RNA id: XM_021604620.2


Basic Information

Item Value
RNA id XM_021604620.2
length 2515
RNA type mRNA
GC content 0.47
exon number 14
gene id efcab7
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87071831 ~ 87093894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataagtgaaaataTATGGGAACCTTTCACATTTCTTGTTCCTTCCGATGTCCTTTTCTCAGTGCGTCGCGAAATGTTTGTGTACATAGCAACTAAACTACCGTTATTTCTGGTCCAAACTGTTGGAAGCAGTCTTTTTTTCAACGAGAATGTCTCTACAGGCATCTTCTCAGTCTATCGGGATGCAGAAATGTACTGATGAGGAAACGTTCTACATGCACTGCAGAGCTGCCTACCTGACTGTATTTAGGTCTAGTCTGGCCAGTATCAGCTCCAAACATCAGCTATGCCGTGTTCTCCAGCAGGCAGGCAGAAATCCATCCCAGGCAACTCTCAACAAACACTGGACCCCAAGTACCACTAAGCTGAACTTTGATGATTTCTGTGAGATAGTGAAGAATGAGAGGCCGACAGAGGTGCACGAGTTGATGAGAGCCTTCAGAAAGATGGACATTAATGGAGATGGCTACATCTCACACAATGAACTACACATAGTCCTCACTTCAAGAGGTGAAAAGATGGCTGCCAAGGAGGTGGATGCCATTTTTTCATTAGCTGATACCAACAAAGATGGCAAATTGGACTATGCCGAGTTCTGCAGACTGTTGGAGTCCACGGCAGAGCAGTGTCAGATTGCAGCTCTGGAGAGACTGGAGGCTGATGCCAAGCTGAAGAGGCAGAACTTTGGCAACGAGTTAGACAGCCCTCCAAAGAGCTTAGCGTCCACCGCTGTGACTGTCCCCCAGCCACCTCACAAAACCGAGCCGGACATCACACTGAAGAAAGACAGCAGATCGTCGTCCCGGCCCTCCTCAGCTCGCAGTAGACGGTCGTCACTGTCTAACGCCATCACCATGGCAGCCAGCAACACTAAGAGCGTCAAGCTGGCAGAGCCCACATCTATACAGGACTGGCATCACACCTGTATGAAGGGCAGTTTCTTCCTTGAGGAGGATGGAGGCATCACGTCCCTGCAATACCGTCTCACCGTCCCCCAGACAGCCACCGTCTACCTCACCATCAGACCTCTCAACCTTAGCCAGAGACTTGAAAAGCCCTCATCCTGGATGTCGGTGGACACAGCTGTCtttgtggtgtcaggaaaagaCACTAAAGAGGACTCCACTTTGGTGTGTTTCACTGAGTCAAGAGACAAAGAGAAGTGTTGCTGGAAGGGGGAGCTGAGTGCTGGTACCTACTGCCTCCTTCCCTTCACCACGAGCTGTAGGCTGAGGAAGAGGACCAGGAAGAGTGTGTCTAAACCTGTCACGCTGGTCAACAGGACTGACACGGGGGAGCTGGACCTCACTAGGGACTTCAGGGGGGCGCTGTCTGATATCTTTGAGGTGATAGACCTGGATGGGAACGGCCTCCTCAGTCTGGAGGAGTACAACTTCTTTGAGCTCAGGACCAGTGGAGAGAACTGTGATGAGGAAGCATGGGCTGTCTGCAAAGAGAACTTTGACACCCGGAAGAACCAGCTCAGTCGTCAGGGCTTCATGGAGCTCAACCTGATGGAGGCCAGCGAGAGGGGGGGAGACCCCACAGACCTCTGGGTAACGCTGGAGGCCATGGGCTACAACCGCAATCTGGAGATGGTGGAGGCATGTCCGTTCCTGATAGATGTTTACTGTGAGGAGGGTCAGTGTACTCTGCAGCCGGTCAGTCTGGAGTCAGGCCACAGGATCCTGAACACAGCCCTGCAGAGGTCCATCACggccaggtcagaggtcaaaacCCTCAGGGGTCAGGAGAACGTCCTGGTCTACACCTACAGAGGAGAACACAGGATCTCCACCGTCATCGCCAACAAGACCAACCAGAAGGTGACGGTGCACGTGAACAACGAGCAGAGTAAGaactgcagcagcagcagagggatGAGTGTGTTCGCTGTGGAGGTCCCTGCTAGAACCAAGATGGTGTGCCAGCATGTCCTGCCCATCAACGAGCACCAGGAGTGGACTTACAACTGTGTGGAGAGCATTATACCATGCCAGTGAAACAGTGATAAGACAGCAACTCTAATATTACCATGGTACTTTATAAAACATACTAATAGAAAAGGGACAGTGGGCCAAAAGCTATTTATAGCCAACGGGAAACTGAATTAATGAATAATACTATATGTATGTAACATGTGCCTTTGTGATAGTGGTGTGTAGTTGTGTTTTTCCATGGAATTGAATGAAATTATGTTGATTTTGAAAAATCTTTAATGGAAATGGAACTATAATAGAGATACTGTAGATAATGATACTGAACTAATATTTGCACTGATTTATATTATTTTTAACACTCAATTTTCATTGTACTGTGACTCCTATAATAATGTGTATAATTTTGCAATAGTACATAGTTTTATCACATGCCTTTATATACAaatatgatgtgcattgtaacGTGTTTTAACAAGTGTGCTCAAGTCTCATATTTACAAACAATATGCTATATAACAATATTACATTATTACGTATGTCTGTCAAAACTCAAAataaatctcaaatttaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511182 lncRNA downstream 69434 86999152 ~ 87002397 (-) True G451677
TU511165 lncRNA downstream 95285 86975159 ~ 86976546 (-) True G451662
TU511157 lncRNA downstream 105310 86962194 ~ 86966521 (-) True G451656
TU511249 lncRNA upstream 37123 87131017 ~ 87133651 (-) True G451740
TU511253 lncRNA upstream 44553 87138447 ~ 87140841 (-) True G451742
TU511255 lncRNA upstream 44701 87138595 ~ 87142509 (-) False G451743
TU511254 lncRNA upstream 48325 87142219 ~ 87142676 (-) True G451743
TU511427 lncRNA upstream 154711 87248605 ~ 87248829 (-) True G451860
XM_036978629.1 mRNA downstream 4132 87055034 ~ 87067699 (-) True pgm1
XM_036978628.1 mRNA downstream 28697 86763372 ~ 87043134 (-) False ror1
XM_036978627.1 mRNA downstream 359389 86558266 ~ 86712442 (-) False cachd1
XM_036978626.1 mRNA downstream 359390 86556730 ~ 86712441 (-) False cachd1
XM_036978623.1 mRNA downstream 524619 86351342 ~ 86547212 (-) False raver2
XM_021604621.2 mRNA upstream 14106 87108000 ~ 87144341 (-) False alg6
XM_036978630.1 mRNA upstream 14106 87108000 ~ 87144341 (-) True alg6
XM_021604627.2 mRNA upstream 57931 87151825 ~ 87153819 (-) True foxd3
XM_021604628.2 mRNA upstream 297767 87391661 ~ 87401413 (-) True atg4c
XM_021604639.2 mRNA upstream 325336 87419230 ~ 87424068 (-) True angptl3
TU511053 other downstream 305844 86765583 ~ 86765987 (-) True ror1
TU510765 other downstream 474087 86597352 ~ 86597744 (-) True G451286
TU510750 other downstream 521953 86548838 ~ 86549878 (-) True G451271
TU510403 other downstream 1192857 85877733 ~ 85878974 (-) True G450957
TU510180 other downstream 1584673 85486842 ~ 85487158 (-) True G450752
TU511399 other upstream 147960 87241854 ~ 87243233 (-) True G451856
TU511933 other upstream 404472 87498366 ~ 87499136 (-) True G452255
TU512060 other upstream 680328 87774222 ~ 87805865 (-) True LOC110523029
TU512143 other upstream 766233 87860127 ~ 87866464 (-) True G452442
TU512158 other upstream 800838 87894732 ~ 87895212 (-) True G452457

Expression Profile