RNA id: XM_021603308.2


Basic Information

Item Value
RNA id XM_021603308.2
length 4958
RNA type mRNA
GC content 0.47
exon number 9
gene id usp1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87505749 ~ 87520050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGCTAGAGAagatccagcttttgtcaaattaacgtcaGATTAGATTTTTCGTAGCGGGTTAGGATAACTAATGTAGCAGATTATAATATATTGGTTAAGATTATAAaacgggttagggttagctaaaatgcacacacaaaaaaacaactttTGACAAAAACTGGATCCCTTCTAGTCATGGCCGTGTTTCTCCCACGGTGACATGTCTCAAAAAATGCCTGTTGCATTACTTTGTTTTCACTTTCTAAAATTTTAATCAGCGATTGtagtttttgtttttaattaatAATGAGTTTTTCTaacattattgtattttttttattattataattgaTGTTAATGGTGTCGTGCAGGCGCGGGTGCAGCTGGGGTCTTTGCGTTTGGAAAAAGCGCCAAGTCCTGCTCACATCGCGTGGTTTATCAAATGGTTATACAAATATACTATGTAATTGAATAAGCTATCGCAGAAATCGAAAATAAAGTACGACATGACTCAGTAAGTGTGGAGCGCTGTTGTGTTGGCAGTATCATCAAATACTAAATACGATCGAAGATGCCCGGCCTACAGGGCGATGCCGCGGCTCTCGGGAGCCCCATCAAAAAGAGCAAACTCTCTCTGAAGTTTTTCCAGAAGAAGGAGACGAAGCGAGCCTTGGACTTCTCCGAACCCCAAGTAGAGGAACCAAAACCAGTCAGAGTTGAACCTGAGGAGCCTTCAAGCTGTGACCAGGTTGTGCCAATCCCACTGCCTGGACCTGCCCCGTGTCCAACCTCTCCCATCTGCCCAAGTGACAAGGGAGAGGAGACGCTGGTGCCCTTTGTTGGGCTCAATAACCTGGGAAACACCTGTTACCTGAACAGCATTCTACAGGTATTGTACTACTGTCCTGGGCTCAGAGATGGCATCAAGAACCTCTACAGTTTGTCCAAAACAAGGGACAAGCAAAAGGAAGAGGCTGCTAATAGTGATGAGACGGAGGGTCCAGAGGAGGCGGTGCCAGTACACATGGAACTGCTGGGTAGTTTCCACAGTCTGATCACCTCGGTAGAGCAGCTCCAGTCCAGCTATCTGCACAACCCTGACAAGTACAGTGATGGGGAGCTGGCCACACCTCCACGCAAACTACTAAACACACTCAGACAGCTGAACCCCATGTACGAAGGCTACCTACAGCACGATGCCCAGGAGGTGCTGCAGTGCATCCTGGGATACATCCAGGAGGCCTCTGAGACCATCAGGAAGGAACAGGAGGACCAGGATGATGTCATAGAGGTCAAGCCAGGCAGTTCTGCCCCTGTGGGCACCAACGGGGCTTCAACAGAAGAGCAGGCCCAAACTTCAGAAACATcacttgatgatgatgatggccaAACCAGTGGTAAGAGGAAGAGCGATACAGAGGCAGGCAATGCCAAGAAGAAGCCAAAATCTGTCAAGTCCAAGAATGCTGCTGCTGTTGCAGCCAACGATGGCAAACCCCTCACTCGCTCCAAGAGGAAGTCTACTGGTGGCATCACTGTAGCGCCAAAAGACAAAGctgaagaagagggggagaaaaagcaggaagaagagggagaggaggaaagtaatgtggaggggaaaggagaggtggaggtggccCCTAAAGAGGTGGAGGTTAAGGGGAAGAAGAGGCCCAAGTTGTGCTGGCCGAGGCACTCGGGGAAGCAGCCCAGTATCTTCTCTAAGTTCATGAGCATGGGACGGATCAGCTGCCACACAGGAGGGAAGACCGAGACAGCCAAACCTGACCAGGAGGAGACGGGTCCTAGCCAACCTCAGGAGAATGATGGTGGGGAACATGGGAGGAACCCTCAGGAGAAGGTAACAGAAGTGCCCGAGGAGGAGAAAGCTAAAAGTGAAGAGTGCCTGGGTGTGGACATGATGGAGCATCTGTTCCAGGGCTGTCTGGTGTTGAGGACGCGTTGTCTGGAGTGTGAGTGTTACACCGAGAGGAGAGAAGACTTCCAGGACATCAGTGTCCCAGTGCAGGAGGAAGAACCCTGCAGCCCAGACAGCAGCTCAGAGGtCTCCCCTGATCCCAAACCGGTGCTGAAGACTCTGAAGTGGGCCATCTCCCAGTTTGCCTCAGTGGAGAGGATTGTAGGGGAGGACAAGTACTTCTGTGAGACCTGCCACCACTACACAGAGGCTGAGAGGAGTCTCCTGTTTGATAAAACCCCAGAGGTCGTCACTATCCATCTCAAGTGCTTCTCAGCCAACGGGTTAGAGATGGACCCGTACGGCGGCCTCTCAAAGGTGAACACCCCTCTACAGACCCCACTGAAGCTCTCTCTGGAGGAGTGGTGCACGCACCCCTCAGCCACTGCCACCGGAGGGCAGCACTACCAGCTGTTTGCTGTGGTCATGCACAGCGGGGTCACCATCTCCAGCGGACACTACACCACTTACATCAGGATGATGGACCTTAAGGACACCAAGGTCCGCCTGCCCGAGGGGGACGAGAAGCAGGGAGAAGAGGACTGTGGCGGGAAAGTGCCGGGTCCGGAACCCAAAGAAGAGGTGCTGGATTATGACGATGGGGAAGTGTCCTTCAGTCTCCGTGGTAAAGCAGGACAGAGTGGTTCTGTGAATGCTAACTCCACCAACACCAGTAAGATGGGCTCCAAGAAGGCTTCAGACGGGGTAGGACTTCTGGGGGGTCAGAGGAGCCTGTCCAGCTATGACCTAGGGGGCAACAAGCAGACAACCAACCCAGACAAAGCTGCCTGTACTGGGGTAGAGAGCAACACCACCAGATCATCCAGACGGACCTCCAGTGCCCCGGGACACAGCGGTAGTGGAGGGGTTAAGAAGGAGCCTGGGGAGGGTGAGGAGGCCTCTGTGGCTGGGTGTGAGGGGTTTGGGGTGGCTACGGAGCAGGCCCTAAGCAGCCTGCTGCAGTATGAAGGGAAGTGGATGCTGTTTGATGACTCTGAGGTGCGTCTCTTTGAGGAGGAGGACTTTCTGAGAGCCTGTTCTCCAGAAACCTGCTCCACATCTACCCCATATCTTCTGTTCTATAGGAGGGTCTGAAACTTCTCTGTTTGGGTGAATGAAGTATCTTCTCAGATGTCACAGGGAAGTGTCGAGAGCATTGGAAAACATCTCCTGAGGTTTTGAGAACGAGTCAACTTGAGATTCAGCCTTGTTGGCTTTCTGGGTTTGATACTCCTGTCAGTGATGTTTATAACCTGTATATGTCCTTTTTAAAGTGTTTTAATATTCAGTTTatcctcttttttttttgtgtgctggGAATATAACATTAGCCGTCTACAAAAATGCACCTTCGCACTGACATGGAGCAACCTGTCCTTTGATTTTCCTGCCCTCGTGTTGGAAGTGGTCTGAATGGAAAGGACAATGTTTCTCCCTGACACAATTTTCttttgtttcagattattttttttataaagagCACATTTTTATTCTTGTACATCTTTATCCTGTTCTGGCTTCATGCCTTCTGTCTGTTGATTAATGTTCATACTGTTGGTCTGTCAGAAATAAGAGGACTAGTTTTGGCCATAATGTTTCATTTCAGTTAGATTCAGAAACTGGCCGTCTGGTTCTTGGTGGAAGAACTTTTGCACGTGAAAACTAAATTACTTCTCTTGGTTGATATCATTTTGTACAAGGTTTTATAAGTGAATTAAAGCAGTGATGAAATACCTAGCCAATAAGATAGACAATCACTTTACAAAATGCTAGTACAACATTGCATAGCTGTTAGTCTCAGATTTGATATGTATAGAGGGGGAAGTGGACTGTTGTTTTGGCTTCAGGGATTGTATACCCcatggctctattcaatccgtattgcAGAAGTTCAGCTTTAAATTTAACGCCAATGTTCCTGCATTCACGGTAGACGCTGCGGATATCTGCTCAATGGGGAAATGACCTTTAAATGTATATCGTGGAATCTAATGTTTCAGctttacagattgaatagagcccctagTCTTGGCTTTTTCCTGGGTTGGTTTTCTCCTGAAGTTGTTTCAGctttacagattgaatagagcccctagTCTTGGCTTTTTCCTGGGTTGGTTTTCTCCTGAAGTTGTTTCAGctttacagattgaatagagcccctagTCTTGGCTTTTTCCTGGGTTGGTTTTCTCCTGAAGTTGTGCAGTTCTGTTCAATGGCAGTACCTCATTCCAGTGAAAAAGGTCTGTGGCCATACTGTCTGACTTACTGGCCCTATGAAAGATCATACCTAGGATGATAAAGTACTACACAAGCAATAAAGTTTGAACTTTCATGTAAAACGGACTTTCTATTCATCCTTTCCCTGCTGTGAAGTGTTATAGATTTAAAATAAATGGTTTGGCTTTGAAACCAGGACAGTAGAGTTACTTTTTAATGTGAATAATTCCCACTCTCCTGTACATGTAATAAAGCACTGCATTTCCAAATGTTATTTAACTAATATTTACCAATCTACAAGGTGATTGTCAAATGTACACCATGGCTAGTTTAACAGACCACAATGGTTTATTTATACATTTCATGTATTACTGGTCTGTTTACTTGGcatctttttttttgggggggggggggtgtattaatttcaaatatattttgtCTAATACGTTTCTCCAGGCCTCACACTATTCATCGCTGTCGATAATTTGGTTCTAACTTTTAATAGTAACTTTATCCACTGGCGAattgggagagagtgaggtgattGCCATCTAAGTAGGAGCCAACTTTTTTTGCTGAAATGCTGCCTGCCAACTAATCAAGGCATTTAACTGCAGGGCTACTCCCACGTCATTTGACGACAAAAAATGTTGACTTGTCTGTAAACTTGATCTCAGTCTTGCCATTTTCCGTTCTTGGCTTTCGGAAGCGTCACATGTTTCAGTTCTACGGGAGTCCTGTGAAAACATGTACAATAAATACAATCAACATAA

