RNA id: XR_005051593.1


Basic Information

Item Value
RNA id XR_005051593.1
length 1483
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110522894
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84323980 ~ 84326565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGCATAACCAATACTTTATGCACAAGAGTAAGCTAACCGTATACCTATGTTGATTTGGAGAAAAGTGGTAAATAGATTAATGATAATAGCTGAGCTCATTTAGGAGTATATTTAGTTTTCACTCTTGTGATACGTGGTGTGTGCCTTTATTGTTGCCCAGTGGACTTGGTTAAAAGGATGCAGTGATGGAGTCATTGGGAGAGTCATTTCGCTGTCCACAGTGTAGTATGGTATTCCTCTCCCTCCGACTCCTGGAGAAACATAAAGCATTGTTCTGTATCGGGAGCAACATTGGAGATCCTGTGGTGCTAAGACAAGGGCAGCCAGAGCGCAAGGGGATCTATCCAAAACCTGCAAGACCCATGATCTTATAAGAGTAAGTGCGTTGGCTcttagtgtagtgtgtgtgtgtctgtctaacaTCGATTGTTTCTGACAGCTGAGAGAGCAGAGGGGTATGCCCCTCCGGAACATGCAGGGGAGGGCCAATGCCACAGCATGGAGGGCTGGGAGAGAAGACAACCTACAGGGCAGTGTGTCAGAGAGTCTAGCCTTGAGGAACCTCACTGACGAGTTTCACAAGCTGAAGATGTCGATTGAGGAGAGCATGCGCAGCCTACCTAAATGGCCAACTGAGACAAGAGTGTCTGGAGATCAAGGTTTCAGGGAGGCAGTGGGGCCACAGGGAGAGGCTAAGAAAGCTGGCAGAGCACCATGACCGCCAGTTAGCAGAGATACAGGCCCACAACCACTCCTGGAGCAACAGAGAGTGGGGTCAAAGAGGTTAGGTCTGACTCACACAGCCCTACCCTGCCTGAGGACACAAAGGGACATGTCAACTTTGACCTTATATCATCTGTGGATGGCCCCCTCTCCTCCCAAATAAGAGCTCTGAGGCTGGCATACATGCAGTCCGGTGGATCTGTTCCAGCCGTTCTGGCCCAGGTGCATGCCTGCAGGCTGAGGCCCACACTCTGGAGCAGCAGGCCCAACCTGGGGCTGAAACCAGCTGCAGGAGGAAGAGTGTCAGTCCTGCATGGTCTCTCATTGGGGTATGGAGGGTGTCACATTTGATGCTTTGTTTCCACCTTCAGTGATTTGTGTCTATTGATCATGTGtacatctacaagaccctgctaggcaaagccccgccttatctcagctcactggtcaccatagcagcacccactcgtagcacgctctccagcaggtatatctcactggtcacccccaaagccaattcctcctttggtcgtctttccttccagttctctgctgtccatgactggaacgaattgcaaaaatctctgaagctggagactcacatctccttCACTAGCTTTAAGGAACCCTCGATCTATctcttagtcacatgtctgtggaacctgttcagtttatgtctcagttgttgaatcttgttatgttcatacaaatatttacacatgttcatttcgctgaaaataaacgcagttgacagtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508451 lncRNA downstream 278 84323495 ~ 84323702 (-) True G449261
TU508448 lncRNA downstream 3453 84320313 ~ 84320527 (-) True G449258
TU508432 lncRNA downstream 29692 84293988 ~ 84294288 (-) True G449243
TU508427 lncRNA downstream 35212 84288550 ~ 84288768 (-) True G449238
TU508399 lncRNA downstream 35682 84286715 ~ 84288298 (-) True G449210
TU508541 lncRNA upstream 140116 84466681 ~ 84467370 (-) True G449331
TU508544 lncRNA upstream 145531 84472096 ~ 84472405 (-) True G449334
TU508545 lncRNA upstream 145887 84472452 ~ 84472658 (-) True G449335
TU508546 lncRNA upstream 147012 84473577 ~ 84473837 (-) True G449336
TU508552 lncRNA upstream 166056 84492621 ~ 84492878 (-) True G449341
trnar-acg-4 mRNA downstream 13978 84309930 ~ 84310002 (-) True trnar-acg-4
XR_002473634.2 mRNA downstream 85837 84235685 ~ 84238143 (-) True LOC110524696
XM_021604553.2 mRNA downstream 150327 84158137 ~ 84173653 (-) True LOC110524694
XM_021604552.2 mRNA downstream 166616 84151778 ~ 84157364 (-) True magoh
XM_021604549.2 mRNA downstream 185152 84121349 ~ 84138828 (-) True scp2b
XM_036978584.1 mRNA upstream 266 84326831 ~ 84348966 (-) False LOC110524701
XM_021604566.2 mRNA upstream 266 84326831 ~ 84349221 (-) False LOC110524701
XM_036978585.1 mRNA upstream 266 84326831 ~ 84349222 (-) False LOC110524701
XM_036978586.1 mRNA upstream 1607 84328172 ~ 84349222 (-) True LOC110524701
XM_021604565.2 mRNA upstream 24371 84350936 ~ 84362693 (-) True slc25a24
TU507563 other downstream 407339 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 450672 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 803707 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 1004265 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 1016223 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1119116 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1160277 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1551168 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2222273 86548838 ~ 86549878 (-) True G451271

Expression Profile