RNA id: XM_036978624.1


Basic Information

Item Value
RNA id XM_036978624.1
length 3871
RNA type mRNA
GC content 0.53
exon number 15
gene id raver2
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86351342 ~ 86547212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGACGCCCACCTATCACTGCCTCCACTCACTTTCTATCACAGCAACTCAAGATGGCGGCAGCTTCCTCCATCCAGCCGCCGACCGTTCACTCTTTGAACCAGGAAAGTGCAAATTTCCCGGATTCTGACAGTCCGGAGAGCCGGCAGGATGAGGACGCAGCATCCGAGGGGACCAGTCTCAGAGACTTACCCGATTTGGAACCGGAGGAAATTGAGAAGAGGCTAGAGAGAACTCGCCGCGAGCTGAGCAACAGGAGGAAAATCCTCATTAAAAACCTTCCACAAGATACAACCAACCAGgaggTCCATGAGATTCTGAGAGAATACGAGCTCAAGTACTGCTTTGTGGACCGCACCAAAGGGACAGCATTTGTGACCCTGCTGAACGGTGACCAGGCTCAGGATGCCATCCGCTCCCTCCACCAGAGTATGGTGCGCAGCCGGGACATCACAGTGCAGCTCCAGCCCACAGACAGTCTGCTCTGCCTCACCAACCTGCCCCACACCTTTACTGCCCAGCAGCTGGAGGACCTAGTCCGTTCCTACGGAAACATCGAGCGCTGCTTCCTGGTCTACAGCGAGCTCACCGGACACTCCAAGGGCTACGGCTTTGTGGAATACATGAAGAAGGACTCAGCGTCGCGGGCGCGGTCGGAGCTACTGGGGCGACCAGAGGGGGAACGTGCGGTCATGGTCCAATGGACAGATGTGAACCAGTTGACTGCGGGTCACCACCTCCACTCTAAGTGCCTCTGTGTGGACCGGCTGCCCCAGGAGTACGACTCAGAAGAGCTGACCCTCCTGTTCTCAGACAAATACAAACCTGTCTTCTGCCAGCTAGCCCAGGATGAGGGCAGCCCGGTGCGAGGGTTCGGGGTGGTGGAGTATGAGAGTGCAGAGCAGGCGGAGGCCATACTGATAGAGATGGACAGAACACTGGTGGGAGGACAGGagatccgtctctctctctgcacccccGGAACCTCAGGCAGGAGCACATTGGCAGCGCTCATTGCTGCTCAGGGTGTGaTGTTGAGTAATAAGAAGGGCTTACTGCCGGAGCCCAACTTGGCCCAGCTGCTGAACAGCATGACCAACCCAGCAGCCCTACAGGTCCTCATGAGGCCTTACCACACTGGCAAACgaggagggaagTTTGGCCGGCCTCCTAGCCTGTCTCCATTCCTCAGACCCCCCCTCACAGCAGCCCTGTTCCAACTGGGGAAGGTACAGCAGAGTTCCATGTTGGGGAACGGTCTGGTGCTTCAGAATCTATTGCACATGCAGCTGGCCCAGCAGCAGCTCCTGCACATCAAAGACAAGCACATGAGCAATgtaTCTAGTCTGTTGGGTGACCCCTCTCGTCTACTTCTACAGAAAGTGCTTGGTCTCAGACCTCCAGCCCCCATGGCCCTGGGAAAGGGTCTGCTGGGTGACTCCCCCACTGaGTTAGGTCAGGAGTCCCTGCCAATGTCCAGTCAGGCCTCAGTATCGGCAGCGGGCATGATGCCCTACCTGCAGGCGCAGACACACCTGGGAACAGCCGTGGGAGGGGAACAGAACGAGGCCTGCATCTACACCACAGCCTCTGACAGGCAACCAGCCCCTCCTGGGACCATGGCGAATGCTCAGCCCCAGGGACAGAGCTACTACCTGGGTCCCCCACCACCTAAAGCTCCAGGGGGCCACCAGCCCGGCCGACACAGCTACAGCAGCACTGAGAGTAGCCCAGCTAGTGGAGCTCCCAGCAGTCAGTTCTCTCTCCTGGGTGAACCCCCTAAAGAGATGAAGCTACCTTCCAATCCATACCTGAATCTAGCTAGTGTGTTACCTGGCATGGTGCTGCAAgCCCCGACGGCCTGTAAAATGCAGACAGGGCAGCCTCTAGTTGGGGTGTACAGCAGTGCTATGCCCCCTGTCTCCCAACCCTCCGCTTCCCAAACCCCAGCACCCTACAGCACCGATACCTCTGCAGACTACAGTCACTACAGCCAGGCATACTCACAGGAGGCTGTGCAGCAGTGGTACCAGCACTACCAAGCCCAGAGCTACAGCACCGCCCCACAGGAGAGCCAAGCTAAGGACTATAGCAAGGAGCACACACAgGCTGTGGCAGCGGCGGTGCCATCCTATGGGGATTACAGCTCTTACATGCAGGCTGTCAGTCAATACTACTGTCAGCCTCCGATGACCCAGCCACCTCCCCAGGTCTACCAGCACAGAGACCCTACCAAGGAGGCTGATGTGTGTAAGTCGCTGGGTGTGTCTCTCCATGCAGTCAGTAACGGCAGTGCCCAGTCGGTGCTGCCCACCGCGGTCCTGCCAGCCTACAGCACCATGCCTATGATGTCAGGCTTCATGGCCGCGCCACCTCACGCCACACACCCACCCAGCTCCACCACACACATCCAGAGTGCCCACGCCACCAATGAATGGAACCAGTACTACTACaatcaGACGAGTCGGGGGCAGAAGCGGGAGTACCCTCACTTGGCCGTGCACAATATGACATCAGAGGGGGCGTACGTGGGTCAGCACTCCCAGGGGCTGGGGGGTCAGTACGCTGACTACTTCAAGAAGAAGAGGATCTAGAGATGACCTCTGAACCCCTGCACCCTATCTCCTaaaccatacagtacatacacagtcTCAGCTTTAGTGTTGTATTATGTtggtatacacacagacacacacacaaggcagactgacacacacacactatgttgcTTTTGTCCTGTTAAAGCCTTAACTCAGTTGGTGTAAATGTTTCTTGACTAATAATGGACATTGTTTCTAATGTATGTGAGCTGCTTCTGTATTTTAGGGTCAGTCAGTCTGCCTTGTTGGAGGCCAGTCAGTGTGTAGTCaggtttccctctctttctgtttctatcactctgtttctaaTCTCTCTGTGCGCTTTTCTACAAACGGGGGAAACTGGCCAGTGTTGCAGACAGAGTTGATTTGATGACTCACTTTAACTGACGTGTTTTTCTCTTTTTCTGATTGCCTAAGCTctccttttatctctctctttgtGGAGACCTTGAtgtagtgtgtgcgtgcgtgttgtgTCGTAAGTGTAGGAGTGATCAGCCATTCACAGGGTAGAAGAAGGCAGGGCTACCCTGGAAACTCAGAGACACAGGGTGAGGGATGTCTCATCACTGCTTTTAACCTTGAACAATGGACACTTATAGACTCCTATTGGTGTGGTGTACTAGGAAATGAATGGACACCTAACTTGGTACCTTATAGACATGACAATAGTCACTGAGTGGACACCTCTTTGGGTCGATATAGCCATGTATTATAACTAGCTAGTGGATGGACATTTCCAAGACCTAGGCCTTCTTCTTATGGCTCTGTGTATGATAGCTACAGGGTGGAAACCTTTTTACTGTTTATAATGGCTGTCGTTTTCTGTAGGGGCCATTGAACAGTGGCTCAGTCGAGGAACAGAAGGCTCCCCTCTTCTTTTTCTGCTGTTTTTTAAATGACTTTTCTGGACGGGAAGCGCTGTGGAGACACAAACCAACCAACTTTAATACTGCTTCATAAACTGCCATTAGAAATGAAACAGGAGAGTAGCCATGTTGAATTATCTCAGAGTAATTTCCATTTGGATTCAGTTAATTCAGAAAGTAAAAGATGACCGTCAATTTTCATCAAGCCATGAATCAAATTTAAATGAATCACCTTGAGATTTACGTGGTAcagcaggggtaggcaaccctgttcctggagtgctaAAGGTATTGTAGGATTTTattccaactaggcaccacacctgaccaactgagctaattgatcagttcagtgattgaCTAAATTAAACACACCTGGTCTTGCAGGTCGGTTACAT

