RNA id: XM_021604611.2



Basic Information


Item Value
RNA id XM_021604611.2
length 1203
RNA type mRNA
GC content 0.48
exon number 6
gene id ak4
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86253504 ~ 86260188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTGATTGTGGACATCCGCGAGGTATCTCTCATTATGCGTGACTGTTGCCCTGTTGTTTTTCTCCATAGTTTAAATCCGACATCTGTACGAAAATAAATCTAGGAAGTTCAATTTCTCTCGCTGATTGGATGAATGAGGCTCTTTATCAACCTTGCAAACTGCAAGTTTCGTTTTTCTTTAGCCTTTATTAATCATACAGATACAGTCTGTGGTGTCTCAGGCTATAGTGGATAATGGCCAAACTGTTCCGAGCTGTGATCATGGGTCCACCAGGTTCTGGGAAGGGGACCATATCTGAAAGAATTGCGCAGAGCTTTGGACTCAAACATTTGTCCAGTGGCGACTTCCTTCGGGAGAATATAGCTGCAAATACAGagGCTGGTGTTCTTGCTAAGACCTACATAGAGAGGGGTCTGATGGTGCCGGACAATGTGATGACACGGCTCTTACTGCCCAGGCTGGAGGAGATGACTCGCCACAGCTGGCTGATGGATGggTTTCCCTGTACCCTAGCCCAGGCCAAGGCTCTGAACAGTACCTGTGATCTGGACCTGGTCATCAGCCTCAACATCCCTTATGAGACCCTGAAGGACCGGCTGAGTGATCGCTGGATCCACCCAGCCAGCGGCAGGGTCTACAACAGGGGATTCAACCCTCCACGCGTACAGGGCAGGGATGACCTCAGCGGAGAGCCTCTGATCCAGCATGATAATGACCAACCAGAGGCCCTAGTGGCCAGACTGAGGCACTACAAGGACGTGGCCAAGCCAGTCATAGACCTGTACAAGTCAAAGGGCATCCTGCACACGTTTTCTGGCACAGAGACCGACAGGATCTGGCCTTACATCAACTCTCTTCTCAGCACTAAGATCCCTAGCAGacctgagacagacacacagcacatCCCAATGCCCTGAGCAGAGCAGAGGTGACATAGTAGGAGTGCAGGCCATGCACAGGAGCTGTTAGGAGCCTCTTTAGCTTGGCAGTTgctaccaaaacatgtctgcaaatACAATATTATGCACTACATACAggtgaagtcaaaagtttacatacacttaggttgaagtcattaaaacttgtttttcaaccactccacaaatttcttgataacaaactatagttttgcaagtcggttaggacatctactttgtgcatgacacaagtaatatttccaacaattgtttacaggcagatta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU510551 lncRNA downstream 117157 86136136 ~ 86136347 (-) True G451089
TU510463 lncRNA downstream 244071 86009111 ~ 86009433 (-) True G451013
TU510462 lncRNA downstream 244434 86008751 ~ 86009070 (-) True G451012
TU510278 lncRNA downstream 366172 85886805 ~ 85887332 (-) True G450840
TU510379 lncRNA downstream 405114 85848136 ~ 85848390 (-) True G450934
TU510651 lncRNA upstream 41683 86300595 ~ 86334875 (-) True G451186
TU510690 lncRNA upstream 158829 86417741 ~ 86422607 (-) True G451222
TU510711 lncRNA upstream 207188 86466100 ~ 86466638 (-) True G451243
TU510624 lncRNA upstream 217906 86476818 ~ 86478516 (-) True G451159
TU510720 lncRNA upstream 260016 86518928 ~ 86519152 (-) True G451252
XM_036978620.1 mRNA downstream 5414 86187387 ~ 86248090 (-) True LOC110524725
XM_036978617.1 mRNA downstream 13817 86187387 ~ 86239687 (-) False LOC110524725
XM_036978619.1 mRNA downstream 13818 86187387 ~ 86239686 (-) False LOC110524725
XM_036978618.1 mRNA downstream 13820 86187387 ~ 86239684 (-) False LOC110524725
XM_021604608.2 mRNA downstream 79053 86087193 ~ 86174451 (-) True LOC110524724
XM_036978623.1 mRNA upstream 92430 86351342 ~ 86547212 (-) False raver2
XM_036978624.1 mRNA upstream 92430 86351342 ~ 86547212 (-) True raver2
XM_036978626.1 mRNA upstream 297818 86556730 ~ 86712441 (-) False cachd1
XM_036978627.1 mRNA upstream 299354 86558266 ~ 86712442 (-) False cachd1
XM_036978628.1 mRNA upstream 504460 86763372 ~ 87043134 (-) False ror1
TU510403 other downstream 374530 85877733 ~ 85878974 (-) True G450957
TU510180 other downstream 766346 85486842 ~ 85487158 (-) True G450752
TU510133 other downstream 781624 85445681 ~ 85471880 (-) False lurap1
TU510077 other downstream 910432 85342788 ~ 85343072 (-) True G450676
TU507563 other downstream 2336863 83916136 ~ 83916641 (-) True G448452
TU510750 other upstream 289926 86548838 ~ 86549878 (-) True G451271
TU510765 other upstream 338440 86597352 ~ 86597744 (-) True G451286
TU511053 other upstream 506671 86765583 ~ 86765987 (-) True ror1
TU511399 other upstream 982942 87241854 ~ 87243233 (-) True G451856
TU511933 other upstream 1239454 87498366 ~ 87499136 (-) True G452255

Expression Profile