RNA id: XM_021604598.2


Basic Information

Item Value
RNA id XM_021604598.2
length 2620
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110524719
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 85502967 ~ 85511477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTCTCCATGGGGGACGACATCCCTGTCGAAGAAGAGTACGCACGGCTAGCTAGCTTAGCTAACGTTCTTTAGCTAATAAACTTCGCATGAATCAAGTACCAGCTCATCGTTACTCTCGTTCGGTTTCATACACAAGGATATTGACACCAGTCTACTACAATGGAAGTCCTAATGCATCACCTTCAGCAGAGAATCTTACCCCACCTGCCAAGAGCCTTCACCACTCCTTGTAAGAGCCATTCAAGCTGTGCTGCTGGACATTCCCCAAAGCCAACCCCCATTGGCTCCATCTCCCGACCTAGCACACACCTTCCCCTAGTGTCCCGCCTCTTCCAGCCCTCCAACCTGCGTGATGTGGGGCAGGAGAGTCGTGCTCAGGGGGAGATGACCTGCAAGAGCCAGAGACTGATGCAGCAGGCAGGTCTCATCCACCCTTCCAACCctggctgctactactacctcCCAGCCACAGTGCGCTCCATGGAGAAGCTGGTGAGGCTGATCGACCAGGAGATGCAGAGGATTGGTGGGCAGAAGCTGGACATGCCCAGCCTGTGCTCTGCTGAGCTGTGGAGACGCAGCGAGCGCTGGGACCTGATGGGAAAAGAGCTGTTCCGCCTGAGGGACCGCCACGGAGCTGAGTACTGCCTGGGCCCCACCCATGAGGAGGCAGTGACAGAGCTGCTGGCCTCCCAGGGAACCCTGTCTtacagacagctgcctctaatgcTTTACCAGATGACCCGCAAGTTCCGTGACGAGCCAAAGCCTCGGTTCGGGCTGCTACGGGGGCGGGAGTTCTACATGAAGGACATGTACACATTTGATGTGAATGAAGCGGCTGCCTACCACACGTATGAGTCTGTATGTCAGGCTTACAACCGTCTCTTCTCCCGGCTGGGCCTACGCATTGTTCAGGTCCAGGCAGACACAGGGAAAATCGGAGGTAAACTCTCCCACGAGTTCCAGCTCCCAGCAGACATCGGAGAGGACAGACTACTTGTCTGTGGGAGCTGCTCCTTCTCTGCTAATGTGGAGACCATGGAACCAGGCCGGACTGACTGCCCACAGTGCCAGGCAGGCACACTGGTGGAGTCCAAGGGCATAGAGGGCGATGATAGCGACGATGGCATGGACGACTTTATGGAGAAATTCAAGAAAGAGAAATATAGCAACGCCTTTTCCGAGAAGAACTGGGAAGAGGAGTTCGATAAGGTGCCTATGTTCATGAAGACGGCGCCTGATGAGATTGACCCCATGAAACACCCGGAGCTGGCTGCTATTCAGTCCATCATCCACGACGATGACAGACCACTAGAGGAGCAAGCAGAGAGCCTGAAAGATGAGGGGAACGACTACTTCAAAGAGAAGAACTACAAGAAAGCTATAGTGTCCTACACAGCTGGACTGAAGAAGAACTGCAGTGACTCTAATGTCAATGCCATCCTGCTCACTAACCGAGCGGCAGCACACTTCCACCTGGGTAACATGCGCTCTGCACTGAATGATTCTGTCGCTGCAAAGAAGTTTAAACCAGACCACCTCAAAGCATTAATTAGAGGTGCCTCGTGTTGTATGGAGCTGAAAAAATATACAGATGCCCTGCTGTGGTGTGAGGAGGGGCTCAAGCTGCAGCCCACAGACAAGAAGCTACTGGAGCTGAGAGCTACAGCAGATAAACACAAGAGAGCAGCAGAAAGAGATGCCAGGAAGGCAAAGGTTAAAGAAAAGAAGGAGCTCAGTGAGAGAGAGGCTCTGCTGGCTGCTATAAAGGGGCGTGGCATCAAGTTACTGAAGCCTAAGCAGCGTCCTAAGCGCAGCTCTGACAGTGACGATGATAATAGAGGCCCCTCTAGAGCCATGACAGGCTTGGACCTGGACGGTCTGTGTTCTGTGGAGGCCACAGGGGCCAAGGTGTTCCTGGATGAACAGGGTGTCATGcattggccagtcctcttcctcTACCCCGAACACCAACAAACAGACTTCATCTCAGCCTTCAGCGAATCCTCCAGCTTTCTTGATCACCTGACTCTCATGTTTGGAGAGGAACTCCCACCTTGGGACACTAACCGGAAGTACTCTCCCCAAAACCTCCAGCTGTTCTTTGAAGACCACGAAAAAGAGTCCTTATATCAAGTCAATCCAGAGACGCCTCTCATTAAAATCCTTCAGCATAAAAGGTGTTTTGTAAAAGCAGGAACTCCCAGCTTTGTCATTCTGGTAAATGGGTCGCCGTTTTGCGAGAAGTTCTTATCAGAAAGGAAAACCATTCGACTGTAATGACACTCCTCATTAATCAGCCTAGACCTGTCAATCTCAGACTACTGGTATGAACTCTTTCCCACCAATCGGAAAGGACtgcactcctctccactccctgcCCAAAGTACATGTAAAAGTGTAGATTTTGCTATTTAAGAGCAGAGATTGTTATGTTTGGGAGCCTTTACATTGTTCCAGATATCTCCAACATACTATGTGATTGGCAAGATTGCAGTGTTCATTACTGTATGTATAGATCAAATTCTATATCAGTGTCAATCCGGGAACCCGTCATAAAATCTGTTATAATTAAGTCACCATGTCACTTACTAAAAGGCCTTAAAACAAAGTA

