RNA id: XM_021604628.2


Basic Information

Item Value
RNA id XM_021604628.2
length 2778
RNA type mRNA
GC content 0.47
exon number 11
gene id atg4c
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87391661 ~ 87401413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTACGTTGCAGAATGACGCAAACACCGCGAGAGTCGCGTGCTTGGCTTGTGGTTTTGCTTCCTCAAAATGTAAACACTGGGAGCTGGTGAGATAGCCAGATACACACATTTCAGGAAGACAGTGCGGTTGTTAACGACGCTGGGATGAGTTCAATTTCCCGGTGGTCAAAATGGAGAATAAAGGGACTGATGAGGTGGAGAAATTGAAGACAAAGTTCTTGTCAGCATGGCACAATGTGAAGTACAGTTGGGCTTTGAAGTCAAAAACCTACTTTAGCAGAAATTCCCCAGTGTTCCTCCTGGGGAAATGCTACCATTTTAAGGCTGACGATGAGGATAGCCCAACAGAGAGCTGCAGCACTGAGGTCCGTGATGCACCCCCCGCCACAGGGGGTGACGACGTGGAGGCCTTCCGGAGGGACTTTGCGTCCCGTGTGTGGTTGACCTACAGAGAGGAGTTCCCTGCCCTGCCAGGCTCCTCCCTAACCTCTGACTGTGGCTGGGGCTGTATGCTGAGGGCGGGACAAATGATGCTGGCTCAGGCCCTCATACTACACTTCCTGGGCAGAGACTGGACGTGGTCGGAGGCGTTGGCCCTCCAGCCTCTGGACACAGAGACCTGGACCACCAGTGCAGCCAAGCGTCTGGTGGCCAGCCTGGAGGCCTCACTGCAGGGAGAGAGGCCCTCGTACCCAGGACCAATGCTTCATGCTCCAGGGGCCCCTGGAAGAGTGGAGGAGGCTGACATCCACCAGAGGGAGGTCTATCACCgcaccctggtgtcctggcttgGGGACAGCCCTCAGGCACAGCTGGGTGTCCACAGACTGGTGGAGTTAGGCCTGGTGTCTGGGAAACGGGCAGGGGACTGGTATGGCCCCGCCGTGGTGGCACACATCCTGAGAAAAGCTGTAGAGGAGGCAACAGACCCTGGGCTGTCGGGCATAACTGCTTATGTCTCCCAGGACTGTACAGTTTACAGTGCTGATGTCATCGATAGCCACCAGTCGTGTGTGGCTGGGGGAGCAGATGCCCTGCCCCTTACTGACAGCCGGGCGGTCATCATCTTCATCCCAGTCCGACTGGGGGGAGAGAAGACCAACCCAGAGTACTTCAGCTTTGTCAAGAGCATATTGAGTCTGGAGTACTGTATTGGTATCATCGGGGGCAAGCCCAAACAGGCCTGCTACTTCGTGGGCTTTCAAGATGACAGCTTGATTTACATGGACCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACTAACCATTTCCCTCTTCAGTCGTATCATTGCCCGTCGCCAAAGAAGATGCCTTTCAGTAAGATGGACCCCAGTTGTACCATAGGCTTTTACTCTAGAAGTGTCCAGGACTACCAGACAATCAGCCACGAACTGTCCAAGGTGTTGCTGCCGTCAGCGAATGAGAAATACCCAGCATTCACTTTCATGCAAGGTCACGGAAGAGATTACAACCTTTCGGCGGAGTTGACCCCGGAGAAGAGGGAATGGCCGTTTATCCGTGACCCACAGAGAGCAGCCGCTACCGCTGGAGACTTCGTGCTGCTCTGAAGGTCAACGCTGCGGTCAAAGGTCATGGTCAGAGACTTTTAAAATGACCAGCGAAGTGACTTTACCAGACAGACTGAAACCTGCTTATCCAAGGCCAGGACTCTATTCCACAATTATGAAAATACATAGCCAATATAAAAATGTTCTCACACCAGCATTCATGACTTAATACACGAAACCTAAACATATTAAAATTGTTATCTTATACTGTAGATAGTTGCTGTTAGTTTTGATTGTTCTGTGGAAATCGGTAACATAGGGCAAAGGATCAAACAAACATACCATGGGTCTGTAAGCGCTATGAGGTTGTACTGAGGGTTATGCGATGTACTGTATCTTGTACACTGTGCATTATTGATACAGATGGATAATTGGGTGCCTTGGCTTATTGGAAGACAAGCTCTCAACCAAATATAAAAGACATTTGCCTTGTAAGGAAATCAGTTCTGCACTTTAGGAGGCGGTAGTCATCAGAGGTTATGTGTGAGGATATCACTGTGGTTCTATAGCTGGGCCTTACAACACAGTGAAGTGCTATAGGAGAGTGTCATTCAGACTATTTTTTTTAGAAGTGTGTAGAAATACTTTGATAGTCCTGAAGGTTTTAATGGTCAAATATGTTCTAGGGTTACACTCTTATGATTTCAAGACCACATTTACATTAGGAGGAAAAGTTTTAGATTGCCAAATCATTTCAAGACGTCTTTGAATTTTCAAACAGCCATTTGAGAATTTCTGACCTTGAAAGGATACAGTACTTTTGTtcatgcattttttttatttcccaAAGCAAATTAATTGTCTAAATGGAAAGTTTTTCCAATGTCACAGTCAAACCCATCTATAGAGGTGACCGGTACAATGCCTTGCTTCTCTTTGTACTTTCACAATAATTACGAACTTTAAATATACGTTACCCACATACTAAGTTAATTGAGTAATCTCATTTAAATGGTGATATTTGTAGAAGCCACAATTTCTTATGTGGGTTGAATGTAATTGAAATGTTCAACTGTAAATGCATAAAGACAGCTACATTCTACCCGTGTTGCAAAATGTTCCCAGAATTCATCTCTTTATCACAGTATTGATTCTCACACTGCTGTGCAGCAAAGTAGAATAAAGTCATAAAACCTTTTGGATTTTCTGATCTGTGCACCTCTTTACAAgcattaaagagagagagatatctctTGGAAAAACA

