RNA id: XM_036978613.1


Basic Information

Item Value
RNA id XM_036978613.1
length 5330
RNA type mRNA
GC content 0.46
exon number 15
gene id pde4ba
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 85682309 ~ 86031149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTCCTCAATGCAACTGGTATCTGGATTTAGTCAGGAACGTTTTAGTCGACCACTAACCATAGCTATCAGTGCCAAACAGGTGTGTATGTGAAGCTAGCTGCTGTGTAACAGAGTGAGGAATACTCCACGGAAGATGAGGAAGAGCAGGAGTGTGCTGACGGTGTCTCCCAATGATgaCAGTAAAGGGCCTCCAGACTGTGGTCTTAGTGAGTACTCCTGTACGCTTGGTGTCGACCTACGGAGGGGACGCAGGCGTTTCTCTGGCAACCTGCAGCTGCCCCCATTGTCgtggagacaggcagagaggtcgCGGACCCCTGACAATGACTGGGTCGTCCGACCCACCTTCCTCCCCTTCTGCACCCCACCCCGCATCGACATCACACCTGTCGACCCCGAGTGCTTTGACGTGGAGAATGGCCCATCAGCCAGCTGCAGTCCATTGGACCCTTCAGCGTCTCCCGGGTCAGGCCTGGTCCTACACACCAACTTCCCTGGACACAACCAGCGCAGAGAGTCCTTCCTCTACCGCTCAGACAGTGACTACGAACTCTCGCCCAAGTCCATGTCCCGAAACTCCTCCATCGCATCCGAACTACATGGTGATGACCTGATAGTAACGCCTTTTGCTCAGGTCCTCGCAAGCCTTCGAAGTGTAAGAAATAACTTCACAGTCCTGACCAATGTCCAATGTGCTTCAAACAAGAGGTCCCCTGCGGCCACTCAGCCTCCCATCACAAGAGTCTGTCTGCCAGACGAGTCGTACCAGAAGCTGGCCATGGAGACCATGGAGGAGCTAGACTGGTGTCTGGACCAGCTGGAGACCATCCAGACCTATCGCTCCGTCAGTGACATGGCCTCCAACAAGTTCAAGAGAATGTTGAACCGGGAGCTGACACACCTCTCAGAGATGAGTCGCTCCGGGAACCAGGTGTCCGAGTTCATCTCCAACACCTTTATGGACAAACAGAACGACATGGACATGCCATCTGTGACGCCCAAGGAGAAGGCTGGTCGGGAGAGGAAGAAGCAGCAACAGCTGATGACTCAGATCACTGGAGTGAAGAAGGTCTCTTATGGACCCTCCCTCTCCAACTCCTCCATCTCACGGTTCGGGGTCAAGACGGACAAGGAGGACATGCTGTCCAAGGAACTGGAGGATCTGAATAAGTGGGGGTTGAACATCTTTACCGTGTCAGAGTACTCCGAACATAGACCTCTCACCTGTATCATGTACGCCATCTTCCAGGAGAGAGACCTGCTGAAGACCTTTAAGATCCCGACAGAGACGTTTGTGGCGTACATGATGACCCTGGAGGACCATTACCATGGAGACGTGGCCTACCACAACAGCCTCCACGCGGCAGACGTGGCCCAGTCCACACACATCCTACTCTCTACACCAGCCCTCGATGCGGTCTTCAGCGATCTAGAGATTTTGGCGGCCATCTTTGCTGCAGCAATCCATGATGTGGACCACCCGGGGGTGTCCAACCAGTTCCTCATCAATACCAACTCTGAGCTGGCCCTGATGTACAACGATGAGTCCGTGTTAGAGAACCACCATCTAGCTGTGGGCTTCAAGCTGCTGCAGGAGGACAACTGTGACATCTTCCAGAGCCTGACCAAGAAGCAGAGGCAGAGCCTGAGGAAGATGGTCATCGAAATGGTTCTGGCCACTGACATGTCCAAGCACATGAGTCTGTTAGCTGACCTGAAGACCATGGTGGAGACCAAGAAGGTGACCAGCTCTGGGGTCCTGCTGCTGGACAACTACACCGACAGAATACAGGTGCTGAGGAACATGGTTCACTGTGCTGACCTGAGTAACCCGACCAAGTCCCTGGAGCTGTACCGTCAGTGGACCGACCGCATCATGGAGGAGTTCTTCcaccagggagacagggagagggagagaggcatggagatCAGCCCCATGTGTGACAAACACACTGCCTCAGTAGAGAAAAGCCAGgtgGGTTTCATAGACTACATCGTCCACCCTCTGTGGGAGACGTGGGCTGACCTGGTGCACCCTGATGCTCAGGACATCCTGGACACTCTGGAGGACAACAGGAACTGGTACCAGAGCATGATTCCCCATAGCCCCTCTCCTCCCTGGGCCACGGAGCAGCGTGAGCAGGGTGGAGGTGAAGGGGGCCAGGTGGGAGACAAGTTCCAGTTTGAACTCACCCTGGAGGAGGAGGACTCTGAGGGTAcagagaaagatgaacagagccaggaggatgaggaggaggaagaggatgtttTGGGGGAGTCGTCTCGGTCTCCGGTTGACTACTTTGACTGTCAGGACCCCGAGGAATCCATGGAGCCCACGTCATCCATAGCGATAATTACCCACGATGCATCACCCACAGACACTTAATGGGCTCGGCTGCACCGCAATGGTGGTTGGTTTAATATTTTAAACAGGAGAAATCCTGCAGCTGTGCTTTTTAACAAGCCCACGGGGGTCTTAGTTTGAGCTCGCATGGGGCGTCAGTTTCAACCCCCCCATCCTTGCACCGTTAGGAGCCGGCAACAGAGGGACAGTTTCAGTGGGGCGGCTACGGAGTTCTCAGGAAAAATGCTGCAAACATTTTGGGCCTGAAGGATTGACGGAAAGGCCTCTGAGGAAATGAAATGAAGGACTTGGGCCAATCTGGGAAATGGTTGTTTTTCCATTCGACTGGCATCTGAAATGTCGACACTACTACTGAGAGAAGTTTTGTACCTTGTGACTTTTTTACTGAAATGGGATGTCATGAGGTAGCTTATGAACTACTGATTGATGGACATGAGTTTAtatagagagaaaaaaatatgttCACTTTTTTCTTGTATCATTTGTCAGAGGACTTTTGTGTGCCTTTTTACTATTATCTTTTGAATTGTTTTTTAATTTATTGAACACACTTTAGtatgaatgttgttgtttttttgtttttttcgaaaGCTCAAGAGCAAAATCCTTTTATATCTCAGACAAAGAGAACAGTCTTCCTACTACTATTGGGCAATAGAAGAAATCCAAACTAACTTAGACAAACAATTTCTGGACATACCCATCAAatgctaaaaacatgttttcccataaTAAGAAATACACATTCTGTCATCTTAATCCATGTACAAAATACATGTTTCTATATGGAAATTAAATGTACACAATGTACACATTCTGTCATCTTAATCCATGTACAAAATCCATGTTTCTATATGGAAATGAAATGTACACAATGTACACATTCTGTCATCTTAATCCATGTACAAAATATGTTTCTATATGGAAATTAAATGTACACAATGTACACATTCGTGTTGCATGTCTAGATTGTCAGACCTCACTGTAGACAAATAGATAGATGTTCACTTTAGCTCCACAAAACAGTTACACAACATTCTGACATCTAACCTGTTTCCCCACAATCTCCCTCATGGATCAAATCCTGATATCGTTCAGACTCCAAACAAATGTCAACGTCATAGACAGAAATAGCACTTGGCAGCCAAAGCAAAGTTTCTTATCACATGCAGTTGGAAGGCTTTTTCCAGCTTCCTCTCGAGGTATCCTGCTGTCGTCTATTAATCCTACTGGACCAAAGATTCCAAAACCTAACTGGTTCTGATAATGTAACAATCTAACCAAGGAAGGACCCCCTATCCCTGTAGAATCAGGACCGGTCCAGATGATGAAAGGTGGCCGGGCGGCTGCATGTCTAGAAGTCAGCTGCACTATAATTATTCACATGGTTCATACAGTTCAGCTATTTATTCATCCACCTAATAAACGGGAACGAGGTTCTGCTTCTACCCATTGACCTTAATCTTCCCTTCCCACTAACTGTATCACATTTCCTGACCGGACGGGAAGTTTATCAGGATTTAGTCAGTTAAATGTAATCCTCTGCTGCAAAACCCAAACCCGAGGAGAAAAATACTTATTGCTGAGAACAAGAGGATGATGACCCACAGTAGTAGGTTATCTAGAGATGATGTGACAGAGACACCAAACCAAAAGGCCCCGGACAGTGTAATTCACTGTCACTGTGGGTCAGCATTAAGACCGTCAACTCCAGGCAGTCTGCAAGGCAGATTGTCCTTTACAGGCCTCCATGGCTGGTTTTCATGATGGCCTATTCAGCATCTATGACCTATTCTCCATTATTCACTTAGGTTTACTGACATACTCAAAGGTACTTCAACTACCTTATTGTCTATAACCTCACTCACTCCAGCAGGCTTACATGGTAATCATGTGCGTcgatgcgtgtgcgtgtgtgtgtgtgtgcatgtcataAAATGTGAGAgtacgtgtgtgtatacatgttAGTCTTTGTCACCTAGGCTCAACATGACTCCTCTTATTGTCTGTCACTAGAGCTCAAGCTGGTCCTTTGCTGTTTATAACAGTGTATTCATTACATTCAGTTGTACTGTACATAAGAATACTGTTTCAGTCAGTGTAAATCTATTTTAATTTATATGCACTTGCATTACCTGGAAGGGGAGTGTCTAACATGTACAGGGCTCTGCGTCGGAGGCTTTTTATATCCTctatttgtttttttatattaTATAATAAGTCAATATATATTCGCACAAATGTTTGAGTGCCCTGAGCAGCAGCTAAAGAGACATATTCACAACCTGTAGGTTTACAACgcatagaggacatgttaaacaacAGAGGCCTGGGTATAGCTATGATAAGCTGTGGAGTAGCTTTGATACTGTAGTCTATCACTAGTCCACACCGAGACGTTCTCCTCTTAGCAGCTTGTAGTAGTGACTAATCCATGCTCCTCTGTGCAACATTTTCAATGCAGATTGCTGATTTGGGGTTCAGATCTACTGGTTCGACAGAAGTAAGGAATAacaacagaaagacagacagagtgtcTGCTCCTTTACATGTCCTTCCATGTAAAGTAGTTCAGGGGGATTATTGGTGGCATGCTACAATATCTCTGAGCTGAACGTGATGAATCGTTACAAACATGTGATCTTCTTGTAATTGATTGTGCTATTGTGAACTATTTTGATTTGACCAAAACTTGTTAGCAGTTTTGAAATTCAAATTTGTCACCAGTATAACATTGTTAATCTATGTTAAACATTTTGGTCCGAGTCGTGGTTAGCCACGCTTGGCACTATCTGCATGAgagatgtttttttatttgacctgtCTTTTGAAAACCTACCTAACGTGTTACAGTCGCAGCGGACATGTGTTTCACACAATGTATGGTATAATATTGTATATTGTGTTAAAATATCAGAAAATACTTTTTCTATGAAGTGATTAAAAAACAAAGCAtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU510275 lncRNA downstream 9884 85671924 ~ 85672425 (-) True G450837
TU510263 lncRNA downstream 26506 85655534 ~ 85655803 (-) True G450825
TU510256 lncRNA downstream 38783 85642836 ~ 85643526 (-) True G450818
TU510239 lncRNA downstream 63213 85615980 ~ 85619096 (-) True G450801
TU510228 lncRNA downstream 69399 85582766 ~ 85612910 (-) True G450790
TU510462 lncRNA upstream 40125 86008751 ~ 86009070 (-) True G451012
TU510463 lncRNA upstream 40485 86009111 ~ 86009433 (-) True G451013
TU510551 lncRNA upstream 167510 86136136 ~ 86136347 (-) True G451089
TU510510 lncRNA upstream 282492 86251118 ~ 86302961 (-) False G451053
TU510508 lncRNA upstream 283061 86251687 ~ 86302961 (-) True G451053
XM_036978612.1 mRNA downstream 29512 85531690 ~ 85652797 (-) True sgip1a
XM_021604598.2 mRNA downstream 170832 85502967 ~ 85511477 (-) True LOC110524719
XM_036978603.1 mRNA downstream 209887 85443496 ~ 85472422 (-) False lurap1
XM_036979076.1 mRNA downstream 239073 85435129 ~ 85443236 (-) True LOC118964733
XM_036978600.1 mRNA downstream 580387 85100248 ~ 85101922 (-) True LOC118964676
XR_005051883.1 mRNA upstream 102577 86071203 ~ 86071878 (-) True LOC118964679
XM_021604607.2 mRNA upstream 118567 86087193 ~ 86131440 (-) False LOC110524724
XM_021604608.2 mRNA upstream 118567 86087193 ~ 86174451 (-) True LOC110524724
XM_036978618.1 mRNA upstream 218761 86187387 ~ 86239684 (-) False LOC110524725
XM_036978619.1 mRNA upstream 218761 86187387 ~ 86239686 (-) False LOC110524725
TU510180 other downstream 195151 85486842 ~ 85487158 (-) True G450752
TU510133 other downstream 210429 85445681 ~ 85471880 (-) False lurap1
TU510077 other downstream 339237 85342788 ~ 85343072 (-) True G450676
TU507563 other downstream 1765668 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 1809001 83871602 ~ 83873308 (-) True G448411
TU510750 other upstream 580212 86548838 ~ 86549878 (-) True G451271
TU510765 other upstream 628726 86597352 ~ 86597744 (-) True G451286
TU511053 other upstream 796957 86765583 ~ 86765987 (-) True ror1
TU511399 other upstream 1273228 87241854 ~ 87243233 (-) True G451856
TU511933 other upstream 1529740 87498366 ~ 87499136 (-) True G452255

Expression Profile