RNA id: XM_036978653.1


Basic Information

Item Value
RNA id XM_036978653.1
length 9135
RNA type mRNA
GC content 0.50
exon number 11
gene id kank4
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87520224 ~ 87666404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGTTATTTTGCTTTTTAAATCTCCCTTGTTTTGCTATTTAAATCTCCCTTGTTGTTTTGCTATTTAAATCTCCCTTGTTGTTTTGCTATTTAAATCTCCCTTGTTGTTTTGCTATTTAAATCTCCCTTGTTGTTTTGCTTTTTCATCAGTGGGTTTATTTTCCTCTTAAAGTCTTAAAGCAGCCATGCCAAATTGTCTCTCTTCAGTCCAGCTGCCTgcccacacagtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgatctgaccCCCAGCACTCTCATTGGACCAGTGCTGAGGAAAGTGGGTGTGTCCCCACCAGCTAGTCCGGCCCCCTCAGCACAGCAGTGCTGGTGTTGTAAAGTACTTTACCGTCCCGTATGTTCAGTCTTCTACACTCAACTCAATTGTTCCTGTTCCTCTGCTCCAGATGCTGAGTGTGAGCAAGAGCtagacatagacacagacacagacacacactcacacacacacaggacactgacAGAGGACTGAGGCAGAAAACTGGACTTCCATCAACACCTCTGAAGAAGACTAAGAAAATAAGAGCCTTGCTTAGAGGTTGCCCACTCTCTGACAGCAGAGAAGTCCATGACCCTGAACTAACACAGCGATGGACAGGAAAAGTGCCAATGGCTACCCTAAGGccggaggagagagtggaggtggGGGTCAGAAGAAGCAGCTGCCCTACTCCGTAGAGACCCCCTACGGCTTCCACCTGGACCTCGACTTCCTCAAATATGTGGACGACATCGAGAAAGGCAACACCATCAAGCGGGTCCACATCCAGCGCAAGGCCAGGGGTCCTCCTAAGTTCAGCACCCTGCCCAGGAACTTCAGCCTGCCTGGGCATGGGGCACGATCGGCCCCCAAGGACACCTGGTCTTCCACCTCTACTCTGGGACCCAAGCCCCGAGGCAGAGTCACAGAGGTCCAGCAGTTCTTGGATTTTAGAGCCAGTGATGGAGGCAGTGGTATGGCGGGGGGGCAGAGCCAGAGCAGCAGGGCGCAGGGGAGGGGCTTATCCCCGGCCAGGCCCAGGGAGGAGGCAGGGGCTGGTGTGTCAGCCGAGAAGCCCCTGGGGAGGCCCAACCTCCTCCGTACATCCAGCATGCCCATTACCATCCCTCACAGGAAGGCCTCCGAGTCCGGGGACGAGAGAACCGAGAACGGCTCATCTGAGAACGTATTCCGCGCTGTGCCCCAGGACAGGTCGGGGCTGCACCAGCAGATCACCGCGGCCCTGAAGAGGGTCAGAGAGCTGGAGGATATGGTGAGGACCATCCCAGAGCTCAAGTCCCAGATCTGCTcactgagggaggagagagagcatctGATCCTCAGGCTGCAGGCCCAAACCAAGCCCCAGGCTCCACCCCCCCCACAACGTGCCTCGCCCTCTCCGGCTCAGATCATTGATCCTCAGCCTCCGGGGTCTGGAGCAGTagttgagacagagacagaaacacaacaGGAATCCTTAAGAAGTACTGCACAAGAAGCAGAAGCAGATAGGCTTTTAGCAGCACAGGCATCAGAGGGACCAGACCGACAAAGAGAGGCATTAGTGAATCCATTAGAGAAAACAGCAGAGCTATCAGAGGACGCTACAGTACAGAAAgcaccagaaccttcagagagagGAGTGATTGTCCAAGTCATAGAGGGAGTCAGTGGTGAGGGGGATCTCCTCAGCATCGAACAGCTCCAGGCTAAGCTAGTAACACTAGAGGCTAAGTTAAGTCAGGCTAGTGAAGAGCTGGAGGAAACCAACAGTCTCCTCAGACAACAGGTAGAGGACAACAGGATGAAGCAGGAGAGGATACTTCAGctaagcgagggagggagagagggaaaggaggaggtgTGTGGGGAGAGACATACAAGTAGGAGGACCAGTGTGGACCagcagacagagaccgagagagtggTCATTATAAACCAGGGGACAGAGTCAGAGAGGGCTGATATGGTGGAGCAGGAGACTGATACAGAGAGGATAGTGATATGTTTAATCAGAGAGAGAGCTAACAGTGTGGACCAggggacagagacggagagagtggAAGCGGTGAACCAGGTGGCCGAGACAGAGATGATTATTGCATGCCCAGTCAGACCAAGGGGCAACAGTGTGGatcaggggacagagacagagagagtgaacacTGTAAAccaggtgacagagacagagaaagtggaCACTGTAAAccaggtgacagagacagagaaagtggaCACTGTAAACCAGGTGACAGAGGCACCCCCTGGAGACAGATTAGACcaggggacagagacacagacagtagTCAGTGTGGACCAGATGACAGACACAGCACCTGTACGTCCAGTGAGACCAGCAAGACACAGGGCTAACAGTGTGGACCAATGTAGAGAGACACAAATACAGGCAGGAGTCAGTGTAGACCATGGGAAAGAGACAGTGGATACTATGAACCagctgacagagacacagacagcacCTGTACGTCCAGTGAGACCAGCAAGACACAGGGCTAACAGCATGGACCAGgggaccgagacagagagagtgagtacagtggaccaggtgacagagacagaggcagcacAGAGTGCAGACCagcaaacagagacagagagagacagaggtgagaCTAGCAATACCCCACATAGAGCTATAGAGATAGAAAGTGCAGCTATAGTAAGTGCAGCAATAGAAAGTGCGGTCACAGAAATTTCTGGAGCAGAAATTGAGGTCGCAGAAAGTGCTGTCAAAAATGGGGATATCACTGAGAGTGCTGTAACTGAAGAAGGTTTTGTGATTATAGAATGTGTGGACACAGAAAGTATGGTCACAGAGAATGTGGTCACAGAAAATGTTGGCACAGAAAGAATGGTAACAAAGAGACAAGAAGTGGTAGTAGAGAATGCAGTTGAACAAATTACAATGACTGAAAGTGTGCTTAAACAGAGTATGACCACAGAGGGTATGGTCATTGAGAGTGTGGTCCCAGAAGAGAGTGTGGTCACAGAAGACAATGTGGTCACAGAAGACAATGTGGTCCCAGAAGACAATGTGGTCACAGAAGACAATGTGGTCACAGAAGACAATGTGGTCACAGAAGACAATGTGGTCACAGAAGAGAGTGTGGTCACAGAAGACAATGCGGTCACAGAGGAGAGTGTGGTCACAGAAGACAATGTGGTCACAGAAGAGAGTGTGGTCACAGAAGACAATGCGGTCACAGAAGAGAGTGTGGTCCCAGAAGACAATGCGGTCACAGAAGAGAGTGTGGTCCCAGAAGAGAGTGTGGTCACAGAAGACAATGCAGTCACAGAAGAGAGTGTGGTCACAGAAGTctctttcccctgtctctgtcccctggtcCACACTGTTAGTGTGGTGAAAGAAACTCCCGTAGTCCCAGAGAGTCCAGTAGCAGCACCCACCCCCTCTTCCAGCCAGACCCAGCCTCAACCGGGTCAGAAGGAGTCTGTGCAGCCCCAGGCCCAGCCTCAGACCCAGGACCCTCGTCGGGGCTCCAACCCAGCATTAGGCCAGGTAGTAACACGCCTCACAGGGCTGATTAACGAGCAGTGGGCCCAGCTGGGTAGCAGCCAAGAGAAGCCGGACAAGCAGGAGACCTCCAGCACCAGCACCCAGAAGCTTGCAGCCGGGCAGGGGAAGCCTTCAACGGGCAAATCAGCAGGGAAGTCAGGGCCGTCTAAGATGAGCTCCATCCAGAGCCAGCTGGTCAGCTCCCTCAGTGCCCTGTCTGCATTCTACTCCCCTGGACAGAAGGCTGCTGCCAACAAACAACAAGgtcTGAAATCCATCATGAAGAAGAACGGTGCTGCTGACAAGCAGGGGAACAGAGGAGGAGCCAAGAAGAACCTCAAGTTTGTGGGAGTCAACGGAGGcttggtgaatttctctctctcaacaaTGGAGGAGCAGAGCAGTTGTGGACCTGGGTCTGCTCAGTGCTGGGGGGCTGACTCTCCTCTTGGGGCTGCTCGTATGCAGGACAGTTTGAGGATGAGGTATGAGACCACCTCCAGTGAGGAGGAGTCGAGcggggaggaaaaggaggaggccGAAGAGGTGGACAGCTCTGAGCCTGAGGAGATGCAGGAGGatcaggggaaggaggaggagcaggaggagggagcTGGAGAATCCCAGGGCCAGGGAGAGGACACTGCCACAGGAGAGATGGCCCAGGGAGCAGGCCCTCAGGCTGGGGAGACAGAGGGCCAGGGAAACCCTCAAGACCCAGAGTCCAGCCAGGCACTCCTGGAGGAGCAGCCAGAAGCAGGGGAGACGATAGATAAGGACTTCATGGAGGCGTGTCACTACATTAAGGATCGTATGGCAGAGGTGGCAACCCCTGATAAAGAAATGaGACACATCCTGACCGTGTTGTACCAGGAGTGGTTCCGTGTGTCCAGTCAGAAGGACTCGCTGGCCGACACTGTCACCCTCTACCTGAGAGAGGTGGGCATCGCCACGCCAACCCTCCTGCGTTACATCGTAAACCTGGCCGATGGTAACGGCAACACAGCGCTCCACTACAGCGTGTCCCACTCCAACTTCCCTGTGGTCAAACTGCTGCTGGACACTGgtctgtgtgaGGTGGACACCCAGAACAAAGCAGGCTACACAGCGGTAATGCTGGCCTCTCTGACAGCTGCTGATGGATCAGACGACATGGAGGTGGCTCTACAGCTACTGAGACAGGGAGATGTCAATGCCCGAGCCAGCCAGGCAGGGCAGACGGCCCTCATGCTGGCCGTCAGCCATGGTCGCACAGCCATGGTGCGGTTGCTGCTGAGCTGCCAGGCTGACCTCAACATTCAGGACAAAGACGGTTCGACTGCACTCATATGTGCGTGTGAGCACAGTCACGTGGAGATCGCTCGGATACTACTTGAGTCTGACCACTGTGACACCAGCCTCACAGACAAGGATGGTCAGAGTGCTCTTTCGGTTGCGGTAGCGGCCTCCCACAGTGAGCTAGTTGACCTTCTGAAGACCCATTCTGACTCCACCACCCAGgcctctaacctctcctccaccaccacctcagccaccattatcaccaccaccaccgcctcTCTCCTCTGAGTCCTCTCCAGAAGCCCCTCTCTAACCCCCACCCCAACACAGAACTCTCCCACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACCCAACCCTACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACCCagccctaccctagacccaccGTAGCCCGGACCCCATTCACCAGACCCAACCTTACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACCCAACCCTACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACCCAACCCTACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACCCAACCCTACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACCCAACCCTACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACTCAACCCTACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACCCAACCCTACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACCCAACCCTACCCTAGACCCACCGTAGCCCGGACCCCATTCGCCAGACCCAACCCTACCCTAGACCCCCATGGAGGACAGACAAAGGCTGTATTCACCACCACTCAGCTCACAGGCCTACTGGACCTGTGCTGCAAGGAACCAGAAAAACACACATTATTCACATTTCTGCCAATATTCCGTGGGCGGGACTCTGGAGTTATGTATCAACCGTTTGGCAGCCAGCCAATCAGAGAGGGACCTGTGTGTGTCAATCAAAGAACCCGTAGCCGTGGCGACAGTGGGGATCGACAGGTGATCCATGAAGAGTGCAGAAAGACAACAGAAGGATGATGGATTGATGCTTTCCAAAAAAAAATGCTCTTCAGGCAAAAATCTTCTTAAGCACATGATCTACCTTCAAAATCTGTCATATTATTATCAATAATATGGTTATTCTTCCTTTTTATTCCAATGATGACATTACTATTATTTTATATTTGGACATAAGCCATTTATTAAACCATAAAGTCAATGTTATAATAGTGTTTTATCAGACACACAAAGTATATTTATTTTGCGTTGCACTTTGTTTCACTCTGTTTGATTGCTATTCAGACTGTACATATCATATCCATGCTTGGTTTGTTTTCATCAGTATGACTTAACGATTGACTCACTGGGAGGTCTTCCAATATGAAGGGTGTATAGTAGGATGCAGCATGCAGCAATATAATAACAAAAGGCAGAATCTTCCGAAGCTACTAAACTGCAGTATGATGTAGTAACTCTCCACTTACTACTCTTCTCAACGATCTAcaactctttttctctttctcgctctcatgcactagcctggtctcagagcatttcatatgttTCTGTACGTACAGTAAATCCTAGAcattccatttagtatgatatgtaacgttttgtatggtatgtattcaaaTGTGGTTATCCATCACCCGTTTCGTATGGTATATTACGGattacaattcatattatatgttacgaattttcaTAACAAACAATATTTAATGAATTTGCTAAACGTATGATATGTAACGAATTCTAGctggtggctaatgttagctagcgcgctaaagttagctaggctagtggttagggttaattattattattttatttagtacttttacccttttttctccccaattggtggttacagtcttgtctcatctctgaaactcccctacggactcgggagaggcgtaggtcgagagccatgcgtcctccaaaactcgaccctgccaagccgcactgcttcttgacatacTGCTTGCTTTACCCGGAagacagccgcaccaatgtgtgtCAGAGAAAACACCGTCCAACCGACGACCGAAGTCAACTTGCAGGCTCCCAGTCCACCACCTTCccttaacccagacgacgcttggacaattgtgcgccgcctcatgggtcttccAGTCAAGGCCGGCTGTGACACACTACCTGGGGCTGTCGTGATGCCTTaggccgctgcgccactcggaaggccagggttagggttaagtttaaagggttaaggttagagttagaggaagggttagctaaacgggttaaggttaggtaaagggttagttaaaagggttaaggttagggttagggcaagGGTTAGAAAACATGCTAAATAGTTGCAAAATAtttgtaagtagttgaaaagttgctaattagctaaaagtTTTCAGCAATGAAATTCGCAACCTTTGGATTGCCAGACGTTTGTGTTATACACTCACCCATCCACCCCTAGATGTTTGTGTTCTACATCCACCAATCCACCCCTAGATGTTTGTGTTCtacatccacccatccacccctaGATGTTTGTGTTATACACTCACCCATCCACCCCTAGATGTTTGTGTTATACACTCACCAATCCACCCCTAGATGTTTGTGTTCtacatccacccatccacccctaGATGTTTGTGTTATACACTCACCCATCCACCCCTAGATGTTTGTGTTATACACTCACCCATCCACCCCTCGATGTTTGTGTTCTACATCCACCCATCTACCCCTAGATGTTTGTGTTCtacatccacccatccacccctaGATGTTTGTGTTATACACTCACCCATCCACCCCTAGATGTTTGCGTTCtacatccacccatccacccctaGATGTTTGCATTCTatatccacccatccacccctaGATGTTTGTGTTATACACTCACCCATCCACCCCTAGATGTTTGCGTTCtacatccacccatccacccctaGATGTTTGCATTCtacatccacccatccaccccgaccaaccaccctcctttcgtatttgccttaagtaaccatctgtcttacgTAATCATATCATACTAAATTGGGTGTCTTGGATTTACAtgcagaataatacaaaatgctctgagaccaggtggcacgcgcacacacacacacacacacacacgcacgcacgcacgcacgcacgcacacgcacacacacacacacacacacacacacacacactctcttccaCTGTAATGTATCATTCCCTTTGACTGCCTGCTTTATAGATTACAAATCAAATAATGTATGCAACCAAAATCGCTACAAAATGCACAAAGAATGTCAGTTTTACATTCCAGAATCCAGATAGCATTCAGCAGGCCTCCTAAGGAACAACATCACAGCACTTAGCACAGGAAGCAACACAGTAGAGATCTCTCCATTACTTGCCAGACTAGTAACATGTTCTCTACTGTCCTCTGCAGTCAGTGATGTTACACAGCTCTTTCTCCCATGTGGACACAAATACAGGTTTCACTGCTAGAAAAGTAGAAATGTTGTTCTTAGGGGGATTGTGCCTCTCTCTTCCACCCCAATTTTCTCTCTATATTGAACAATAGGGCACTGGTGCAGAGAAATGACATGAGAATATACTATCTATCCTATCAGAAAATGAAGAGGTCCCAAAGGAGAGGTGCTGTACTCACCAGGTGGAGTGgtgctgtctctctttctcacctgtTTATCACAAGGCAGGCCTAGGAGCTGAAGACTGACCTCAACTGGTTAAAGGTCTATATGGAAATCtaactgtacatacatatacagtattgtGGAAAATATATCTGGTATGGTCTGACATTTGCTCTTAAATATATTTAGTATTTATTAAAAATGCTATATttttacaatatacagtatatgcatggGCCAATAGTCCAATGATTGTGTTGGAATATGTGAATTTATTGGTTCTTCTGGATGGTATATATAAGCTAATTGGTCTACTTTAAAAAGCAATGTAACTTTTCATTGGTTGGGTGGTTCACGTTCGTCTCTCATTGGACAAAGCTGTGTGCTGTACTGTGTCAACAGGACTGACTGTTGTGAGACTGTACTTCTACAttacaatcagatgaaaacagcTGTACCTGCCTGTAATATTCCTACTGTCAAATGGACTTTTATGTTAACCATTTACAAATCAAAGAATTGCTTCTAAATAAAAAGGAGACTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511598 lncRNA upstream 22577 87497183 ~ 87499128 (+) False G451977
TU511599 lncRNA upstream 22577 87497183 ~ 87499128 (+) False G451977
TU511601 lncRNA upstream 22577 87497183 ~ 87499128 (+) True G451977
TU511521 lncRNA upstream 56841 87457681 ~ 87464864 (+) True dock7
TU511736 lncRNA downstream 13137 87679541 ~ 87681379 (+) True G452088
TU511737 lncRNA downstream 16662 87683066 ~ 87684138 (+) True G452089
TU511740 lncRNA downstream 25989 87692393 ~ 87692623 (+) True G452092
TU511743 lncRNA downstream 39948 87706352 ~ 87706601 (+) True G452095
TU511746 lncRNA downstream 44197 87710601 ~ 87710901 (+) True G452098
XM_036978647.1 mRNA upstream 28051 87401771 ~ 87493654 (+) False dock7
XM_021604647.2 mRNA downstream 505355 88171759 ~ 88177340 (+) True dmrt2b
XM_021604651.2 mRNA downstream 595032 88261436 ~ 88263514 (+) True fam183a
XM_036979078.1 mRNA downstream 601790 88268194 ~ 88289087 (+) True LOC110523030
XM_036978659.1 mRNA downstream 621020 88287424 ~ 88297156 (+) False LOC110524752
XR_005051886.1 mRNA downstream 675204 88341608 ~ 88342555 (+) True LOC118964681
TU511578 other upstream 98869 87420804 ~ 87422836 (+) True G451959
TU511538 other upstream 109066 87401822 ~ 87412639 (+) False dock7
TU510894 other upstream 677434 86843876 ~ 86844271 (+) True G451408
TU509774 other upstream 925190 86596147 ~ 86596515 (+) True G450394
TU509700 other upstream 965658 86554928 ~ 86556047 (+) False G450331
TU511745 other downstream 41935 87708339 ~ 87708652 (+) True G452097
TU511749 other downstream 55842 87722246 ~ 87722792 (+) True G452101
TU511759 other downstream 104200 87770604 ~ 87772094 (+) True G452111
TU511831 other downstream 235911 87902315 ~ 87903440 (+) True G452159
TU512316 other downstream 453995 88120399 ~ 88125867 (+) True G452609

Expression Profile