RNA id: TU511628



Basic Information


Item Value
RNA id TU511628
length 615
RNA type TUCP
GC content 0.53
exon number 4
gene id kank4
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87520224 ~ 87666404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGATTGGAGAGTGATAATCAGTGATATCTGATCGATGGCGATGATTCCAGGTCGAGATACACTCCAGTACAGGATTTTAGCCAGCAGGGGGAAACCTTGGACATTAATATAATATATCGTGCGCTTCCCTGAGAAATAGCCGTGCATCTCTAAATGTTGGAGCATATTTACCTTGTACCTTCCTTATGCAAATGCAATAATTAACGTTGAGAGGGAGGGAAGGCGGCAGTAGCGCGTGCAGAcggcagagaggaaaggagaaaggaagagaggaatagacgAGAAGAGCTGGCTGCACAGCAGGTTGCCCACTCTCTGACAGCAGAGAAGTCCATGACCCTGAACTAACACAGCGATGGACAGGAAAAGTGCCAATGGCTACCCTAAGGccggaggagagagtggaggtggGGGTCAGAAGAAGCAGCTGCCCTACTCCGTAGAGACCCCCTACGGCTTCCACCTGGACCTCGACTTCCTCAAATATGTGGACGACATCGAGAAAGGCAACACCATCAAGCGGGTCCACATCCAGCGCAAGGCCAGGGGTCCTCCTAAGTTCAGCACCCTGCCCAGGAACTTCAGCCTGCCTGGGCATGGGGCACGATCGGCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU511598 lncRNA upstream 21096 87497183 ~ 87499128 (+) False G451977
TU511599 lncRNA upstream 21096 87497183 ~ 87499128 (+) False G451977
TU511601 lncRNA upstream 21096 87497183 ~ 87499128 (+) True G451977
TU511521 lncRNA upstream 55360 87457681 ~ 87464864 (+) True dock7
TU511594 lncRNA upstream 59459 87460070 ~ 87460765 (+) True G451973
TU511721 lncRNA downstream 27093 87657856 ~ 87659053 (+) True G452078
TU511621 lncRNA downstream 32197 87662960 ~ 87665249 (+) False kank4
TU511623 lncRNA downstream 32197 87662960 ~ 87666397 (+) True kank4
TU511736 lncRNA downstream 48778 87679541 ~ 87681379 (+) True G452088
TU511737 lncRNA downstream 52303 87683066 ~ 87684138 (+) True G452089
XM_036978634.1 mRNA upstream 26570 87401771 ~ 87493654 (+) False dock7
XM_036978635.1 mRNA upstream 26570 87401771 ~ 87493654 (+) False dock7
XM_036978636.1 mRNA upstream 26570 87401771 ~ 87493654 (+) False dock7
XM_036978637.1 mRNA upstream 26570 87401771 ~ 87493654 (+) False dock7
XM_036978638.1 mRNA upstream 26570 87401771 ~ 87493654 (+) False dock7
XM_021604647.2 mRNA downstream 540996 88171759 ~ 88177340 (+) True dmrt2b
XM_021604651.2 mRNA downstream 630673 88261436 ~ 88263514 (+) True fam183a
XM_036979078.1 mRNA downstream 637431 88268194 ~ 88289087 (+) True LOC110523030
XM_036978659.1 mRNA downstream 656661 88287424 ~ 88297156 (+) False LOC110524752
XR_005051886.1 mRNA downstream 710845 88341608 ~ 88342555 (+) True LOC118964681
TU511578 other upstream 97388 87420804 ~ 87422836 (+) True G451959
TU511538 other upstream 107585 87401822 ~ 87412639 (+) False dock7
TU510894 other upstream 675953 86843876 ~ 86844271 (+) True G451408
TU509774 other upstream 923709 86596147 ~ 86596515 (+) True G450394
TU509699 other upstream 964177 86554473 ~ 86556047 (+) False G450331
TU511745 other downstream 77576 87708339 ~ 87708652 (+) True G452097
TU511749 other downstream 91483 87722246 ~ 87722792 (+) True G452101
TU511759 other downstream 139841 87770604 ~ 87772094 (+) True G452111
TU511831 other downstream 271552 87902315 ~ 87903440 (+) True G452159
TU512316 other downstream 489636 88120399 ~ 88125867 (+) True G452609

Expression Profile