RNA id: XM_036978619.1


Basic Information

Item Value
RNA id XM_036978619.1
length 6079
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110524725
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86187387 ~ 86248090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAATGTATATTTTCTGACAAATATTACTGCTTTGTAAATAAATAACGATAAATCAGGCGATCATTTAGTCACCTACTGCCGGCATGGTATTGTCAGGATTGGCTTGTAGCCAGCATAAAGCCGGAAAGGACCCATTAACTCAACCGGGACTGGCAGCCAGAGCAACCGTGGATGTTCGGTGTAGTGAATACGGACCTGATGACAGCGTCCTGCTCCTGATATCCCGGAGAAAAGAAATCAGGGAGACACGGTGCTGGAACTACTAACACATATCTGGTGGATTATTTCTAAGAATATATCTGAGATTTATCGTCCAGAATATGTGCATTCACGCCATTCAGTAgctgtttttgtctttttttaatGTAATTCTCAAACCCACGGCGCAGTGCTCATGAGATGAGCCTACTTGGTGGCTATAAGAAAAAGCCATGCAGTTATGATGGCTATGAATCTTTACAGTTGGTCGATAGCAGCGGAGGCTTCAATAACGGAGGAGGGAGACGCAGCGGAATCGGCTTGGTATCAGCAGCAACCCTAGGAGGACCGAAGGCAGGCCCACTGCGGGAGAACGActgcagcaccatggacagctcagATATGGACGCAAACTATGGCGGAGGCCTGCTGGACATGGTGAAGGGCGGAGCCGGCAAATTCTTCAGCAACTTCAAGGATAACCTGAAGGACACTCTAAAGGACACCTCCACCAAAGTCATGCACCAGGTGGCCACATACACAAAAGGAGAGCTGGACATTGCCTACATCACATCACGAATCATAGTGATGTCATATCCTGCAGAGGCATTGCAGATCGGCAACCAGAACCATGTGGAGGATATGCGCTCCTTTCTGGACTCACGGCACGCTGACCACTACACTGTCTTCAACCTGTCACAGCGCAACTACCGAGGCGCAAAGTTCTCCAACCGGGTCTCAGAGTGTAACTGGCCATCCCGCCAGGCTCCCAGCCTGCACAACCTGTTTGCGGTGTGTAAGAACATGCACAACTGGCTCAAACAGAACCCCAAGAATGTGTGTGTCATCACCTGCTCGGACGGCCGTGCTCCGTCGGGTGTGCTGGTCTGTGCCATGTTCTGCTTCTGCCACCTCTTCTCCAACCCAGTGCCCGCCATGCAGCTGCTGAGCGCCAAGAGACCCGGCTCTGGCCTCTGGCCCTCGCACCGGAGGTACATAGGCTATGTGTGCAGTATGGTATCAGAGAAGCCCTCCCTGCCACACTCCAAGCCCCTGGTGGTCAAGGCAGTCACCATGAGTCCAGTACCTTGCTTCAACAAACAACGCATCGGCTGCAGACCCTTCTCTGAGATCCTCATAGGGGAGACCAAGATCTTCTCTACTGCacaggactatgagaggatgagAGAGCACAGGGTCCAGGAGGGGAAGGTTGTCTTCCCTCTAGGTGTGAATGTCCAGGGTGATGTGGTCATTTCTGTCTATCATATGAGGAACACCATCGGAGGACGACTGCAGGCCAAGGTGTCCAACACCCAGATATTCCAGATCCAGTTCCACACAGGCTTCATTGCTCCAGGGACCACTGTGTTGAAGTTTACAAAGCCGGAGCTGGATGCGTGTGACTCTCCAGAGAAGTACCCTCAGTTGTTCCATGTGTTGGTGGACATCGAGGTGGAGAGCACTGACAAGCAGAAGGACCTGACCCCTCCCTGGGAACAGTTCCCTAATAAAGACCTCATCCCCAACGTACTGTTCTCCTGTCACCAGGAACACCAGGACGCACTGGCCATAGCAGAGCCAAGCCGGTCCCAAGGCGGTCTGGATGGTCGTCCTCACGGGGAGGACAGTGAGCCGTCTGATGACGAGATGCTGTCCCTTTCCAGCCAGCAAAGCCACGCTAGTGTAGAGAGACCTGGAGGGGCTCAGACTGGTACCAGGGGCCCCAAGAGACCCGAGCAGCCCCacgccccccccgctgctcctcctcctcccccagaaGAGGTGGACCTCCTGGGCCTGGATGGGGTGGCAGTGAACACCCCATGCCCCTCGCCCCAGCCCCcgaccaccaacaccaccacagaCCTCCTGGGGGACCTGTTTGGGGCCTCCCCCCAGACAGGGAGTGGGCCCACTTCGGCCCAGTCCACCCCACAGAAAAtagcccctccctccaccctcccctgccCCTATCCAGCGTTGGACCCGTTTGGGGCGGGTCCGATGCCCAAGCCCCAGGAGCTGATGGGGTCCTTCCTGGGTCCAGCAGGCCACAGCTCCCcagtcccacccaccacccctgTAGTCACCATTCAGCAGCCTCCCAACGCCATGGGAGGATGGGACTGGAACAAACCTGCAGCTCCAGGAGGTGGTTTCAGTATGGGCAGCAAGTCAGCCAGTACCAGTCCTACTGGGTCGGTCAACAACACTCCCACACACCAGGCCAAACCCAACACTCTGGACCCCTTTGCTGACATCGGAAACCTTGGGGGAAGTCTGGGAGGAGGATCTGGGTTCTCCAGTAAGCCCACCACCCCTACAGGCACCACCCCTGCCTTCCCCCCCATGGGCTCCCCCTCACGGCCTCCTCCCTCGCCCCAGCACGGTGGGGGCTGGCAGGCCAACACAGGCCTTCCCTCCTGGAAGcccggtggtggtggtgttggagggcagCCAGGGTGGCAGCCCCAACCACAGGGTCAGGGTGGTCCATCCCCCCAGGCCAAGCCCAGCACCAGCCACTCCATGCCCCACACCTCCCCCTCCAACAGACCCAACTACAACATCAGCTTCTCTGCCATGGGAGGAGGAGCTGCTCCCAATGCAGCCGGGAAACAACAGCCCAACATGGGTACCAAGCCCAAAGTTGCAATGGCTAACTTTGATGACCTGCTGTCTGGCCAAAGCTTTGCTGGAGCCAAAAAGAAGGAAGGTCCCAGGACAATAGCAGAGATGAGAAAGGAGGAGATGGCTAAAGAGATGGACCCCGAGAAACTCAAGATTCTGGACTGGATCGAGGGGAAGGAGCGTAACATCCGGGCCCTGCTGTCCACCATGCACACGGTGCTGTGGGAGGGGGAGACCCGCTGGAAGCCTGTAGGCATGGCTGACCTGGTGACCCCAGAGCAGGTCAAGAAGGTCTACCGTAAAGCTGTGCTGGTGGTCCATCCAGACAAGGCCACTGGACAGCCCTATGAACAATATGCCAAGATGATTTTTATGGAACTGAATGATGCCTGGTCAGAATTTGACAGCCAAGGACAAAAAGCACTCTactgagctgagagagagagagagggagagagagaaagagttccTGCCGACCCCCTGTGATCAATAATCAAGCCCCCACCGGATCTGAttccccccctccttctcttcttgTCACTGTCCTGTGGACTCTACTCCATAGAGACTTCAATAGCCAGACTAACAGAAAgatacctacctacccacctacctatGTATCTGGTGGCAGAACTGTCCAACTGTCCAACAAGAACTGTTCAACCCTGTCCTACATGTCCGAGTCCTGAACCAAGCAAAGAGTCCTGAACCAATGAATGCAGTCATCCAGCTGTCTATGGAGACATCGCCGGAGTGATACTGTCCACCTAACACCGGACATAGGTGATAATGACATACCTGTGGTCACAGTGTTGTTAGCCAGGTGCTATATAGAGCAGGACGATGCCAATGTTTTACACACAGTAGCATTAACACAGTGTTCCTGTCACAGTCACCTGTGTGACTTTGAAGTGAAGATCTAGAGCCAGTGTTGGGAGTGGATGGCCTATTCAATTAGGCACTGTACCACTGACTGTAAGGTCTATACACCACAGTGATCTCAGAAATACCATGTCAAATAATTGAATATAGAGCGATCACAGAGTTTCCACCTGAGTTGTCTATCTTCATGGAAAAGCTACTGTTATCTATGTTATTTGAATTACCAATTTAGATCAATGTGCTTCCACAGAACTCCACAGGAGAGTTCTAGGAGACAACAAGATAATTGCAAGCCAGGGGTAACATGTGTTCGTTCTGACAACAACCTGGAGACTCAACTTGACATGCAGTTAGTAGGTGAAGGTAGGCAGGATATTCGTTGTTGCACCCCCACCTTTACTACCTACGGTGGTTGGTTCTTGTGTTTTCTTGCCCTCCGTCTCAGAAAGGTGCAAAATGTCTTTAGCTTTAACACAGAGAGTAAACTCCGCGGCAGTCTATTACCAGTCTTAAATCTGGAATCCACATTAGGTGAAACAGCGCCACCGGTCACCCCAGGCACATTTGTtacgaagagaggagaggagttcagagagagagagcgatatccAGCATCTAGCATCTTGGTTTTTTAAAACTCTGCTGTTCTATCGAGTGTGCAATCATGTCCGAAGTACCGTCTTTGTAATATCACAAATGGACATGGCAGTTTGACCGCTATCGATTCCAGCTTTAAACATACAGTACTCACTCTCATCTTTACAGTCACTTGCtagtgggcggcaggtagccttgcggCTAAGCATGTTgtgctagtaaccggaaggttgctggttcaaatccccgcgctgactaggtaaaaaatcacttgatgtgcccttgagcaaggcacttaaccctaatttctcctgTAAATGTAGTGTCTACAGTCTGAAAGAACCTGTGTGTAAAGGATATTATCCACAATCAGAGAAAGTATCCCCTATCACACTGCTGTACTTATCTAAGAAGCTTCATCATCGTTATGTGTAGTTTTACTCTGTATTATGTTCATTTATTGACTAATTTCAGATGATTCAGTCCCTCCCAATGAAGAATCTTTCATTTTATTGCGGGTAATGTTTAGTAACATGCAGGTGGTGTATTGTCTTATTCATCCTTTGCTGTATCCTCTAAAGTGTTTACTTTTAAATCATGACAAATATTTGAAATGAAATTCTGATTGATCAAAGGCAACCTGTCATTGATGAGGGCTTTTATATTTACATTAGTTTGAAGCATATCTTTTTTGCATTCACTGACTGGGAGAACTAGTGGAAGGACTACAGGACTGACTTTATCTTGCTACACATGGAGGCACATCATTCCATAATACATTACTATACTTGAGTGTATTGGACCACTATCAAGCTTGTGAGATCCTAATATAGGCCCCCTCTAACCCTTATCTGTGTAAAACAATGCATTTGGTAGACTGGCACATCTATTTCATCTGATacaaccatttccctgttttatCCCCTGCATACTGATGTTGtcaaccagaggaggctggtgagaggagctataggaggaccaGCCTACTCTGTCAACCGTTTCCTCTGTGAAAAGGCCACACCTGAGTTGTCGACTAATGTGAGCACTGACTGACCACTGACCAGTATATAACTAAAGAGACTGTCTGTCCACTGTATTCTCTGCTTTCTCTGGTGACTATACCAATGGCAGAAGCTGTGGCTGTgtagtatgtatgtactgtatgtatgtactgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagagagagagagagagagaacccctaTAAGCTCCCTAGCTGACTGAAATCTCTTGTCTATCTGCTAACTTAGGGCAATGTTAAAACGCCAACCTCTCTCTATATAGTGGATGAGTGTTGTTGAAACTGTTGTACGTGAGGATGTGATACGATTTGGATACaactactgtatgtgtttgcTTGTCGGCTGTAAAAGTATTACTACTAAAAATGTAAACCGTttctgtcagtggaggctgctgagggggggAAGGCTCAAAACAAaggctggaacagagcaaatggaatggtatcaaccacatggaaaccatgtgtttgatgtatttaataccattccacttattccactccaaccattaccatgagcctgtcctccccaattaaggtgccaccaacctcctgtggtttctGTGTTTCTCTTTGTGGGTTCTGTTTACCCTTGATAAAGTGATAAGTGCAATGCACAAATAAATAGAGAAGATGAAAGTCAGAAACAACAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU510551 lncRNA downstream 51040 86136136 ~ 86136347 (-) True G451089