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511508 lncRNA downstream 3122 87388269 ~ 87388539 (-) True G451940
TU511504 lncRNA downstream 8178 87383254 ~ 87383483 (-) True G451936
TU511503 lncRNA downstream 8563 87382886 ~ 87383098 (-) True G451935
TU511458 lncRNA downstream 92534 87296856 ~ 87299127 (-) True G451890
TU511430 lncRNA downstream 123453 87267947 ~ 87268208 (-) True G451863
TU511954 lncRNA upstream 65491 87466904 ~ 87467595 (-) True G452274
TU511926 lncRNA upstream 91723 87493136 ~ 87493960 (-) True G452248
TU512017 lncRNA upstream 182778 87584191 ~ 87666309 (-) False G452330
TU512016 lncRNA upstream 194116 87595529 ~ 87666309 (-) True G452330
TU512035 lncRNA upstream 225840 87627253 ~ 87690633 (-) True G452348
XM_021604627.2 mRNA downstream 237842 87151825 ~ 87153819 (-) True foxd3
XM_021604621.2 mRNA downstream 247320 87108000 ~ 87144341 (-) False alg6
XM_036978630.1 mRNA downstream 247320 87108000 ~ 87144341 (-) True alg6
XM_021604620.2 mRNA downstream 297767 87071831 ~ 87093894 (-) False efcab7
XM_036978629.1 mRNA downstream 323962 87055034 ~ 87067699 (-) True pgm1
XM_021604639.2 mRNA upstream 17817 87419230 ~ 87424068 (-) True angptl3
XM_021603307.2 mRNA upstream 104336 87505749 ~ 87520049 (-) False usp1
XM_021603308.2 mRNA upstream 104336 87505749 ~ 87520050 (-) True usp1
XR_005051885.1 mRNA upstream 256516 87657929 ~ 87659520 (-) True LOC110522895
XM_036978657.1 mRNA upstream 283800 87685213 ~ 88049103 (-) False LOC110523029
TU511399 other downstream 148428 87241854 ~ 87243233 (-) True G451856
TU511053 other downstream 625674 86765583 ~ 86765987 (-) True ror1
TU510765 other downstream 793917 86597352 ~ 86597744 (-) True G451286
TU510750 other downstream 841783 86548838 ~ 86549878 (-) True G451271
TU510403 other downstream 1512687 85877733 ~ 85878974 (-) True G450957
TU511933 other upstream 96953 87498366 ~ 87499136 (-) True G452255
TU512060 other upstream 372809 87774222 ~ 87805865 (-) True LOC110523029
TU512143 other upstream 458714 87860127 ~ 87866464 (-) True G452442
TU512158 other upstream 493319 87894732 ~ 87895212 (-) True G452457
TU512205 other upstream 582547 87983960 ~ 87984633 (-) True G452504

Expression Profile