RNA id: XR_002473634.2


Basic Information

Item Value
RNA id XR_002473634.2
length 944
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110524696
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84235685 ~ 84238143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGCCCACTGTATGCGCTTTCAGTAGAAGTCAGAAGTAGGCCTATAATGAACGGTCCAGACAGTAGAAATCTGCATACATTACGGAGATGGTCAACCAGATTTGaacacaatcagatcacaatgcgACTTTTATGCGTCTACACCCGTGTTTTCAATGCGATATTTGTATTCTGATGGCAGAAATCGCAAAAAAATTCAAGATTAGACACGACCTGAGCAGCGACAATCAAGCGAACAAGTTTTTCGCACTTGATCGTTTGAGATCCACACATCCATAATTAGTTGTTAAACACCACTCCTGATCCGGGAATCAGATTGGCTATTTGCACTTCagggaaacactgtcactactgCTAAGGAATGCATCCTAGTCCATCTACTATCCAGCTTGTTCTCACCTCAGTGTCAGCAGTCTTGAACCGGGTGCGAGGATTCTGTGGCCATTATTGGAGACGTTACACCTCAGAAGAGTATACGTTATCTTGTCCAGTAAGAGAAACCCAACCAGCACCTCGCTCCAGCTCTGTGAGACCCTGGGTTTGGGATGTTCATCATGACCTGGCCCCGGCCTATGGGAATTCCAATGACCTGCACTGAAGAGAAAATGTGAAAGGCTCTTCTTTACTCGGTTTTCATTTTTGTTTATACCCCGTTCTCGGGGTATACTGGTAGATGATTGGTCTGTTTCAGCCAGATCCTGTTGAGCTCTTGCCAAATAAAACCTACATATAACTCATGAAACCAGGGTATGTACAGTAAGTCTTGTGTATAATAAATGATATTTAATGAAATGTTTGTCTGGCTAATATCTATGGGTTGGTGTCAGTAGGTCGTCTTAGCTGTAAAAGTCACAACCTACCTCTTTACCTCTGAAGTGTACGTGCATGGTAATCATTATTCCATCCAGCTTTTAACTTCACATCTTAGAATCTGTGGTGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508371 lncRNA downstream 3005 84230646 ~ 84232680 (-) True G449182
TU508375 lncRNA downstream 14688 84187739 ~ 84220997 (-) True G449186
TU508366 lncRNA downstream 16504 84217953 ~ 84219181 (-) True G449177
TU508374 lncRNA downstream 23760 84210809 ~ 84211925 (-) True G449185
TU508356 lncRNA downstream 27422 84179877 ~ 84208263 (-) True G449168
TU508413 lncRNA upstream 30542 84268685 ~ 84268906 (-) True G449224
TU508414 lncRNA upstream 31249 84269392 ~ 84269615 (-) True G449225
TU508417 lncRNA upstream 33503 84271646 ~ 84271980 (-) True G449228
TU508418 lncRNA upstream 34071 84272214 ~ 84273173 (-) True G449229
TU508423 lncRNA upstream 44164 84282307 ~ 84282698 (-) True G449234
XM_021604553.2 mRNA downstream 62032 84158137 ~ 84173653 (-) True LOC110524694
XM_021604552.2 mRNA downstream 78321 84151778 ~ 84157364 (-) True magoh
XM_021604549.2 mRNA downstream 96857 84121349 ~ 84138828 (-) True scp2b
XM_036978573.1 mRNA downstream 136723 84067536 ~ 84098962 (-) True podn
trnar-acg-4 mRNA upstream 71787 84309930 ~ 84310002 (-) True trnar-acg-4
XR_005051593.1 mRNA upstream 85837 84323980 ~ 84326565 (-) False LOC110522894
XM_036978584.1 mRNA upstream 88688 84326831 ~ 84348966 (-) False LOC110524701
XM_021604566.2 mRNA upstream 88688 84326831 ~ 84349221 (-) False LOC110524701
XM_036978585.1 mRNA upstream 88688 84326831 ~ 84349222 (-) False LOC110524701
TU507563 other downstream 319044 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 362377 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 715412 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 915970 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 1104645 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1207538 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1248699 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1639590 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2310695 86548838 ~ 86549878 (-) True G451271

Expression Profile