RNA id: XM_021604625.2


Basic Information

Item Value
RNA id XM_021604625.2
length 2068
RNA type mRNA
GC content 0.48
exon number 9
gene id si:dkey-148h10.5
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87094034 ~ 87107836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTTCCGGAGGACTCAAATTCTCTTGCAAACGCTGTACGCGCCAAATTTGTTACCATTGGACTGGGCCTTTCAGAAGTTGTTTGTCAACTATCAACAACAAAATGCCAGTCAAAAGAACACTCCGAATGGAGGACAATGACAACCAGACACCAGCCAAGAGACCTGCACCAAACAGGAACTACTCCCCATTGACTGGTACCTACCAGATGACTCCAAGTGCAGCTCCCCAAGCTGGTAAAGCCAAAGCCAGTGGGAAAACTGCTAATTCCCATAAACCACAGGTGCCACAGACGGAAGTGGAAATACTACATGCCATCAGCTCTAAACTGGAAGCATCAGTTGGAGCATTTGTCAAGGCAAGGCAAGAGATGAAGAAAATAGTGGCTGCAGAGGGCAGCAGTGAGCTGAAGAGTTTCTTTTCTAGAGGCTCTGCTGACCTGAAGACCGAACTGAGGAGGCACAGAGAACTTGCATCCAAAGCAGAGTCCAGCCTTGGCGTGAATGGTGCTGGCCAGAGCCGTTTGCAAGGCGTTGTCCAGACTGGCAGCTCCTCTGATTTCCTGAAATCCATAATGGCCTTATAAAGGTTTCTGCTTAGGGAGCCCCTCAACTCAACTCTCAACAGACCGACGGCAAATGGAATAGCAGCTCTGCCTTCTCTCACGTGGTGGTGTACATGTTTCCTCTTCGGAGACGGCTGGGTGATGAATATAGAATCTAAGCTGTCATTTGTGAGGCAGAGTGATGTCTTGGAGGCTGCCTGTCAGTCATTGGGGGGAATGTGTCAAAGTAAAATGCCTTAGACATCAGACAGGTTTACGCCGAACCCTCACCGCTGACAAATGTTGACTCTACAATAACTGCCGCTATACAGTGCTGAGAAAATGTTCTTTCAGTGAGCGAACGCCCTCGTCCCATTAGACCTGATGCTATATGAAATCCACCCCCACCATGTCCTCTAGCTACCTTGAAAGGTGAAGGAAACTGGAATATAGGCTCTGAGAGgctagtgcacacacacacttcattctTTGGCTCTTTATTTGGCTGTGCCAGGGAAAGCAGAGGGCCTCTTACAGCCTGAGACCTAAGCAACAGCTGGTGTGCACAGACACATTTCCTATTTCTGCCCAAGGTAGATCATGTAACTCTCACTCTATCAGCCTTGCAGGCCGTGTGAAGGACAAAGCGAGCACATCCATAAACAAAACTAATGTTTTCATACGGGCCCTCTGGAGGTAAAAGAGGGGACCCTTGGCGGTCTTACACCCGCCACCTCTCCCGCTACTTCAACCCACCTTCTCCACCTTGCCTTCTACCCCCATCACCTTAGACCTCTACCGCACTAACCCTTTCCTCCTAGAGGGTCCCACTCTCCCTgggtctcacccccccccccccccccagcgctCCACTCTTCATTTGACTGTGGTGCATGAAGCAGGTGCGGCAATGATGTTACCTGTGACTCATCCTCCCTGTCCCAACTGACACATACATGTTAACACTGGAGCATCGGTACATTGCTGCAAGCAACCCATCTGTTTAGATACTACCTTCCTCCCAGTCGATCCACAGTAGTCATTTTAAAGCCACAGGCCCCTGGTTGTCCCACCCTTCGTATTATAGGATGCAGGGCCAGCGGCTGCAGATATACAGTGTAGCAGCGGCCCTCAGTGACCCGATAACATTTATAGTAGTAATGGATTTTTTTTAATGGCTGTCATTAACTCACAGGCAGAGAGGGGAAAGATTGCTTGTACTGTTTTTTTTCCTGTGGTATTTCAGCTTTATGACATTATGTTCAGATATGTCATCTTCCATCATCCTTGTTTGAGGGCCTGTCTGACCTGCCACTACTTTTTTGTGTTGAAATGCATAGCCCTTTTGTGCTTTGTGGACTCCTTGTtttccaattggctcattaatcccccctcctctcccctgtaactattccccaggttgttgctgtacaTGAGAATGTGTtgagtcaacttacctggtaaaataaaattgTCTAGGTGTTGTAATGAATTTTTCAGCTAAATTAAATGGTTGGAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511021 lncRNA upstream 3694 87088554 ~ 87090352 (+) True G451524
TU511003 lncRNA upstream 38578 87055002 ~ 87055468 (+) True G451509
TU510996 lncRNA upstream 50682 87042593 ~ 87043364 (+) True G451502
TU510957 lncRNA upstream 113512 86980245 ~ 86980534 (+) True G451463
TU510949 lncRNA upstream 118221 86975137 ~ 86975825 (+) True G451459
TU511375 lncRNA downstream 129788 87237624 ~ 87237877 (+) True G451853
TU511429 lncRNA downstream 160108 87267944 ~ 87268218 (+) True G451862
TU511436 lncRNA downstream 167987 87275823 ~ 87276275 (+) True G451869
TU511465 lncRNA downstream 210174 87318010 ~ 87318237 (+) True G451897
TU511474 lncRNA downstream 229864 87337700 ~ 87337910 (+) True G451906
XR_005051884.1 mRNA upstream 725106 86364739 ~ 86368940 (+) True LOC118964680
XM_036978622.1 mRNA upstream 750662 86264428 ~ 86343384 (+) True jak1
XR_002473637.2 mRNA upstream 831894 86260102 ~ 86262152 (+) False LOC110524728
XR_005051946.1 mRNA upstream 868101 86225891 ~ 86225945 (+) True LOC118964753
XR_005051882.1 mRNA upstream 1435138 85656730 ~ 85658908 (+) False LOC118964678
XM_036978644.1 mRNA downstream 293934 87401770 ~ 87482935 (+) False dock7
XM_036978634.1 mRNA downstream 293935 87401771 ~ 87493654 (+) False dock7
XM_036978635.1 mRNA downstream 293935 87401771 ~ 87493654 (+) False dock7
XM_036978636.1 mRNA downstream 293935 87401771 ~ 87493654 (+) False dock7
XM_036978637.1 mRNA downstream 293935 87401771 ~ 87493654 (+) False dock7
TU510894 other upstream 249775 86843876 ~ 86844271 (+) True G451408
TU509774 other upstream 497531 86596147 ~ 86596515 (+) True G450394
TU509699 other upstream 537999 86554473 ~ 86556047 (+) False G450331
TU509700 other upstream 537999 86554928 ~ 86556047 (+) False G450331
TU509709 other upstream 625109 86468538 ~ 86468937 (+) True G450333
TU511538 other downstream 293986 87401822 ~ 87412639 (+) False dock7
TU511578 other downstream 312968 87420804 ~ 87422836 (+) True G451959
TU511628 other downstream 412388 87520224 ~ 87630763 (+) False kank4
TU511702 other downstream 510296 87618132 ~ 87620643 (+) True G452064
TU511745 other downstream 600503 87708339 ~ 87708652 (+) True G452097

Expression Profile