RNA id: XM_021604582.2


Basic Information

Item Value
RNA id XM_021604582.2
length 2256
RNA type mRNA
GC content 0.46
exon number 14
gene id mcoln3b
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84520767 ~ 84531311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCTCAAATGATTGATCCCAGTCAAGTGTGCTCGGGACGGGTCCAGTTGGGCACGTTGGGTAGCATACTTTTTAGCTTGTCCCCCACTATGCTGCATGCTTAGTGTGCTGTTTTTGTGTTGTTGAGCGAAATGGTGGAAAGTGATCATGTGTCAGAATGTGAGATGCGGTTTGTTATTCAGCACTGCTCGGGTCAAAGCTCAGAGATGGAGCACTCAGGTGGTTTGTACAGCTCTGTGTACGAGCCAAATGGGCATGCTGCCTGGGCAGACAACCAGCAGCATCAGGACAAGGAGACAGCGGACAACCTCAGGAGGAAGATCAAGTACTTCTTCATGAACCCCTGTGAGAAATACAAAGCCCGCGGACGGAAACCATGGAAACTGATGCTCCAGATCATCAAGATCGCCATTATTACCATCCAGTTGGTGTCTTTTGGACTGAGCAATCAGATGGTGGTAACCTTCAAAGAGGAGAACCTCATGACATTCAAGCATCTCTTCCTCAAAGATTACGTGGATGGCCGTGGGGACTCTTATGCTGTGTACAGGCAGGATGAGGTGTATGAACACATCTCTTACATAGTCGATAAGTATTCCCGTCTGCGAAATATCACCGTTGGTAACCATGCCTATGAGAAGAAGGGGGACACCTattcccctctgtctctgtgccaAGAGTTCTACAGGAATGGAAGCATTTCACCAGCCAATGAGACCTTTGATCTAGACGCACAGATTGAAACTGAATGCCTTGAGATTGTTCCAGCATTCCCCATGGGAAGCACAACCGAGGATGATCTGTTGAATTTCGTTGTGCATTTCAAAAGATTGTTGAATGTGAAGATCAAGTTCACTCTGAAGGCCATAAACCTACAAACAGTTAGAAACAGAGAGCTGCCAAACTGCTATGACTTTGATGTCACGATAACCTTCAACAACCAAGCCCACAGTGGCAGAATGAAGGTCGACCTGGACAATGACGTTGACATAAATGAATGTAGAGACTGGAAAGTAACCGGGGCCTCTCCCAAGAACATCTATTACCCACTGCTGTTTGACTGTCTCATCATTGTAACCTGCATCACCTCTCTGGCCCTCTGCACACGCTCTGTGCTCAACGGGATACGGCTACAGTTTGAGTACACAGACTTCTGCCTAGTCCGTCAGGGGAAGAAGGTTCCATGGTCCGATAGGCTGGAGTTTCTGAACGGCTGGTATATTCTCATCATCGCCAGTGATACACTCACCATCATCGGTTCCATTCTTAAAATAGAAATCCAGACAAAGATTCTCACCAGTTATGATGTCTGCAGCATCTTTCTCGGAACAGGCACAATGCTTGTTTGGATCGGAGTCATACGCTACATGGGATACTTCAAGAAGTACAATATTCTCATCCTGACCCTGAGAGCAGCTTTCCCAAATGTGGTTCGGTTCATCGGTTGTGCCGGAATCATTTACCTGGGGTACTGTTTCTGTGGCTGGATCGTGCTCGGGCCCTACCATGAGAAGTTCCGGACCCTGAACACAGTATCAGAGTGCCTGTTCTCGCTGATCAACGGAGATGACATGTATCCCACCTTCAAGTACATGAAGCAGAAGAGTTACCTGGTGTGGCTGTTCAGCAGAGTCTACCTCTACACCTTCGTCTCGCTCTTCATCTACATGATACTCAGCCTCTTCATCACCCTTATCACTGATACCTATGACACCATCAAGcaacagcagcaggaaGGGAGCCCAGTGTCGGAGCTGCATTGTTTCATGTCTGAGTGTAAAGATCTGCCCACCTCAGGACGCTACAGGCTAGAGGGGGAGTCTGGCTCCTTCACCTGCTGCTTCCCCAGATGCAAGGACTCACGAGAAAGGCTGAGCTCTGAATCAATAGACTCTGAGCCATAGTGGACCTTTTATCGGTCTGAGGTTAGTAAGAAACCTTACACACAACCATGACCAGCACTTTACTGTACAGTTTAGCCCAGCAAAACATTGTCCTCTTATTCACCAGTTAACTTGATGCAGTAGCAATTGAGCCTGGGGTTGAGGTTAAACCTGTTACTGTGTAAGATGCCTGTTAATGTACTAAAGTTGATGACCACAATGATATGCACTGATGAATGTTGATTATTTGAATGTACTGTAAATATCAAAACATGATTTGTTCAAAGACATGGGATGGCAACATTAATAAAATGAATAGCACAAAAAAGTTGCTATTCCCTAAATGTATATTTCCCAAGCCCAGTAGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508570 lncRNA downstream 9552 84510903 ~ 84511215 (-) True G449358
TU508564 lncRNA downstream 13591 84504652 ~ 84507176 (-) True G449352
TU508555 lncRNA downstream 24305 84495986 ~ 84496462 (-) True G449344
TU508552 lncRNA downstream 27889 84492621 ~ 84492878 (-) True G449341
TU508546 lncRNA downstream 46930 84473577 ~ 84473837 (-) True G449336
TU508592 lncRNA upstream 20214 84551133 ~ 84554495 (-) True G449378
TU508594 lncRNA upstream 29816 84560735 ~ 84561053 (-) True G449380
TU508602 lncRNA upstream 45052 84575971 ~ 84576211 (-) True G449388
TU508609 lncRNA upstream 46545 84577464 ~ 84577696 (-) True G449394
TU508611 lncRNA upstream 50039 84580958 ~ 84581711 (-) True G449396
XM_036979072.1 mRNA downstream 101445 84393650 ~ 84419322 (-) True LOC110523024
XM_021604571.2 mRNA downstream 127740 84389475 ~ 84393027 (-) True henmt1
XM_021604565.2 mRNA downstream 158074 84350936 ~ 84362693 (-) True slc25a24
XM_036978585.1 mRNA downstream 171545 84326831 ~ 84349222 (-) False LOC110524701
XM_036978586.1 mRNA downstream 171545 84328172 ~ 84349222 (-) True LOC110524701
XM_021604586.2 mRNA upstream 55102 84586021 ~ 84670452 (-) False syde2
XM_021604584.2 mRNA upstream 55102 84586021 ~ 84670458 (-) True syde2
XM_021604587.2 mRNA upstream 162676 84693595 ~ 84697943 (-) True LOC110524711
XM_036978598.1 mRNA upstream 179013 84709932 ~ 84862159 (-) True ddah1
XM_021604591.2 mRNA upstream 349084 84880003 ~ 84933122 (-) True znhit6
TU507563 other downstream 604126 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 647459 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 1000494 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 1201052 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 811869 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 914762 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 955923 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1346814 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2017919 86548838 ~ 86549878 (-) True G451271

Expression Profile