TU510463 lncRNA downstream 177954 86009111 ~ 86009433 (-) True G451013
TU510462 lncRNA downstream 178317 86008751 ~ 86009070 (-) True G451012
TU510278 lncRNA downstream 300055 85886805 ~ 85887332 (-) True G450840
TU510379 lncRNA downstream 338997 85848136 ~ 85848390 (-) True G450934
TU510510 lncRNA upstream 11432 86251118 ~ 86302961 (-) False G451053
TU510508 lncRNA upstream 12001 86251687 ~ 86302961 (-) True G451053
TU510651 lncRNA upstream 60909 86300595 ~ 86334875 (-) True G451186
TU510690 lncRNA upstream 178055 86417741 ~ 86422607 (-) True G451222
TU510711 lncRNA upstream 226414 86466100 ~ 86466638 (-) True G451243
XM_021604608.2 mRNA downstream 12936 86087193 ~ 86174451 (-) True LOC110524724
XM_021604607.2 mRNA downstream 55947 86087193 ~ 86131440 (-) False LOC110524724
XR_005051883.1 mRNA downstream 115509 86071203 ~ 86071878 (-) True LOC118964679
XM_021604604.2 mRNA downstream 156238 85682309 ~ 86031149 (-) True pde4ba
XM_036978613.1 mRNA downstream 218761 85682309 ~ 85968626 (-) False pde4ba
XM_021604611.2 mRNA upstream 13818 86253504 ~ 86258912 (-) False ak4
XM_021604610.2 mRNA upstream 13818 86253504 ~ 86259067 (-) False ak4
XM_021604612.2 mRNA upstream 13818 86253504 ~ 86260188 (-) True ak4
XM_036978623.1 mRNA upstream 111656 86351342 ~ 86547212 (-) False raver2
XM_036978624.1 mRNA upstream 111656 86351342 ~ 86547212 (-) True raver2
TU510403 other downstream 308413 85877733 ~ 85878974 (-) True G450957
TU510180 other downstream 700229 85486842 ~ 85487158 (-) True G450752
TU510133 other downstream 715507 85445681 ~ 85471880 (-) False lurap1
TU510077 other downstream 844315 85342788 ~ 85343072 (-) True G450676
TU507563 other downstream 2270746 83916136 ~ 83916641 (-) True G448452
TU510750 other upstream 309152 86548838 ~ 86549878 (-) True G451271
TU510765 other upstream 357666 86597352 ~ 86597744 (-) True G451286
TU511053 other upstream 525897 86765583 ~ 86765987 (-) True ror1
TU511399 other upstream 1002168 87241854 ~ 87243233 (-) True G451856
TU511933 other upstream 1258680 87498366 ~ 87499136 (-) True G452255

Expression Profile