RNA id: XM_036978599.1


Basic Information

Item Value
RNA id XM_036978599.1
length 7124
RNA type mRNA
GC content 0.55
exon number 60
gene id LOC110524715
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84934006 ~ 85175437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcgctctctctctatctgtctgttggAGACCACTCAATAGAAAGCATCGAACTCGGATTCCTCTTATGCCactgtaaatatcacatttaaatactATATTTCTTTGTCGCACTGCTCTTTCTCGTCATACATTGATTTAAATCTACAGTCACCAGCCTACTTGCGTGCGCGCCTCTTTGGTAGGTCGAGAGAGAAAATAATCACTGTGCTCTGCAAACCGCAAAGCAAATGAGTTGGGGGAGAAGTTTTGAGTGAGTGGGAAAGCCGTGCTTGCTCCTTGGGCTGCATACAATGAGGAAATTCTGAGGTGGCATTCTTCGTTCAGTTACGCTTCCTTTGGTTGTATGTAACTAATGGCTAGCTCATGAACCTGGATCCTCTTGCGTGGAATTCTGTTTTCACTTAGAACTCTGCTGCCTGGACAAATGCATACAAATGCATTTAGGAGCCCAACGGACAAGGAGTGGACACGTTTCTCCAACAGCAATAACGAGAACCCTCCTCTTGCTCCTGTCAATATGCACAGCAGTACTGTCTGGAGAAGAAGACTACCGAGCACAAGGTGTCGATATCCTCCATTGGCTGGGCCTCACCGGCAGCAGAGACACCCTCTCCCCAGGGACcagctcctcttccccctcctcctcccttcactctccttcttcctctcccccAGGAGCCGGGGTCCTACTCAGCCCGGACGCCCACATTGAAGCCGCCACGGGGGGTCTGTTCCCGCCGGAGCTCGCTGAGGAGTTTTCTGTCGTGGTTAGCCTAAGCTCCTGGCGAGCGAACAATGCTTTCCTTTTCAGTGTGCGTGACGGCAGGGACAAGCTGCAGTTTGGCATCCAGCTGCTGCCCAGGAAGGTGGTGGTGTACACCGGCGAAAAGGCCTCTGTCTATTTCACCTACAACGTACACGACGGGTGGCAGCACTCTTTCGCCGTGAGCGTGCGGCCGCGCTCAGTTTCATTCCATGCGGACTGCGGGGGGGTGCAGCAGCGAGAACAGACGCTGACCCGGGCACATGTGCTGGGGTCCGGATCCAGAGGCCTGCTCACCCTAGGAAGGATGAAGTCTAAAGCAGCCCAGTTCCATGGCCTCATATGCCAGCTGGACATCTACCCCTCAGCCCAGGCTGCTGCGCATTACTGCCACTACCTTAAAAAACAGTGCCGGCTGGCTGACACTTTCCGATCGCCACCGCCACCCTCCAGCTTGGATATGGAGGTTTCTGGCTCCCTGGCTTTCTCCCCTATTCCTCCTTCTCCAGCATCCCAGACTGTGGAGGTGCCCCTCTTTCTGGCTGTAGACTCCCAGCAGTCCACCAACCTGGCCAGATCagcccccagccccagcccctccCTGGAAGGGTCTGGAATACCGTATTTAAGCCCCTCAGAGCAGTCTCACCTGGGGGTCAGGACCCAGACCCAGAGCTTCCTGCTGGAGCACCTCACCTCTATCCATACACCCACAGCAGGCCCCATTGGCTCGTCCTCAGGCACTCTAAGTGGGCTGAAGGCCATGGGCATCACACACAGGAGTACCAACTCCAGCTCCGGATCCAGCCCAACAGGGGGCTCCACCAGGCAGTCTCCCCAGTCTGAGAatgacacagaggaggaggaggaggaggagaaggaggagaggagcccCAGTAGGCCCCAACAGGTCACCACAGCCACCCCAGGCCTGATCTCCCATGTCAGGCAGAGCCGCTTGAAGGAGGGCCTGAGGAACAGCTCCAGGCCTAGAGACTCTCGGCCCCAGCCCACTAACCACCTCGTGGACACAAAGCTCAGACCCAACAGCACCACCCTGTACCGGGAGAACCAGGTGGACACCTCAGAGGAGCATGGCCAGGAAGGGGCCTACGATGTGGGCATGGAAGGCTACGACTATGGATACGAGGAACCAGACTACTTCTACAGAGACTATGACGAGGCTTTTCCTGGACCCAAAGGAGACCCAGGTCCTCCGGGTCCTCCTGGCCCCCGGGGTCTACCTGGTcctgctgggaggagaggagCTCGGGGTCCTACTGGTCCACATGGAAACCCTGGTTTGCCTGGTCCTCCTGGTACCAAGGGCTCCAAGGGCGATCCAGGACTGTCCCCAGGTCAGGCCCCGCCAGGAGACAAGGGTGACAGAGGTCCACAAGGTGTTCTAGGTCCAGACGGGTTCGCAGGTCCAATGGGTCCTAAGGGCTATCCAGGGCCATCAGGACAGCCAGGGGAACAGgGCATACCAGGACTCCCAGGAGTGACTGGGGCTGCAGGTTACCCTGGCAGGCAGGGTTTGGCTGGGCCAGAAGGTAACCTAGGTCCTAAAGGTGTACGTggTTTCATTGGTCCTCCTGGTATAGCTGGTCCACCAGGGCTAGAAGGGGAGAGAGGTATTCCTGGTCCGGTTGGGAAGAATGGTCCCAAAGGAAGACAGGGAGTTGTTGGGGGTGTTGGTGAAAGGGGTTCTCCTGGTCCTGATGGTGACCAGGGGCTTGCTGGAGGTGCTGGCATGGGGGGCTTTCCTGGCCTAAGGGGAGACCCAGGGCCTGAGGGACAGCGAGGACTGACTGGCATAGTGGGAACTATGGGCCTGGCGGGAAAAGCGGGGCTGCCTGGATTGAAAGGTGATAAGGGCGAACCTGGACTAAGGGGTGAACCGGGAGAGATGGGTTACCAAGGTGACAAGGGTGCTGCTGGCTTGTCTGGACCTCCTGGACTCCGTGGGAAACCAGGTCCACCTGGTAAAATGGGTGAGATCGGACCACAGGGACCTCCTGGCCCACCAGGTCCTGAGGGTTTTCCTGGAGACATCGGTGTGCCAGGTCCCAACGGCCCTCCTGGACCTAAGGGACTCCTAGGTACCAGAGGGCCACAAGGACCCCCAGGGCCAAAAGGAACAGAGGGTGATGAGGGACACCTTGGCCCACTTGGCGGCCCTGGCACCACTGGGAGAGTTGGAAGGAAAGGCTACATAGGGGAACCTGGACCTGAGGGACTGAAGGGGGAGACGGGGGACCTTGGCGGCATTGGAAAAAATGGACCGCAAGGTCCAGCAGGCCTGATCGGTACGTCAGGGGGAGCTGGAGATCCTGGTGAAAAGgGTGACCGTGGTCCTGCAGGTCCGTTGGGTCCTCCTGGGGAGATGGGGTCCAGGGGGTATCCAGGCTTACCAGGCGGACCCGGCGATGTAGGTCTGCAAGGCCCATTTgGTCCTCAGGGGCAGAGGGGTATACCAGGGGTCCCGGGGCCAAAGGGCAGAAGGGGGCCGAGGGGTGCAGACGGTCCACTGGGGGAACCAGGGCCTGAGGGCACCAAGGGAGAGCAGGGGGAAGGTGGAAAGAAAGGGGAGCCTGGGTTCATAGGTAAAGCTGGCGGTCCAGGGGAGAGAGGCCTATCAGGGAAACCTgggaAAGCTGGGATCCCTGGCAGCACAGGAGAGAGGGGTGCCCATGGTGAACCAGGGCCCAAAGGACCCGCGGGGGACGCAGGACCTGACGGAGAGCAAGGACATGAGgGAGCTCCTGGCGGAGAGGGGGAGCCAGGTCCAGTTGGAGAACCTGGGATAAAGGGCCACGGGGGGCCggttggaggagagggggaacaaGGACAGCAGGGAATGAGAGGTCTTCCAGGTCCTGCTGGTGAGGACGGGCCCCAGGGAAAAGATGGACCAAAGggAGAGCCAGGTGACTGTGGGCCCATGGGTGAGGCAGGGgacagggggatagagggagaccCTGGGCCTCCTGGAACCACCGGAGTGGCTGGAAAACAGGGTTTCTCTGGTCCAGAGGGGAAACAGGGTCCCCCCGGCAACCGAGGACGGCAGGGCAAGAAGGGTGAGGCTGGCAAACCAGGTCCTATCGGTGAGACAGGGGACATCGGGGACATCGGCCAAGAAGGAGGGATGGGACTGAAAGGAGCCAGAGGAACCATAGGCCCTGTGGGTCATCCAGGAGTTATGGGGCCTGAGGGGATGCCTGGAATTGCAGGATACACAGGCCATGCCGGcaaaccaggacccataggaccaCCTGGACCCAAAGGTGAAAAGGGTTACCCTGGAGAAGACAGTAAGACCCCAGGACCTGCCGGGCCACTAGGTGAACCAGGTCTCCCGGGTGAGCGAGGAGACCGCGGAGAGCCTGGAGATGAGGGATATCAGGGCCACACTGGCCTCACTGGACTTCGCGGGGCTGTTGGAGCACCAGGCCTTCCTGGAACACCAGGGGAATCCGGAGAACCGGGCCCGAAAGGAGAAATGGGAActcagggCTTCGAAGGGAAGAAAGGAGCGAGAGGCCTGACTGGGACCGCTGGTGTTGAAGGCGAAGTTGGTTTACTTGGACCCAGAGGCATGGAGGGATACGCTGGGCCTGATGGTCCTCCAGGATTGGTTGGGTTACCAGGATTTCCAGGAAAGACTGGGCGACAGGGCCAGCGTGGCACCGTGGGGCAGGAGGGGTCGGCAGGACTACCTGGTCCCAGAGGGGAACTTGGTCTGCCTGGGTTGGTCGGAGAGAGGGGGCCTGCTGGAGAGAAGGGGGAGACTGGCttggcaggagagagggggacccCAGGAATCAAAGGCATGGAGGGCTCATCCGGAGACCAAGGCAGGATAGGAGACCCAGGACTCAAAGGACAACCAGGGGAGCCGGGAGACCTGGGGATGATTGGCTTCTCTGGTTTTCCAGGACCTAAGGGACCAAATGGGGATTGGGGTTTCAAAGGCATACCTGGTCCTAAAGGTCCTGTTGGCATTCTGGGTTTCAGTGGACCTGTTGGACCAGAAGGGATGATCGGCCCAATGGGGAAACCTGGACCGAAGGGTCCAAGGGGAAGCCATGGGGAAATGGGACCCCAGGGGCCACAGGGACATCCAGGGCCCAGAGGCCCCCCTGGTGCTCCTGGCCCGACCAGACGAATCGAGTACAACTCTCTGTTTGAGTACAATGGTGCCTTGAGGACAGAGATCTACCAGAACACGGAGATGTCCCTCTCAGACCAGAATGCAGGGATCTTTAAGACCTTGCACTACCTGAGCAGTGTGATCGAGAGCATGAAGAAACCGCTCGGAACCCGGGAGAACCCGGCACGATTTTGCAAGGACCTGCTGGACTGCCAACAGAAGCTCTCTGACGGACTGTACTGGATCGACCCTAACCTGGGATGTCCGTCAGACACCATTGAGGTCTTCTGTAACTTCACGGCAGGCGGGcagacatgtctcctcccagTAGCCTCTAACAAGCTGTCGTTCGGTGTGCATAAGGTTCAGATGAAGTTCCTCCACCTCTTGAGCACAGAGGCCAGTCAAGACATTACCTTCCACTGTCTGAGTGACCCTCCCTTCAACCCCACAAACACCTACGGTGCTGACGACCCAGGACAGGAGTATCAGGCCAGACCACCAAGGTTTAGGGGATGGAATGGACAGATGTTTGAGGCAGACAGTCTACTTGAACCTCACATGCTACTAGACGAATGCAGGATCCAAGATGGCAGCTGGCACCAGTCACGCTTCTTCTTCCATACTCAGGACAGCTACGAGCTCCCCATCATTGATATACAGGAGCAACCTTTGTCACAGTCCAACGATCTGCGCCACCTCGAGGTGGGACCTGTCTGCTTCCTGTGAGGTCATTATCCATCGCTAGCCTGCCTGTCCAAAATATAAACTATAAAAAACGAGCATGGCATAAGCAGGCCAAAATGGCTGCTCACCAAACCAAAGAGAGATCTCTATAAGCCCAAGCAGAGTTGGTCAGGTCTGCTCCCCCACTTGGGAGACTCTTTATTGAGTGTTAGCGAGTGTCAAATGCCCTGTCCAATGGAATGGCAGACTTCTGTGGAAGAACTCAGTCCATAGCAAACTAGGCCAGCTTACAGTAAGATGGCCTCAGGAGAGCAGTGTATACCAATATTTATCAAATAAATGTGTAAAGTGTGTCTGTTTggtttttgtttttcaaaaggtgCTTGAGTTCGTTGGACCCTGAACTCAGGACAGGGCTCATCCACACAACACCGTCCTAAAACTCAAATCCTGTGCCTCCCTCCCTACTGCCCACCCccatcctccttctcccccatatTCACCCTCCCAGCCATCCTTAGAAGGGGCCTAGCTATCCGAAGGAAAGCTCTAGGGGCTTTGTAACAGGAATACTGTACAACAAAAGCTTCCTAAGAGTGCAATAGCTTGTGAATTAAGAGTGAGAGATTTCATATTGCAATTTCAATCAAAGGTCAACTGCCAGCTCAGACCgcaattttgtttatttttaatgtTTGAATCTGTTGTCCAACACAGCTGGATGTTTACACCTTGGGTAAGTCCAaaattgcaccatattccctatgtaatgcactagGTTTAACCAGGGCACATAGagctcaaatgtagtgcactatatcaggAATATGGTTCTATTTTGGACACTGCCCTTGAAAGATGGTGCTCTACCTCCTGCTTGTATGCCTTCTATAGGTGCTAGTGTCAAGTAATTCTTTGTCCTTATGTACCGGTTACATCAAGATCTGTTGTAAGAGTACTTATTTGAAATTTATATGAAACATTTGTTGATGAATTACATATTTTTTAGCTTTTACTCTTCATTTTATTTGGTAGGTGGTAACGTAACCTATCATTGGTGCTGCAACAGACACAAGAGCGTGAGACATCAGTGAGTTGTGAGACATTTTTCCTGTGTATATTTTGACATTATATTGTTGATTATTTATATCCTTTGTTTTTGTTCACATTACTGTACCCCAATAAATTATACTCTCAGAGATCTATTTGGTCAACTCCAACTTAGTCCAAATAACTATTTATGTAAAAAATTGTATTTGTATACTATGTACACACATTATGTGACTGTTCATTGTATATGTTCACATTCACTACAATGGGGGTTGATAGCTCATACTGGCAGCTAGCATAGGCCAGAGTCAGAACACATCAGAAATAGCAATGATCTTGTTCTTAAGTTATGTTACGTTGAAAAAAGTGTAATTAAATAAGTAAATGCTCTCAAGGAATAAAGTTAAAATTGtgtaaatatgaaatatattgacATTAAATAAATGAAATGTTTTAATCCCAAAA

