RNA id: XR_005051946.1


Basic Information

Item Value
RNA id XR_005051946.1
length 55
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC118964753
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86225891 ~ 86225945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaatttgctcttttagtatttctccagtaggcTTCCTGAAGAAGAAAGCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509532 lncRNA upstream 7456 86202169 ~ 86218435 (+) True G450214
TU509516 lncRNA upstream 35412 86161421 ~ 86190479 (+) False G450199
TU509515 lncRNA upstream 35412 86187396 ~ 86190479 (+) True G450199
TU509493 lncRNA upstream 93533 86132077 ~ 86132358 (+) True G450181
TU509317 lncRNA upstream 379768 85845593 ~ 85846123 (+) True G450023
TU509609 lncRNA downstream 34035 86259980 ~ 86261531 (+) True LOC110524728
TU509632 lncRNA downstream 93240 86319185 ~ 86321493 (+) False G450273
TU509631 lncRNA downstream 93939 86319884 ~ 86321493 (+) True G450273
TU509585 lncRNA downstream 123410 86349355 ~ 86352935 (+) True G450237
TU509652 lncRNA downstream 154949 86380894 ~ 86385760 (+) True G450293
XR_005051882.1 mRNA upstream 566983 85656730 ~ 85658908 (+) False LOC118964678
XM_036978606.1 mRNA upstream 699941 85511643 ~ 85525950 (+) False dnai4
XR_002473637.2 mRNA downstream 34157 86260102 ~ 86262152 (+) False LOC110524728
XM_036978622.1 mRNA downstream 38483 86264428 ~ 86343384 (+) True jak1
XR_005051884.1 mRNA downstream 138794 86364739 ~ 86368940 (+) True LOC118964680
XM_021604623.2 mRNA downstream 868089 87094034 ~ 87103631 (+) False si:dkey-148h10.5
XR_002473639.2 mRNA downstream 868095 87094040 ~ 87107836 (+) False si:dkey-148h10.5
TU509067 other upstream 778316 85445964 ~ 85447575 (+) False G449809
TU509068 other upstream 778316 85445964 ~ 85447575 (+) True G449809
TU509026 other upstream 896949 85328572 ~ 85328942 (+) True G449774
TU507801 other upstream 1836290 84388093 ~ 84389601 (+) False LOC118964674
TU507838 other upstream 1923418 84302100 ~ 84302473 (+) True G448698
TU509709 other downstream 242593 86468538 ~ 86468937 (+) True G450333
TU509699 other downstream 328528 86554473 ~ 86556047 (+) False G450331
TU509700 other downstream 328983 86554928 ~ 86556047 (+) False G450331
TU509774 other downstream 370202 86596147 ~ 86596515 (+) True G450394
TU510894 other downstream 617931 86843876 ~ 86844271 (+) True G451408