Function

GO: NA

KEGG:

id description
K25000 RAVER2; ribonucleoprotein PTB-binding 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU510651 lncRNA downstream 16467 86300595 ~ 86334875 (-) True G451186
TU510510 lncRNA downstream 48381 86251118 ~ 86302961 (-) False G451053
TU510508 lncRNA downstream 48381 86251687 ~ 86302961 (-) True G451053
TU510551 lncRNA downstream 214995 86136136 ~ 86136347 (-) True G451089
TU510463 lncRNA downstream 341909 86009111 ~ 86009433 (-) True G451013
TU510752 lncRNA upstream 5631 86552843 ~ 86553228 (-) True G451273
TU510708 lncRNA upstream 7253 86554465 ~ 86554798 (-) True G451240
TU510709 lncRNA upstream 7701 86554913 ~ 86556046 (-) True G451241
TU510707 lncRNA upstream 8964 86556176 ~ 86556905 (-) True cachd1
TU510760 lncRNA upstream 32675 86579887 ~ 86580526 (-) True G451281
XM_021604612.2 mRNA downstream 91154 86253504 ~ 86260188 (-) True ak4
XM_021604610.2 mRNA downstream 92275 86253504 ~ 86259067 (-) False ak4
XM_021604611.2 mRNA downstream 92430 86253504 ~ 86258912 (-) False ak4
XM_036978620.1 mRNA downstream 103252 86187387 ~ 86248090 (-) True LOC110524725
XM_036978617.1 mRNA downstream 111655 86187387 ~ 86239687 (-) False LOC110524725
XM_036978626.1 mRNA upstream 9518 86556730 ~ 86712441 (-) False cachd1
XM_036978627.1 mRNA upstream 11054 86558266 ~ 86712442 (-) False cachd1
XM_036978628.1 mRNA upstream 216160 86763372 ~ 87043134 (-) False ror1
XM_036978629.1 mRNA upstream 507822 87055034 ~ 87067699 (-) True pgm1
XM_021604620.2 mRNA upstream 524619 87071831 ~ 87093894 (-) False efcab7
TU510403 other downstream 472368 85877733 ~ 85878974 (-) True G450957
TU510180 other downstream 864184 85486842 ~ 85487158 (-) True G450752
TU510133 other downstream 879462 85445681 ~ 85471880 (-) False lurap1
TU510077 other downstream 1008270 85342788 ~ 85343072 (-) True G450676
TU507563 other downstream 2434701 83916136 ~ 83916641 (-) True G448452
TU510750 other upstream 1626 86548838 ~ 86549878 (-) True G451271
TU510765 other upstream 50140 86597352 ~ 86597744 (-) True G451286
TU511053 other upstream 218371 86765583 ~ 86765987 (-) True ror1
TU511399 other upstream 694642 87241854 ~ 87243233 (-) True G451856
TU511933 other upstream 951154 87498366 ~ 87499136 (-) True G452255

Expression Profile