RNA id: XM_036978627.1


Basic Information

Item Value
RNA id XM_036978627.1
length 4151
RNA type mRNA
GC content 0.55
exon number 26
gene id cachd1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86556176 ~ 86712442 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTACTTTCACCCCCATTGTGATTCTCCGGCTCACACTTTGCTGGAGTTGGTGCGGGGTgagcaggataaaaaaaaacagcTATAGGTGCTTTCACGGATTTTATTTTCCTGCCTTCAATGATTCCCGAATATGCATTGATGTCGCCGTTTAAAATCGAGGGAGTTTGTCTTGAAAGGAGGTCCAGGTTTAGCGACGACGTTGCGAAGTTGTTCCCTTGAAGTTTTCCCCCAAGGGCTGCAAAGCGAATTCCCTGTTTACTATTCAACTACCCCAGCCACCATGGCGAGGCGGGTAGGGGGAGAAGGATCCGTGATTTTAACACAAATTCCATACACGAATTGGAGTAAGCAGTCGAGACTCCACTGGTATGACTTCATGGCGGTTTCTTGGAGCTGTATGGCAGTCATGTCGCTTCTATGTTGTGGGGTTTGTGGTGCCGAAACGGAGTTCTCGATCTTGGAGGAGGCACAAGTTTTAGCCGTTCAAATGAAAAAACTGTCCTCGCAGGAGCTTGGAGTCTTCAACATGCAGagaATCTTCAACTCATTTGTGTACACAGAAAAGACCTCAAACAGAGAGACCGAGGTACAGCAGcttgCGAAGAAGATCCGTGAGAAGTTTAACCGCTACCTGGATGTGGTGAACAGGAACAAGCAGGTAGTGGAGGCGTCATACACAGCccacctgacctctcctctgaACGCCATCCAGGACTGCTGCACCATCCCCCCCTCCATGGTTGAGTTTGATGGTAACTTCAACACCAACGTGTCCAAGACCATCTGCTGTGACAGGCTCTCCCCCACGGTCAACAGTCGAGCCTTCAACCCTGGACGGGACCTCAACTCAGTGTTGGCAGATAACCTGAAGTCCAACCCGGGCATCAAGTGGCAGTACTTCAGCTCAGAGGAGGGCATCTTCACTGTGTTTCCCGCCCACAAGTTCCACTGCAAGGGCAACTACGAGCACCGTAGCAGGCCAGTGTACGTGGCGGCGGTGCGGCCCCAGTCCAAACACATCGTGGTGATAATCGACCACGGAGTGACCATTACAGAAACACAGCTCCAGATTGCCAGAGATGCTGCCCTCGTCGTCCTCAACTCTATAGATGAACATGACAAGGTCTCGATCCTGTCCTCAGCGGAGGCTGTGCGCTCCTGTTCTCTGGACCAGTGCTATAAGAGCTACCTGTCTCCTGCCACCAGCGAGACCAAGAGGAAGATGAGCGCCTTCATCACCAACCTCAAGGCCTCCGACAGCCCTACCCAGCATGCACTGGGCTTCCAGAAGGCCTTCCAGCTCCTAAGGAACACCAGCAACGTCACCCGGAAACTCACCAacacagacatggtgatCGTCTACCTGTCGTCTGGCATCACGTCCCGAGACACATCGGAGCATGAGAAGAGAGACACCCTCCGTGTGGTCAAAGAGGAGAACCGCCACCTCAACAACTCCGTCATGATCCTCACCTACGCCCTCATGAATGAGGGCGTGACGGGTCTGAAGGAGCTAGCGTTCCTGCGTGACCTAGCGGAGCAGAACTCTTTGAAGTACGGCGTCCCGGACCGCTCAGCGCTACCCGTGGTGAAGGGGAGCATGATGGTCCTGAATCAGCTCAGTAACCTGGAGACCACCGTGGGACGCTTCTACATCAACCTGCCCAACCGCATGATAGACCTGTCCTGCTTCAGCCTGCCCTACCAGGACCCCATGGGAGACGGTTTCATCATGACGGTGAGCCGGCCCTGTTACTTTGGCAACCTGTTGCTGGGTGTGGTTGGGGTGGACGTGAACCTAGCCTACATTCTAGAGGACGTCACCTACTACCAGGATTCCTTGGCCTCCTACACCTTCCTCATAGACAACAAAGGTTACACCCTGATGCACCCGTCCCTCACGCGGCCCTACCTGATGACAGAGCCTCCCCTCCACACTGACATCATCCACTATGAGAACATCCCTGGCTTCCCCATAGTACGGGACAACATTCTCCGTCTGCCCCTGGGTAGTCAGGTGATAGCTGTGCCCACCAActcctctctgtcctggcacACCAACCGCCTCCGAGACCctagcaaggatgcctacaacgTCAGTTACACATGGAAACTGGTCCAGGACAAGTCGTTCATCCTGTGCATAGTGAACGTCCAGCCAGAGATCCCTGTGAAACACCTGAAGAACCTGAACACTGCTCCCAGCTCCAAGCTGCTCTATCACCGCCTGGACCTGCTGGGTCAGCCCAGCTCCTGTCTGCACTTCAAACAGCTGGCCACTGTCGagaGTCCTACAGTGATGCTGTCTGCAGGGAGTTTCTCCTCGCCCTACGAACACCTCAGCCAACCAGAGACCAAACGCATGGTGGAACACTACACTGCCTACCTCAGTGATAACACACGTCTCATTGCCAACCCTGGACTCAAGtcGTCGGTCAGGAACGAGGTGATGGCGACCAGTCACGTCACAGATGAATGGATGACACTCATGGAGATGAGTAGCCTCAACTGCTACATTGTGCGCCGTTACATAGCAACGCCCAATGGAGTGCTTCGGATTTACCCCGGCTCACTCATGGACAAAGCCTTCGATCCGTCCCGGAGACAATGGTACCAACATGCAGTGGCGAACCCTGGCCTCATCACCTTCACCGGGCCTTACCTGGATGTGGGCGGGGCCGGATACGTGGTCACCATCAGCCACACCATCCACACCTCCAGTTCTCAGATGGCCTCAGGGTATGCAGTAGCAGTAATGGGGATAGACTTCACACTGCGTTACTTCTACAAGGTTCTGCTGGACCTGCTACCCATCTGCAATCAGGACAAGGGCAACAAGATCCGgtgtttTATTATGGAGGACAGGGGTTATTTGGTGGCCCACCCCACCCTCATCGATCCTAAAGGTCACGCTCCAGCCGAGCGGCAGCACATCACACACAAGGAACCGCTGGTGGCCAACGACATCCTGAACCATCCTAACTTTGTCAAGAAGAATTTGTGCAACAGCTTCAGCGACCGCACAGTCCAACGTTTCTACAAGTTCAACACCAGCATCATTGGTGACTTGACTAACCTGGTCCACGGGAGCCACTGCTCCAAGTACCGTCTGACTCGTATCCCTGGCACCAACGCTTTCGCTGGCATCGTCAACGAGACTTGTGATTCGCTGGCTTTCTGTGCCTGTAGCACCGTGGACCGCCTCTGTCTCAACTGTCACAGGATGGAGCAGAATGAGTGTGAGTGTCCATGTGAGTGCCCCCTGGAGGTCAACGAGTGTACTGGCAACCTCACCTACACTGAGAACAGGAACCCCAGCTGTGAGGTGCACCAGGAGCCCCTGTCTCTGACGGTGATTGACTCCAGTCTGCAGGACACCCTGCACCAGTGTATCAACACTCGCTGCAGCCAGCGCTTCACTAGCAGTGACTGTTTTGGCGTGTTGGACTGTGAATGGTGTATGGTGGACAATGATGGGAAGACCCACCTGGACAAACCTTACTGTGCCCTGCAGAAGGAATGCTTCGGGGGTATCCTCGGGGCCAAGAGCCCTTACATGGACGGCATAGGGATGTTGGaTGAGGAGGTAGCGTCTCTGAACATGATTCGGAGTGCACCGGTAGGGCCGGTTGCTGGGGGGATTATGGGCTGTATCATGGTGCTGGTGTTGGCTGTATACGCCTACAGACACCAGCTCCACCGGCGCTCACATCAACACATGTCCCCTCTGGCCGCGCAGGAGATGTCAGTGCGGATGTCTAACCTGGATAATGAGCGAGATGAGGACAGTCATGAAGACAGGGGAATCATCAGCAACACACGGTTTATTGCTGCGGTGATTGAGAGACACACCCACAGCCCCGAGCGCAGGAGGAGGTACTGGGGACggtcagggacagagagtgaCCACGGTTACAGCACCATGAGTCCTCAGGAGGACAGCGAAAACCCTCCCTGCAACAACGACCCCTTGTCGGCCGGCGTGGACGTGGGGAACCACGATGACGACCTGGATCTGGACACGCCCCCTCAGACGGCGGCGCTGCTCAGCCACAAGTTCCACCCATACCGCCACCCGCCCCACCACCAGCTCCACACACACCACCTGCAGGCAGCAGTCACTGTGCACAGTGTGGACACAGAGTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU510707 lncRNA downstream 1361 86556176 ~ 86556905 (-) True cachd1