Function

GO: NA

KEGG:

id description
K11832 USP1; ubiquitin carboxyl-terminal hydrolase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511926 lncRNA downstream 11789 87493136 ~ 87493960 (-) True G452248
TU511954 lncRNA downstream 38154 87466904 ~ 87467595 (-) True G452274
TU511508 lncRNA downstream 117210 87388269 ~ 87388539 (-) True G451940
TU511504 lncRNA downstream 122266 87383254 ~ 87383483 (-) True G451936
TU511503 lncRNA downstream 122651 87382886 ~ 87383098 (-) True G451935
TU512017 lncRNA upstream 64141 87584191 ~ 87666309 (-) False G452330
TU512016 lncRNA upstream 75479 87595529 ~ 87666309 (-) True G452330
TU512035 lncRNA upstream 107203 87627253 ~ 87690633 (-) True G452348
TU512067 lncRNA upstream 172033 87692083 ~ 87692343 (-) True G452370
TU512072 lncRNA upstream 186227 87706277 ~ 87706486 (-) True G452375
XM_021604639.2 mRNA downstream 81681 87419230 ~ 87424068 (-) True angptl3
XM_021604628.2 mRNA downstream 104336 87391661 ~ 87401413 (-) True atg4c
XM_021604627.2 mRNA downstream 351930 87151825 ~ 87153819 (-) True foxd3
XM_021604621.2 mRNA downstream 361408 87108000 ~ 87144341 (-) False alg6
XR_005051885.1 mRNA upstream 137879 87657929 ~ 87659520 (-) True LOC110522895
XM_036978657.1 mRNA upstream 165163 87685213 ~ 88049103 (-) False LOC110523029
XM_036978658.1 mRNA upstream 165163 87685213 ~ 88049103 (-) False LOC110523029
XM_036978655.1 mRNA upstream 165896 87685946 ~ 88049103 (-) False LOC110523029
XM_036978656.1 mRNA upstream 165896 87685946 ~ 88049103 (-) False LOC110523029
TU511933 other downstream 6613 87498366 ~ 87499136 (-) True G452255
TU511399 other downstream 262516 87241854 ~ 87243233 (-) True G451856
TU511053 other downstream 739762 86765583 ~ 86765987 (-) True ror1
TU510765 other downstream 908005 86597352 ~ 86597744 (-) True G451286
TU510750 other downstream 955871 86548838 ~ 86549878 (-) True G451271
TU512060 other upstream 254172 87774222 ~ 87805865 (-) True LOC110523029
TU512143 other upstream 340077 87860127 ~ 87866464 (-) True G452442
TU512158 other upstream 374682 87894732 ~ 87895212 (-) True G452457
TU512205 other upstream 463910 87983960 ~ 87984633 (-) True G452504
TU512218 other upstream 485869 88005919 ~ 88006587 (-) True G452517

Expression Profile