Function

GO: NA

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508749 lncRNA downstream 66515 84867262 ~ 84867491 (-) True G449522
TU508739 lncRNA downstream 90847 84831205 ~ 84843159 (-) True G449512
TU508630 lncRNA downstream 328876 84604918 ~ 84605130 (-) True G449412
TU508626 lncRNA downstream 333445 84600360 ~ 84600561 (-) True G449408
TU508621 lncRNA downstream 337693 84595287 ~ 84596313 (-) True G449403
TU510041 lncRNA upstream 103887 85279324 ~ 85280531 (-) True G450640
TU510044 lncRNA upstream 105097 85280534 ~ 85292644 (-) True G450643
TU510072 lncRNA upstream 162186 85337623 ~ 85337868 (-) True G450671
TU510074 lncRNA upstream 163403 85338840 ~ 85339159 (-) True G450673
TU510078 lncRNA upstream 167925 85343362 ~ 85343680 (-) True G450677
XM_021604591.2 mRNA downstream 884 84880003 ~ 84933122 (-) True znhit6
XM_036978598.1 mRNA downstream 71847 84709932 ~ 84862159 (-) True ddah1
XM_021604587.2 mRNA downstream 236063 84693595 ~ 84697943 (-) True LOC110524711
XM_021604584.2 mRNA downstream 263548 84586021 ~ 84670458 (-) True syde2
XM_021604586.2 mRNA downstream 263554 84586021 ~ 84670452 (-) False syde2
XM_036979076.1 mRNA upstream 259692 85435129 ~ 85443236 (-) True LOC118964733
XM_036978603.1 mRNA upstream 268059 85443496 ~ 85472422 (-) False lurap1
XM_021604598.2 mRNA upstream 327530 85502967 ~ 85511477 (-) True LOC110524719
XM_036978612.1 mRNA upstream 356253 85531690 ~ 85652797 (-) True sgip1a
XM_021604606.2 mRNA upstream 506872 85682309 ~ 85695967 (-) False pde4ba
TU507563 other downstream 1017365 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 1060698 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 1413733 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 1614291 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 167351 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 270244 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 311405 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 702296 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 1373401 86548838 ~ 86549878 (-) True G451271

Expression Profile