Function

GO: NA

KEGG:

id description
K24927 TTC4, CNS1; tetratricopeptide repeat protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU510128 lncRNA downstream 56182 85445878 ~ 85446785 (-) False lurap1
TU510129 lncRNA downstream 56182 85445878 ~ 85446785 (-) False lurap1
TU510130 lncRNA downstream 56182 85445878 ~ 85446785 (-) False lurap1
TU510132 lncRNA downstream 56182 85445878 ~ 85446785 (-) False lurap1
TU510134 lncRNA downstream 56182 85445878 ~ 85446785 (-) False lurap1
TU510198 lncRNA upstream 14334 85525811 ~ 85527502 (-) True G450767
TU510228 lncRNA upstream 71289 85582766 ~ 85612910 (-) True G450790
TU510239 lncRNA upstream 104503 85615980 ~ 85619096 (-) True G450801
TU510256 lncRNA upstream 131359 85642836 ~ 85643526 (-) True G450818
TU510263 lncRNA upstream 144057 85655534 ~ 85655803 (-) True G450825
XM_036978603.1 mRNA downstream 30545 85443496 ~ 85472422 (-) False lurap1
XM_036979076.1 mRNA downstream 59731 85435129 ~ 85443236 (-) True LOC118964733
XM_036978599.1 mRNA downstream 327530 84934006 ~ 85175437 (-) True LOC110524715
XM_036978600.1 mRNA downstream 401045 85100248 ~ 85101922 (-) True LOC118964676
XM_021604591.2 mRNA downstream 569845 84880003 ~ 84933122 (-) True znhit6
XM_036978612.1 mRNA upstream 20213 85531690 ~ 85652797 (-) True sgip1a
XM_021604606.2 mRNA upstream 170832 85682309 ~ 85695967 (-) False pde4ba
XM_036978616.1 mRNA upstream 170832 85682309 ~ 85709070 (-) False pde4ba
XM_036978614.1 mRNA upstream 170832 85682309 ~ 85790364 (-) False pde4ba
XM_036978613.1 mRNA upstream 170832 85682309 ~ 85968626 (-) False pde4ba
TU510180 other downstream 15809 85486842 ~ 85487158 (-) True G450752
TU510133 other downstream 31087 85445681 ~ 85471880 (-) False lurap1
TU510077 other downstream 159895 85342788 ~ 85343072 (-) True G450676
TU507563 other downstream 1586326 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 1629659 83871602 ~ 83873308 (-) True G448411
TU510403 other upstream 366256 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 1037361 86548838 ~ 86549878 (-) True G451271
TU510765 other upstream 1085875 86597352 ~ 86597744 (-) True G451286
TU511053 other upstream 1254106 86765583 ~ 86765987 (-) True ror1
TU511399 other upstream 1730377 87241854 ~ 87243233 (-) True G451856

Expression Profile