RNA id: TU511621


Basic Information

Item Value
RNA id TU511621
length 1950
lncRNA type sense_over
GC content 0.43
exon number 3
gene id kank4
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87520224 ~ 87666404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAACCCTACCCTAGACCCCCATGGAGGACAGACAAAGGCTGTATTCACCACCACTCAGCTCACAGGCCTACTGGACCTGTGCTGCAAGGAACCAGAAAAACACACATTATTCACATTTCTGCCAATATTCCGTGGGCGGGACTCTGGAGTTATGTATCAACCGTTTGGCAGCCAGCCAATCAGAGAGGGACCTGTGTGTGTCAATCAAAGAACCCGTAGCCGTGGCGACAGTGGGGATCGACAGGTGATCCATGAAGAGTGCAGAAAGACAACAGAAGGATGATGGATTGATGCTTTCCAAAAAAAAATGCTCTTCAGGCAAAAATCTTCTTAAGCACATGATCTACCTTCAAAATCTGTCATATTATTATCAATAATATGGTTATTCTTCCTTTTTATTCCAATGATGACATTACTATTATTTTATATTTGGACATAAGCCATTTATTAAACCATAAAGTCAATGTTATAATAGTGTTTTATCAGACACACAAAGTATATTTATTTTGCGTTGCACTTTGTTTCACTCTGTTTGATTGCTATTCAGACTGTACATATCATATCCATGCTTGGTTTGTTTTCATCAGTATGACTTAACGATTGACTCACTGGGAGGTCTTCCAATATGAAGGGTGTATAGTAGGATGCAGCATGCAGCAATATAATAACAAAAGGCAGAATCTTCCGAAGCTACTAAACTGCAGTATGATGTAGTAACTCTCCACTTACTACTCTTCTCAACGATCTAcaactctttttctctttctcgctctcatgcactagcctggtctcagagcatttcatatgttTCTGTACGTACAGTAAATCCTAGAcattccatttagtatgatatgtaacgttttgtatggtatgtattcaaaTGTGGTTATCCATCACCCGTTTCGTATGGTATATTACGGattacaattcatattatatgttacgaattttcaTAACAAACAATATTTAATGAATTTGCTAAACGTATGATATGTAACGAATTCTAGctggtggctaatgttagctagcgcgctaaagttagctaggctagtggttagggttaattattattattttatttagtacttttacccttttttctccccaattggtggttacagtcttgtctcatctctgaaactcccctacggactcgggagaggcgtaggtcgagagccatgcgtcctccaaaactcgaccctgccaagccgcactgcttcttgacatacTGCTTGCTTTACCCGGAagacagccgcaccaatgtgtgtCAGAGAAAACACCGTCCAACCGACGACCGAAGTCAACTTGCAGGCTCCCAGTCCACCACCTTCccttaacccagacgacgcttggacaattgtgcgccgcctcatgggtcttccAGTCAAGGCCGGCTGTGACACACTACCTGGGGCTGTCGTGATGCCTTaggccgctgcgccactcggaaggccagggttagggttaagtttaaagggttaaggttagagttagaggaagggttagctaaacgggttaaggttaggtaaagggttagttaaaagggttaaggttagggttagggcaagGGTTAGAAAACATGCTAAATAGTTGCAAAATAtttgtaagtagttgaaaagttgctaattagctaaaagtTTTCAGCAATGAAATTTGTGTTCTACATCCACCCATCTACCCCTAGATGTTTGTGTTCtacatccacccatccacccctaGATGTTTGTGTTATACACTCACCCATCCACCCCTAGATGTTTGCGTTCTatatccacccatccacccctaGATGTTTGTGTTATACACTCACCCATCCACCCCTAGATGTTTGCGTTCtacatccacccatccacccctaGATGTTTGCATTCtacatccacccatccaccccgaccaaccaccctcctttcgtatttgccttaagtaaccatctgtcttacgTAATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511721 lncRNA upstream 3907 87657856 ~ 87659053 (+) True G452078
TU511598 lncRNA upstream 163832 87497183 ~ 87499128 (+) False G451977
TU511599 lncRNA upstream 163832 87497183 ~ 87499128 (+) False G451977
TU511601 lncRNA upstream 163832 87497183 ~ 87499128 (+) True G451977
TU511521 lncRNA upstream 198096 87457681 ~ 87464864 (+) True dock7
TU511736 lncRNA downstream 14292 87679541 ~ 87681379 (+) True G452088
TU511737 lncRNA downstream 17817 87683066 ~ 87684138 (+) True G452089
TU511740 lncRNA downstream 27144 87692393 ~ 87692623 (+) True G452092
TU511743 lncRNA downstream 41103 87706352 ~ 87706601 (+) True G452095
TU511746 lncRNA downstream 45352 87710601 ~ 87710901 (+) True G452098
XM_036978647.1 mRNA upstream 169306 87401771 ~ 87493654 (+) False dock7
XM_021604647.2 mRNA downstream 506510 88171759 ~ 88177340 (+) True dmrt2b
XM_021604651.2 mRNA downstream 596187 88261436 ~ 88263514 (+) True fam183a
XM_036979078.1 mRNA downstream 602945 88268194 ~ 88289087 (+) True LOC110523030
XM_036978659.1 mRNA downstream 622175 88287424 ~ 88297156 (+) False LOC110524752
XR_005051886.1 mRNA downstream 676359 88341608 ~ 88342555 (+) True LOC118964681
TU511628 other upstream 32197 87520224 ~ 87630763 (+) False kank4
TU511702 other upstream 42317 87618132 ~ 87620643 (+) True G452064
TU511578 other upstream 240124 87420804 ~ 87422836 (+) True G451959
TU511538 other upstream 250321 87401822 ~ 87412639 (+) False dock7
TU510894 other upstream 818689 86843876 ~ 86844271 (+) True G451408
TU511745 other downstream 43090 87708339 ~ 87708652 (+) True G452097
TU511749 other downstream 56997 87722246 ~ 87722792 (+) True G452101
TU511759 other downstream 105355 87770604 ~ 87772094 (+) True G452111
TU511831 other downstream 237066 87902315 ~ 87903440 (+) True G452159
TU512316 other downstream 455150 88120399 ~ 88125867 (+) True G452609

Expression Profile