RNA id: TU511521



Basic Information


Item Value
RNA id TU511521
length 290
lncRNA type sense_over
GC content 0.48
exon number 2
gene id dock7
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87401770 ~ 87493654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgttcagatgggttagggcagtgtgaagtgtggttgagattgcatcgtctgtggacctatttgggcggtaagcaaattggagtgggtctagggtgtcaggtagggtggaggtgatatggtccttgactagtctctcaaagcacttcatgatgacggaagtgagtgctacggggcggtagtcgtttagctcagttaccttagctttcttgggaacaggaacaatgttggccctcttgaagcatgtgggaacagcagactggtatagggattgattgaatatgtctgtaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU511577 lncRNA upstream 35708 87420804 ~ 87421973 (+) False G451959
TU511505 lncRNA upstream 73490 87383713 ~ 87384191 (+) True G451937
TU511485 lncRNA upstream 112521 87344824 ~ 87345160 (+) True G451917
TU511484 lncRNA upstream 113261 87344206 ~ 87344420 (+) True G451916
TU511474 lncRNA upstream 119771 87337700 ~ 87337910 (+) True G451906
TU511598 lncRNA downstream 32319 87497183 ~ 87499128 (+) False G451977
TU511599 lncRNA downstream 32319 87497183 ~ 87499128 (+) False G451977
TU511601 lncRNA downstream 32319 87497183 ~ 87499128 (+) True G451977
TU511622 lncRNA downstream 127835 87592699 ~ 87665249 (+) False kank4
TU511624 lncRNA downstream 127835 87592699 ~ 87666397 (+) False kank4
XR_002473639.2 mRNA upstream 349845 87094040 ~ 87107836 (+) False si:dkey-148h10.5
XM_036978652.1 mRNA downstream 56841 87521705 ~ 87666404 (+) False kank4
XM_036978653.1 mRNA downstream 56841 87521705 ~ 87666404 (+) False kank4
XM_036978654.1 mRNA downstream 56844 87521708 ~ 87666404 (+) False kank4
XM_021604647.2 mRNA downstream 706895 88171759 ~ 88177340 (+) True dmrt2b
XM_021604651.2 mRNA downstream 796572 88261436 ~ 88263514 (+) True fam183a
TU511578 other upstream 34845 87420804 ~ 87422836 (+) True G451959
TU511538 other upstream 45042 87401822 ~ 87412639 (+) False dock7
TU510894 other upstream 613410 86843876 ~ 86844271 (+) True G451408
TU509774 other upstream 861166 86596147 ~ 86596515 (+) True G450394
TU509699 other upstream 901634 86554473 ~ 86556047 (+) False G450331
TU511628 other downstream 55360 87520224 ~ 87630763 (+) False kank4
TU511702 other downstream 153268 87618132 ~ 87620643 (+) True G452064
TU511745 other downstream 243475 87708339 ~ 87708652 (+) True G452097
TU511749 other downstream 257382 87722246 ~ 87722792 (+) True G452101
TU511759 other downstream 305740 87770604 ~ 87772094 (+) True G452111

Expression Profile