G449177
XM_021604552.2 mRNA downstream 773 84151778 ~ 84157364 (-) True magoh
XM_021604549.2 mRNA downstream 19309 84121349 ~ 84138828 (-) True scp2b
XM_036978572.1 mRNA downstream 37794 84066174 ~ 84120343 (-) False podn
XR_002473634.2 mRNA upstream 62032 84235685 ~ 84238143 (-) True LOC110524696
trnar-acg-4 mRNA upstream 136277 84309930 ~ 84310002 (-) True trnar-acg-4
XR_005051593.1 mRNA upstream 150327 84323980 ~ 84326565 (-) False LOC110522894
XM_036978584.1 mRNA upstream 153178 84326831 ~ 84348966 (-) False LOC110524701
XM_021604566.2 mRNA upstream 153178 84326831 ~ 84349221 (-) False LOC110524701
TU507563 other downstream 241496 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 284829 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 637864 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 838422 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 1169135 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1272028 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1313189 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1704080 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2375185 86548838 ~ 86549878 (-) True G451271

Expression Profile