TU510709 lncRNA downstream 2220 86554913 ~ 86556046 (-) True G451241
TU510708 lncRNA downstream 3468 86554465 ~ 86554798 (-) True G451240
TU510752 lncRNA downstream 5038 86552843 ~ 86553228 (-) True G451273
TU510745 lncRNA downstream 19682 86538142 ~ 86538584 (-) True G451266
TU510799 lncRNA upstream 248 86712690 ~ 86712938 (-) True G451320
TU510803 lncRNA upstream 5521 86717963 ~ 86718212 (-) True G451324
TU510809 lncRNA upstream 9829 86722271 ~ 86722521 (-) True G451330
TU510824 lncRNA upstream 24408 86736850 ~ 86738039 (-) True G451345
TU510832 lncRNA upstream 36350 86748792 ~ 86749083 (-) True G451353
XM_036978623.1 mRNA downstream 11054 86351342 ~ 86547212 (-) False raver2
XM_036978624.1 mRNA downstream 11054 86351342 ~ 86547212 (-) True raver2
XM_021604612.2 mRNA downstream 298078 86253504 ~ 86260188 (-) True ak4
XM_021604610.2 mRNA downstream 299199 86253504 ~ 86259067 (-) False ak4
XM_021604611.2 mRNA downstream 299354 86253504 ~ 86258912 (-) False ak4
XM_036978628.1 mRNA upstream 50930 86763372 ~ 87043134 (-) False ror1
XM_036978629.1 mRNA upstream 342592 87055034 ~ 87067699 (-) True pgm1
XM_021604620.2 mRNA upstream 359389 87071831 ~ 87093894 (-) False efcab7
XM_021604621.2 mRNA upstream 395558 87108000 ~ 87144341 (-) False alg6
XM_036978630.1 mRNA upstream 395558 87108000 ~ 87144341 (-) True alg6
TU510750 other downstream 8388 86548838 ~ 86549878 (-) True G451271
TU510403 other downstream 679292 85877733 ~ 85878974 (-) True G450957
TU510180 other downstream 1071108 85486842 ~ 85487158 (-) True G450752
TU510133 other downstream 1086386 85445681 ~ 85471880 (-) False lurap1
TU510077 other downstream 1215194 85342788 ~ 85343072 (-) True G450676
TU511053 other upstream 53141 86765583 ~ 86765987 (-) True ror1
TU511399 other upstream 529412 87241854 ~ 87243233 (-) True G451856
TU511933 other upstream 785924 87498366 ~ 87499136 (-) True G452255
TU512060 other upstream 1061780 87774222 ~ 87805865 (-) True LOC110523029
TU512143 other upstream 1147685 87860127 ~ 87866464 (-) True G452442

Expression Profile