Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021604627.2 |
| length | 1995 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 1 |
| gene id | foxd3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 87151825 ~ 87153819 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0060351 | cartilage development involved in endochondral bone morphogenesis | biological_process |
| GO:0048484 | enteric nervous system development | biological_process |
| GO:0048485 | sympathetic nervous system development | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0050935 | iridophore differentiation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0001822 | kidney development | biological_process |
| GO:0048846 | axon extension involved in axon guidance | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0048937 | lateral line nerve glial cell development | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0001658 | branching involved in ureteric bud morphogenesis | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0051090 | regulation of DNA-binding transcription factor activity | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0008301 | DNA binding, bending | molecular_function |
| id | description |
|---|---|
| K09397 | FOXD; forkhead box protein D |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU511254 | lncRNA | downstream | 9149 | 87142219 ~ 87142676 (-) | True | G451743 |
| TU511255 | lncRNA | downstream | 9316 | 87138595 ~ 87142509 (-) | False | G451743 |
| TU511253 | lncRNA | downstream | 10984 | 87138447 ~ 87140841 (-) | True | G451742 |
| TU511249 | lncRNA | downstream | 18174 | 87131017 ~ 87133651 (-) | True | G451740 |
| TU511213 | lncRNA | downstream | 56812 | 87040819 ~ 87095013 (-) | True | G451706 |
| TU511427 | lncRNA | upstream | 94786 | 87248605 ~ 87248829 (-) | True | G451860 |
| TU511430 | lncRNA | upstream | 114128 | 87267947 ~ 87268208 (-) | True | G451863 |
| TU511458 | lncRNA | upstream | 143037 | 87296856 ~ 87299127 (-) | True | G451890 |
| TU511503 | lncRNA | upstream | 229067 | 87382886 ~ 87383098 (-) | True | G451935 |
| TU511504 | lncRNA | upstream | 229435 | 87383254 ~ 87383483 (-) | True | G451936 |
| XM_021604621.2 | mRNA | downstream | 7484 | 87108000 ~ 87144341 (-) | False | alg6 |
| XM_036978630.1 | mRNA | downstream | 7484 | 87108000 ~ 87144341 (-) | True | alg6 |
| XM_021604620.2 | mRNA | downstream | 57931 | 87071831 ~ 87093894 (-) | False | efcab7 |
| XM_036978629.1 | mRNA | downstream | 84126 | 87055034 ~ 87067699 (-) | True | pgm1 |
| XM_036978628.1 | mRNA | downstream | 108691 | 86763372 ~ 87043134 (-) | False | ror1 |
| XM_021604628.2 | mRNA | upstream | 237842 | 87391661 ~ 87401413 (-) | True | atg4c |
| XM_021604639.2 | mRNA | upstream | 265411 | 87419230 ~ 87424068 (-) | True | angptl3 |
| XM_021603307.2 | mRNA | upstream | 351930 | 87505749 ~ 87520049 (-) | False | usp1 |
| XM_021603308.2 | mRNA | upstream | 351930 | 87505749 ~ 87520050 (-) | True | usp1 |
| XR_005051885.1 | mRNA | upstream | 504110 | 87657929 ~ 87659520 (-) | True | LOC110522895 |
| TU511053 | other | downstream | 385838 | 86765583 ~ 86765987 (-) | True | ror1 |
| TU510765 | other | downstream | 554081 | 86597352 ~ 86597744 (-) | True | G451286 |
| TU510750 | other | downstream | 601947 | 86548838 ~ 86549878 (-) | True | G451271 |
| TU510403 | other | downstream | 1272851 | 85877733 ~ 85878974 (-) | True | G450957 |
| TU510180 | other | downstream | 1664667 | 85486842 ~ 85487158 (-) | True | G450752 |
| TU511399 | other | upstream | 88035 | 87241854 ~ 87243233 (-) | True | G451856 |
| TU511933 | other | upstream | 344547 | 87498366 ~ 87499136 (-) | True | G452255 |
| TU512060 | other | upstream | 620403 | 87774222 ~ 87805865 (-) | True | LOC110523029 |
| TU512143 | other | upstream | 706308 | 87860127 ~ 87866464 (-) | True | G452442 |
| TU512158 | other | upstream | 740913 | 87894732 ~ 87895212 (-) | True | G452457 |
