RNA id: XM_036978638.1


Basic Information

Item Value
RNA id XM_036978638.1
length 7019
RNA type mRNA
GC content 0.54
exon number 49
gene id dock7
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87401770 ~ 87493654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCTATTCCCAGTCTCTTTTTTCCCAGCAGCTGAGAGTAGTGGAAAGCCTGTGAATCCAAGCACATCTGCGGCTACAGCTATGGCTGAGCGCCGCGCATTCGCCCAAAAAATCAGCAGAACGGTAGCAGCCGAGGTGAGAAAACAGATCGCTGGTCAGTATGGGGGCTCCCCACAGCTCCTCAAGAACCTCAATGTGGGTGCCGCTGCCAGCAACACCGTTCCTCTCACAGAGGCGGTGGAGCCGGTGGACTTTGAGGAGTACCTCATCACCCATCCCCCCATCATCGAGTCGGGCCCCCTGAGGGACCTTATCGATTTCCCCCCGGATGACATCGAAGTGGTATACACCCCCAGAGAGTGTCGTACCGTGGGACAGGCCGTGCCTGAGGAAGGGGACAATGACGCCCACGTCAGAGATTGTGTCAGGTCCTACACTGAGGACTGGGCCATCGTCAACAGAAAATACCATAAGCTTGGTACAGGATTTAACCCTAACACCCTGGACAGGCAGAAGGAGAGGCAGAAAGGCCTGCCCAAACAGGTGTTTGAGGCCGATGAGATGCCAGACGTTAGCACTTACCAGGACGACCAGGATGATCTGAAGCGTAGGTCCATGTCCATAGATGATACCCCGCGTGGCAGTTGGGCCTGTAGTATCTTTGACCTGAAGAACTCTGTCCCTGACGCCGTCCTGCCCCACCTGCTTGACCGGGCCCCCAACGAGGAGATAGACCGCCACAACGAGGAGCACCGCAAGTCCCACCGCCACCGTGAGCTCTTCGCCCTGCACCCCGCCCTCGATGagGAAGAACCCATAGAGCGCCACTGTGTGCCTGATGTCCCTAAGGAACATTTTGGCCAGAGGCTACTCGTCAAGTGCTTGTCCTTGAAGTTTGAGATTGAAATTGAGCCCATATTCGCCTGTTTGGCCTTATATGACGTCAAGGAAAAGAGAAAGatATCGGAAAACTTCTTCTTTGACCTGAACTCAGAGCAGACTAAAGGGATGCTGCGCCCCCACATCCAGACAGCAGCCATCTCTACTCTCGCCCGCTCCGCAATTTTCTCCATTACATACCCCTCCCAGGATGTCTTCCTCGTCATACAGCTGGAGAAGGTGTTGCAGCAGGGAGACATAGGAGAATGTGCAGAACCGTACATGGTCTTCAAAGAGTCTGATGCAGCCAAAAACAAAGAAAAGTTGGACAAGTTGCGGAGCCAGTCGGAGCAATTCTGCACACGTCTGGGTCGGTACCGGATGCCCTTCGCCTGGACAGCCATCCACCTGATGAACATCGTGAACAGCGCCGGCAGTCTGGAGAGAGACACTGAGCTGGAGATGGGACTTCCAGAGAGGAAAGGGTCGTGGTCTGAGAGGAGGAACTCGAGTATCGGCGGACGGCGCTCATTAGAGAGAACCACCAGTGGAGATGAATCATGTAGCCTGACCAGCTTCAGACCTGCAACCCTCACCGTCACCAATTTCTTCAAACAGGAGGGAGACAGACTGAGTGATGAGGACCTGTATAAGTTCCTGGCTGACATGAGGAGGCCGTCTTCAGTGCTGAGGAGACTGAGGCCAATCACAGCCCAGCTGAAGATCGACATATCCCCGGCCCCAGAGAACCCCCACTACTGCTTGACCCCTGACCTCCAGCAGGTCAAGCCCTACCCAGACAGCAGGGTTCGCCCCACCAGAGAGATACTGGAGTTCCCCCCCAGGGATGTCTACGTACCCAACACCACCTACAGaaacCTACTGTATGTGAACCCACACAGCCTGAACTTCGCCAACCGTCAAGGCTCCGCCCGGAACATCACAGTGAAAGTACAGTTTATGAACGGGGAGGACCCCAACAACGCTATGCAGGTGATTTTTGGGAAGTCCAGCTGTGGAGACTACACCAGAGAGGCATACACTGCCGTGGTGTATCATACCAGGTCCCCGGACTTCCATGATGAGGTGAAGATCAAGCTGCCGGCCTCTCTGACTGAccaccaccatgtcctgttcACCTTCTACCATGTCAGCTGCCAGCAGAAACAGAACACCCCCCTGGAAACCCCTGTGGGATACACGTGGATCCCCATGCTTCAGAATGGACGCCTGCGTACAGGAAGCTTCTGTCTGCCGGTGTCTCTTGAGAAACCTCCCCAGTCCTACTCTGTTCTCTCACCTGACGTTCCTCTCCCTGGGATGAAATGGGTGGATAACCACAGAGGGGTGTTCAACGTTGAAGTGACATCTGTTTCCACCGTCCACACGCAGGACCAGTACCTGGATAAGTTCTTTGCGTTGGTGCATGCCCTGGACGAGCACATGTTCCCTGTGCGGATTGGAGACGTGCGCATCATGGAGAATAACCTGGAGGCGGAGCTAAAGTCCAGCATCGCAGCACTAAACTCCTCCCAGCTGGAGCCCATCGTCCGATTCCTCCACCTCCTATTGGACAAgctggtggtgctggtggtgcgGCCGCCCGTCATCGCAGGACAGATAGTGAATCTGGGCCAGGCCTCGTTCGAGGTGATGGCATCCATAGTGAATCGGCTCCACAAGTACCTAGACACCAGTCAGGACATGCACGGCAGAAACGGTCTGCTCTCCTCTTATATATACTACGTCTTCAGACTGCCCAACATGGACCCCAACTTCCCCTCACCAGGTCCTGGAGGGCTGGGTGGTTCAGTCCACTATGCCACCATGGCCAGGTCCGCCCAGCGACCAGCTAGCCTAAACCTCAACCGCTCCCGTAGCCTTAGCAACAGTAACCCGGACATCTCCGGAACACCCACGTCCCCTGACGACGAGGTCCGCTCCATCATCGGCAGTAAGGGTCTAGACCGCTCCAACTCCTGGGTGCACACCATGGGGTGTAAGAGCACCCCCTGGGGATCCAGCCCTGTCTCTGATACTGACACCATGCAGGCCATGGAGCGCTGTGGCAACCGCATGTCTTCGCACACTGAGAGCACCAGTTTCTTGCAAACTTTAACAGGACGGTTACCCACCAAAAAGttGTTCCATGAGGAACTGGCACTACAGTGGGTGGTGAGCAGTGGCAGCGTCAGAGAGGGAGCTCTCCAACAGGCCTGGTTCTTCTTCGAGCTCATGGTGAAGAGCATCATCCATCACCTGTACTTCACCGACCGGCTGGAGTCGCCCAGGAAGAACCGTTTCCCCGAGCGCTTCATGGATGACATCACAGCCCTGGTCAGCACCATTGCTGGGGACATTGTCTCACGCTTTCAGAAGGACCTGGAGCTGGTGGAGCGTCTTAACACCAGCCTGGCCTTCTTCCTGAATGACCTGCTGTCTGTCATGGACCGAGGCTTCGTCTTCTCCCTCATAAAGACCTACTGGAAACAGGTCTCCACTAAGCTGTACATGCTGCAGAACCCCACTCTGGAGTCTCTGAGGCTGGACTTACTGAGGATCGTCTGCAGCCACGAGCACTATGTCACCCTTAACCTGCCCTGCAGCCTGCTCACGCCCCCCGCCTCGCCATCTCCCAGCGTGTCCTCCGCAACCTCGCAGAGCTCAGGCTTCTCCACCCATGCGCAGGACCAGAAGATAGCCAACATGTTCGAGCTGTCTGTTCCCTTCAGAGAGCAGCACTACCTGGCTGGACTGGTGCTGTCTGAGCTGGCTGTCATCCTGGACCCAGAGGCCGAAGGgaTGTTTGGCTTACATAAGAAGGTGGTCAGTGTGGTACATAACCTGCTGTCCAGCCATGACTCCGACCCCCGCTACGCTGACCCCGAGGTCAAGGCCCGCGTCGCCACGCTCTACCTGCCGCTCATCGGCATCGTCATGGAAACACTTCCCCAGCTTCACGACTTCACAGAGTCCCATAACCAGTGGGGTCGTCCCGGCGGTGCTCAGGGGGCCGCGGGTGGGGCCGGGGGGGACGAGTCTGGAGAGGACGGCAACAGCATGATCAGTCAGACCGTTGCCATGGCAATAGCAGGGACTTCTGCTCCGATATCTCGTCCCAGCAGCTTCCTGCTCAACCCACAGgccAGCCGTCAGCATGGCACCTTCTCAGCAGAGTCCAGCCGCAGCCTGTTGATCTGTCTGTTGTGGGTTCTGAAGAATGCTGATGAGTGTGTCCTACAGAAGTGGttctctgacctgtctgtctcccagCTCAATCGTCTGCTGGACATGCTCTACCTATGTGTCTCCTGCTTCGAGTACAAGGCCCATGTTGTGTTCACCATGCAGGGGAAGAAGGCCTTTGAGCGCATGAACAGCCTAACCTTCAAGAAGTCCAAGGACATGAAGGTCAAGCTGGAGGAGGCCATACTGGGGAGCATCGGGGCACGGCAGGAGATGGTCCGTCGCAGCAGGGGACAGCTGGGTACACTAGAGAGGAGTCCATCAGGCAGTGCCTTTGGCAGCCAGGAGAACCTACGCTGGAGGAAAGACATGACTCACTGGCGCCAGAACAGCGAGAGGATGGACAAGAGCCACAGATCACtcagAACCAGAGCAGAGCTGGAGCATGAAGCACTTATTGATGGTAACCTGGCAACCGAGGCAAACCTGATCATTCTGGACACTCTGGAGATCATCGTTCAGACGGTGTCTGTGACAGAGTCTAAGGAGAGTATCCTGGGTGGAGTGTTGAAGGTGCTCCTCCACAGCATGGCCTGTAACCAGAGTGCCCTCTACCTGCAGCACTGCTTTGCGACACAGAGGGCTCTCGTCTCAAAGTTCCCCGAACTGCTGTTTGAGGAGGAAACAGAGCAGTGTGCTGACCTGTGTCTGCGTCTGCTGAGGAACTGTAGCAGCAGTATCGGCACCATCCGAGCCCACGCCTCCGCTTCACTCTACCTGCTCATGAGGCAGAACTTTGAGATCGGCAACAATTTTGCACGTGTCAAGATGCAGGTGACCATGTCCCTGTCCTCCCTGGTGGGAACGTCTCAGAACTTCAACGAGGAATTCCTCCGACGTTCCCTGAAGACCATCCTGACCTACGGAGAGGAAGATCTGGAACTCCGGGAGACCACCTTCCCTGATCAGGTTCAGGACCTGGTGTTCAACCTCCACATGATCCTGTCTGATACAGTCAAGATGAAGGAGCACCAGGAGGACCCAGAGATGCTCATAGACCTCATGTACAGGATCGCTAAGGGTTACCAGACGTCTCCAGACCTGCGTCTGACGTGGCTGCAGAACATGGCGGGTAAACACTCTGAGAGGACCAATCACGCGGAGGCAGCCCAGTGTCTGGTGCACAGCGCCGCCCTGGTGGCAGAATACCTCAGCATGCTGGAGGACCGCAAGTACCTGCCGGTCGGCTGTGTCACCTTCCAGAACATCTCTTCCAACGTGCTTGAGGAGTCAGCCGTGTCTGATGATGTGGTGTCCCCTGATGAAGAGGGTATCTGCTCTGGGAAATACTTCACTGAGGCTGGCCTGGTGGGGCTGCTGGACCAGGCTGCTTCCTCCTTCTCCATGGCTGGTATGTACGAGGCGGTGAACGAGGTGTACAAGGTACTGATCCCCATTCACGAGGCCAGCCGGGACGCCAAGAAGCTGGCCACCATACATGGTAAACTACAGGAAGCCTTTGGCAAAATCGTACACCAGAGCACTGGCTGGGAGAGAATGTTTGGTACGTACTTCAGAGTGGGATTGTATGGTTCTAAATTCGGGGACTTGGACGAGCAGGAGTTTGTATACAAAGAGCCTGCCATCACCAAGCTGGCTGAGATCTCACACCGACTCGAGGGGTTTTATGGCGAGCGCTATGGAGAAGACCAGGTGGAAGTCATTAAGGACTCCAATCCTGTGGACAAGTGCAAACAGGACCCAAATAAGGCTTATGTCCAGATCACGTACGTGGAGCCGTACTTCGACACATACGAGATGAAGGACCGCATCACGTACTTCGACAAGAACTACAACCTGCGGCGGTTTGTCTACTGCACGCCGTTCACACTGGACGGGCGGGCGCATGGGGATCTGCACGATCAGTTCAAACGCAAAACCATCCTGACCACATCCCACGCCTTTCCCTACATCAAGACCCGCATCAACATCATCCACAAAGAGGAGATCATCTCTATGCCCATCGAGGTGGCCATAGAGGATATGCAGAAGAAGACCGGAGAGCTGGCCTTCGCTACCCACCAGGACCCATCGGATGCCAAGATGCTGCAGATGGTGCTGCAGGGGTCAGTGGGGACTACCGTCAACCAGGGACCTCTGGAGGTGGCCCAGGTGTTCCTGTCAGAGATCCCCAGTGATCCTAAACTCTACAGACACCACAACAAACTACGCCTCTGCTTCAAAGACTTCACCAAGAGGTGTGAAGATGCCCTGCGTAAAAATAAGAGTCTGATTGGTCCAGACCAGAAGGAGTACCAGAGGGAGTTGGAGAGGAACTACCATCGCCTGAAGGAGGCGCTACAACCACTCATCTGCAGAAAGATACCCCAGCTTTATAAACCCGTGCTGCAGGTCAACTCTCACAgagattcCTTCAGCAGAATGAGTCTTCGCAAGCTTGAACTTTGAAGATGAAGAGAATTGAAGGATCACAACCTTAATTTATTAATGTGTAAATACTGATGGTCAGTGTCTTGAGAAGTCAGTGTTCCCCATAGAAGGAAAGCTAAAGTGTTACTACGAAGTCGGTACATCATTCCAGTGTCTTATTCGTTTACAGGCAGCCTGTTACGCAATCAGTGGGTTTAACAAAGTGGAACTTACTATGTACGATGTGTCAAATCTGTATACATATTTCATGTGTGCACCTTTTTTTCATTACATTTTATGACTTGAAAGTTTATTATTTAAtccaaaatgagaaaaaaaacaagcaaaaTATGTGCTACCACTCTTTATCATAATGCTTTATTTTTAGTTAAGATACTTTTGTTTAAAGTTAAGGAAATGTTTTAAACATCATGAATTgttttatgtatgtatgtttatgttgtatgtatgtttgtttttgtttactttaAGTATTTTACTAAATCAATATTTTAATGTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511505 lncRNA upstream 17580 87383713 ~ 87384191 (+) True G451937
TU511485 lncRNA upstream 56611 87344824 ~ 87345160 (+) True G451917
TU511484 lncRNA upstream 57351 87344206 ~ 87344420 (+) True G451916
TU511474 lncRNA upstream 63861 87337700 ~ 87337910 (+) True G451906
TU511465 lncRNA upstream 83534 87318010 ~ 87318237 (+) True G451897
TU511598 lncRNA downstream 3529 87497183 ~ 87499128 (+) False G451977
TU511599 lncRNA downstream 3529 87497183 ~ 87499128 (+) False G451977
TU511601 lncRNA downstream 3529 87497183 ~ 87499128 (+) True G451977
TU511622 lncRNA downstream 99045 87592699 ~ 87665249 (+) False kank4
TU511624 lncRNA downstream 99045 87592699 ~ 87666397 (+) False kank4
XR_002473639.2 mRNA upstream 293935 87094040 ~ 87107836 (+) False si:dkey-148h10.5
XM_036978652.1 mRNA downstream 28051 87521705 ~ 87666404 (+) False kank4
XM_036978653.1 mRNA downstream 28051 87521705 ~ 87666404 (+) False kank4
XM_036978654.1 mRNA downstream 28054 87521708 ~ 87666404 (+) False kank4
XM_021604647.2 mRNA downstream 678105 88171759 ~ 88177340 (+) True dmrt2b
XM_021604651.2 mRNA downstream 767782 88261436 ~ 88263514 (+) True fam183a
TU510894 other upstream 557500 86843876 ~ 86844271 (+) True G451408
TU509774 other upstream 805256 86596147 ~ 86596515 (+) True G450394
TU509699 other upstream 845724 86554473 ~ 86556047 (+) False G450331
TU509700 other upstream 845724 86554928 ~ 86556047 (+) False G450331
TU509709 other upstream 932834 86468538 ~ 86468937 (+) True G450333
TU511628 other downstream 26570 87520224 ~ 87630763 (+) False kank4
TU511702 other downstream 124478 87618132 ~ 87620643 (+) True G452064
TU511745 other downstream 214685 87708339 ~ 87708652 (+) True G452097
TU511749 other downstream 228592 87722246 ~ 87722792 (+) True G452101
TU511759 other downstream 276950 87770604 ~ 87772094 (+) True G452111

Expression Profile