RNA id: XM_036978584.1


Basic Information

Item Value
RNA id XM_036978584.1
length 4032
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110524701
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84326831 ~ 84349222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATTTTGACACAGTTGATTTCGTCTGCTGCTAGCTCCATTTATTATCCATTGCCGTTGACAGTTACACTTTTCGATGTTCATGTGTCATCACGTCAATGTTGATCTGCTGCAAAGGTGTGAAGAAGTAATTTGAATAGACGGCTGAGAAGTAAAGAAGAACACTTAGTTTTGTTTTGTTCAATGCCAATCCTTACAACAACTTCAGCACCAATCTCTTCTGCCAAATGCTACAGCAAAGTCAGGATTGTACAATCTAGTGAAAGGCAGACAGTTGTTAGATATCTTTTGAAAATTATATGAGTGACCTTTTATTAAGGAGAGTTGCCTCTGTATGACTCAAGTATAATTTTATAGCTAAGAAGTGAGTCAGTTTACATGAGTATGTGCTTTGAATGAATGGTGTATCTGACCAACAACAACAGCCTAGGTTTGTCGTGTCTGAGGGTAAGATAAATGCAAAAAGGTGCACAGAACCAAATCTCCAGTACGTTCTCTAGCAATACAACCTCTACAATCGTGAGTTAATAAGAATGTCAAGCTCCTTCTCACACCCCTTCTCAGAAGAGTCAGGATTTAGGGTGTGTTGATTGATACTACTAACAAACACAATGTTAGTCACATCATAGCGATAGGCCCCCTTGGGTTTTGTTATGTGACTGAACCGTGACCCCCCCCGTTTCTCCCTGTCGTCGCCCTCCAGTTGTGTGGATGAGGTGAACACAGGCTTTTCGCTGTTTTCCCCTTGAAGCGTCACTGTGAGGTAGatccccccccctttttttttcaGAGAGTGTCCACATCTGGAGATAGGATGAGTTGGTGAGGAGGAATCAGTGTCAGGGCTGGCACAAAGTGCTGCTTCCATAAACCTTTTGAGAACATAGAACAGTTGAGTTGACTTTCCTCACTGACTCACACAGTCAGGCCTAGATCAAACAACCAAACAGATCCCTACTACATATGCTTGCTTTTCATTCATGTCTGTCTGACTGATTCAATCGAATCATCTCGACACCAGCCAAGACCTGCAGTACCGATAACTGCCAGTCTCCTTACCACCCAAGCCCCTTCTCCACTCATCGTCTCACCCTGGGAACTGGAGCTTCTCTCTGCTGGGGGCTCTGTCTCGCTCAGGCTGAAGAGTGGTCCTACATCCTGGTCTGCCTTAGCTTAACAGACACCAGGGCTGGGCCAGCTGTACCAAGAAGAACACATACCACACTGACAGAGAGAAGGGCCACTGGACTACAGAGCTGACTACTCTGGATCCTGGCCATGAGGTTTGATGCTACACTCTACTGACGGGAGACACTGGACCTAAATGGCGCAGCATGACTTTGTTCCAGCCTGGCTTAACTTTTCCACGCCTCAGCCCGCCAAGtCTCTTGCAGCGTTTGAGAGGCACGGAGAGAATCTTGCCCGCGGTGATGCTCGGCCCGCTGTGAGCCGCCGCCGCCATAACTCCTCCGACGGCTTCTTCAACAACAGCCCTCTCAGAGCACCTGCAGGTGATGGGTtgcaccatccctctctcctgcgGCATGACTCTGTGGACTCAGGCGTGGCTAAGAGAGGGCAGGGGGGCCTGGGCAGCGGTCTCTGGGGGCAGGAGGGACCCCACCATGGGCGCCACACCAAGCGCCCTgtgggggacagggacagggagcgaCCAGGGCCCCACCGTCAGCGTAACGGGACCTTCCACCCCCGGAAAGGAGGCTTCCTGCCAGTTGAGGGAGGCCATGAGGACAAGCTGAAGTTTGTGGAGGAGGATTTTCCCTCACTCAATCAATCAGAGAGCAGTGGGAAGCCGGTGGCCCAGCCTCATGCCGTAGGGACTCCTGTAGGTGTTTGGGAGCACCCCCCTAGTGCCAAGCAGACCATAACTAAGATGTTGGTCATCAAGAAGGTTTCCAAGGAAGACCCTGGCGCTTCTTTCTCTGCTGGTTTCgccaacacaacagtaccccacgtAACCAACGGCACCAAAACCCCAATCTCTTCATCCAGTGTCTACAAGAACCTGGTGCCCAAGCCAGCTATCACCCCAACCAAGGCTGGTCCCTGGAAGCCAAgcgggagagaaaccaaaagcagTTTTAATTTATCCGGCTGGGACTCCGCCTTCACCAGCCCTGCTGCCTCTGTGAACAAACTTCTTACGCATGTCACTCCCCCGACCTACGGAACCCCCAAGGAGCCTCCCTCCAGCATCACCCCTCCCATCGACGTCACCCTTCCTCGTCTGAAGCTGATGCGTCGCAGCACCGACCGGAAGAGTGAGTTCCTGCGAGGCCTGAAGGATGATAGGAACTGGGACGGGCCCACCTCTACCAGTCCATCAGAACCtaaggagaacagaggagacttACAGGAGAATGGGATCCCTCACTCTCTCAGCGACTCAGACACAGATCACCTTTCCAGCTCGTTGGAGGCAGAATACAGGTTGCTCAAAGCTATGGGCTGGCAGGAGTACCCAGAGAATGATGACAACTTTTTGCCCATCACTGATGCTGAGCTCCAAGAATTTCAAGCTAAAACTGAGAAGCTGAAGAGGAACAGGCTGGTCCAGAACGGTGTTCTCCTGAAGCCTCTTCTCAAGGGTGCGCCCCTGCCCCTGCTGTCCTGGAGAAGCCCTGTAGAGCCTGAACTAGAAGAGGTCTCAGAGTCCGAGAGCACTAGCAGCAGCCAGACAGACGACGACGACACCTAAcatggctttacacccctcctcttcttctttctcacGTCACGCTCCCTCGCTCATTGCACTCGTCTGTTTTACACTTCTTCCTCGTTCACAAGACACTGGTCATACAGACACTGGTGTGACagagaggggtcagaggtcatgccTGAGGGTCTTCTTGGTTTTCCTTCTGCTTtttctttcctttctttctttttatGACCCCTTTGTTTGGTCTTTTCCTAGAAGCTGAAATGATTATTGAAAGCAAAACACATCAGCATTTTTCTTTTGATTTGGTGATGAAAGAAGCTAACCCATGATGTTGACAACAACCAAACCAATAATGATTTTACTTGCAAATGACTTCATCGATTGATACTTAATTTTGTTGAAAGATGGCTTTGACACCTGCTCTTGCTGAAACAATTTGTAGCATTTGTGTTGAGATGAAACAATCATTGTGAGCAGTTGATATTGACATTGCTTCCAATCCCCTAAATAACCCTTCTGTAAGGATTTaggtttgttttttgttttggtcCATTTAAAGCCGACAAATGGTAATGCATCTGTCTTATTTGAACAGTGTAAGGCATGCTTTTGCTCATCATTATATTTCTCCTAAGCGGTAGGAGAACAGTCATTTACAGTTATGGACCACCATTACTTTTATTGCAGCACTGATTGAATGTAGCCAGTAAGGGCATAAAGAAGAATAAAACAACGTTCTGAAGTAATGGAAATGTCACTTTACCAAACTTATTCTGGAGAAAAACTCAATTATTCCATCGTAGCTGTTCAAGCTGATTGTCTGTTCTTAGTTTACCAACCACCATAATTTTCAGATGTTCAAAATGCCAAGTTCTATGGTTGATAAAGAATGTAAATATACAGCCGCCCCCCAAATACTCCTGCTTCTTGTATTAAGATACAACCTGGTTTTCTTTCTTACATGAGGGACTGCTTTTGAAAATTATGCATTTACCAGATTTAGATTGCAACAATTTTCCTGGCTGGTAGAATGTTCAGCTGGCTTTATCACAGATTTAAGGctctttgtttttgttgtttttttctaaTTTGGTACAGCTGTAAATCCCACATagatatttcttttttttgcatATTGTTCTTGCAGCCTTGATATTCAGGGTggattgtaaaaaaaatacaatacaaattgTGAGTTTTGAAAAATGTAAGATTATTTTGATAACATTATTTACATATTTTTAAAGATAAGGTTTCCTGTAATGGACTGTCTGTATGAGAAAGAAACTACTGCATCTTGGAAAAATGTCATTGTAATAAATATTTTGCATCGGTTTGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508452 lncRNA downstream 1058 84324012 ~ 84325773 (-) True LOC110522894
TU508451 lncRNA downstream 3129 84323495 ~ 84323702 (-) True G449261
TU508448 lncRNA downstream 6304 84320313 ~ 84320527 (-) True G449258
TU508432 lncRNA downstream 32543 84293988 ~ 84294288 (-) True G449243
TU508427 lncRNA downstream 38063 84288550 ~ 84288768 (-) True G449238
TU508541 lncRNA upstream 117715 84466681 ~ 84467370 (-) True G449331
TU508544 lncRNA upstream 123130 84472096 ~ 84472405 (-) True G449334
TU508545 lncRNA upstream 123486 84472452 ~ 84472658 (-) True G449335
TU508546 lncRNA upstream 124611 84473577 ~ 84473837 (-) True G449336
TU508552 lncRNA upstream 143655 84492621 ~ 84492878 (-) True G449341
XR_005051593.1 mRNA downstream 266 84323980 ~ 84326565 (-) False LOC110522894
trnar-acg-4 mRNA downstream 16829 84309930 ~ 84310002 (-) True trnar-acg-4
XR_002473634.2 mRNA downstream 88688 84235685 ~ 84238143 (-) True LOC110524696
XM_021604553.2 mRNA downstream 153178 84158137 ~ 84173653 (-) True LOC110524694
XM_021604552.2 mRNA downstream 169467 84151778 ~ 84157364 (-) True magoh
XM_021604565.2 mRNA upstream 1970 84350936 ~ 84362693 (-) True slc25a24
XM_021604571.2 mRNA upstream 40509 84389475 ~ 84393027 (-) True henmt1
XM_036979072.1 mRNA upstream 44684 84393650 ~ 84419322 (-) True LOC110523024
XM_021604582.2 mRNA upstream 171801 84520767 ~ 84530919 (-) False mcoln3b
XM_021604583.2 mRNA upstream 171801 84520767 ~ 84531311 (-) True mcoln3b
TU507563 other downstream 410190 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 453523 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 806558 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 1007116 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 993822 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1096715 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1137876 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1528767 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2199872 86548838 ~ 86549878 (-) True G451271

Expression Profile