RNA id: XM_036978656.1


Basic Information

Item Value
RNA id XM_036978656.1
length 4180
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC110523029
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87685213 ~ 88049103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTCGAGCCGATCAGCCAAGCCAAGGCAGAGCGAGTGAGCGGCGTTGCATAGCGAGGGGAAGAGGTGGTTTGCTTCGTTCAGTATTTTTTTAATGAACAAAACTACGAATCACCTCTTCTTTTAAAGATGTGGACAGAAGTCGGGAAGCTAATGCTCCTACATGTGTTACTATTGGAGCTCCACTCCACCCAAGGGACTCATACGGATACGGATTGTGAAACGGGTCAGTTTCAATGCAAGAACGGAAGGTGTGTACCTACTCTCTGGAGATGTGACGATGACGACGACTGCTCTGATAACAGCGATGAAGAAAACTGTCCAAAGAAGACGTGTGCAACCACAGACTTTGCTTGTAAGAACGGGCAGTGTGTTCCCCAGCGGTGGCGTTGTGACGGCGAGCCGGAGTGTGCTGATGGATCAGACGAGGCCGATGCTACATGCAGTCGACAGACGTGCCCACCTGAGAAGTTTGACTGTGGGGGGTCAACCAGCAAGTGTGTCTCGTTGTCATGGAGATGTGATGGTGAAAGGGACTGTGAGAACGGAGCGGATGAGAACCAATGTTCCGCAGACGCCAATGCCTGCCCCGCCAAGGAGTTCCAGTGCCATAACAGGAAATGTGTGGCTCCCATCTTTGTGTGCGACGGCGACGACGACTGCGGGGATTGGAGTGATGAGGAGAAGTGTTCCACTTCCCGCTGTGGCTCCCAGGAGTTCCGCTGTAACGACTCAGAGTGCATCCCAGCTCTGTGGAGCTGCGATGGAGACCCTGACTGCAGGGATAAGTCTGACGAGTCTATGGAGCGCTGTAGTCGCCGGACAGAGCCCCAGAAGCCCCGGTGCTCGGCGGGGGAGTTCCAGTGTGGAAGTGGAGAGTGTGTCCACCTCAACTGGAAGTGTGACGGAGAAGCCGACTGCAAGGACAAATCTGACGAGGCTGACTGCGCTCTGCTGACCTGCCGTCCAGATGAGTTCCAGTGTGGTGATGGGTCCTGTATCCATGGAACCAAGCAGTGCAACAGGGTGCACGACTGTCCTGACTTCAGTGATGAGGCCGGCTGTATCAACGtcaCTAAGTGTGATGGCCCCAGGAAGTTCATGTGCAAGAATGGACAGTGTATCAACAGCAGCAAGGTGTGTGATGCCGTCAAAGACTGCAAGGACTGGTCAGATGAACCTATGAAGGAGTGTggtgtgaATGAGTGTGCAGACAAAAATGGAGGCTGCTCTCACATCTGCAGAGACAGGAGGATTGGCTATGCGTGTGACTGTCCCTCTGGATACCAACTAATGGACAAGAAGACCTGTGAAGACATAGATGAGTGTGAAAAGCCTGACTCCTGCAGCCAGATCTGCATCAACTACAAAGGAGACTACAAGTGTGAATGTTATCAGGGCTATGAGATGGACCCCAGCACCAAGACCTGCAAGGCCGTGGGGAAGAGCCCGTACCTGATGTTTACTAACCGCCATGAGATCTGTCGTATAGACCTGGTAAAGAGGGAATACAGCCAGGTGGTTCCCACTCTGAAGAACGCTGTCGCCTTGGATGTGGATGTCACCACCAACAAGATGTACTGGTGTGACCTCTACCAGCGCAAGatctacagTGCGTACATCAACAAGGCCAGTGATTCGTCAGAGCAGGTGACTCTGATTGAGACAGCGCTGTCCTCTCCAGAGGGACTGGCTGTTGACTGGGTCCAGAACAACATCTACTGGACCGACTCCGGAGATAAGACTATCTCCGTCGCCACGGGAGATGGCAAGAAGAGGAAGGTCCTGATCGACACTGAGCTGAGCGAACCACGAGCCATCGCTGTGGACCCCCGACAAGGgtttatGTACTGGTCTGACTGGGGGACCCAGGCGAAGATCGAGAAGGCTGGCATGAACGGAGTGGATCGCCAAGTACTGGTGTCAGAGAGGATCGAATGGCCCAACGGCATCACTCTGGaCCTATCCAACAGGCGTCTGTACTGGGTGGACTCCAAGCTGCACCTGCTCTCCAGCATCGACCTGAACGGTGACAACCGCAAAGTGCTGCTCTTTTCCCAGGACCACCTGGGGCACCCCTTCGCTCTCACCGTCTTCGAGGACCGTGTGTACTGGACAGACCTGGAGGATGAGGCTATCTACAGCGCTAACAGGCTAACAGGACACGATGTGGCTACGCTAGCAGAACACCTCAATAACCCTCTAGATGTTGTGGTGTTCCACGAACTACGCCAACCCAAAGCTCCAGACAGCTGTAACATGGGCAGTCTACCTAACGGGGGCTGTGAGTACCTGTGTCTTAAAGCACCCCAGATCACTGACCACTCCCCCAAGTACACCTGTGCCTGCCCGGACGGAATGGAGCTGGGACCAGGCATGAGACGATGTGCCATAGTCAAACCCAAGACAACCACATCAGCTCCGACCACAGCTACCAGCACTACCACTGCAACtcctaccacaaccaccaccccaGCAACCACAACTACCAATCCAACCACAGGTGCTACTAAAACCACCTCCACAACTACAGAACCAACCACAGCCACACGGTCGACCGCAGTTCCTTCGACGTCCTCCCCTCCTACTCCCCCCAGGACAACAGCTTCGTGGAggacccctccctccacctctggcCCCCGCTCCACTTCCACACCCCCTCTACTGCCCAACAACATCCAGAGAGAGAACGCTAACCTCTCCCACCGCTctgggaATGACCACTACCTCCTGGGTAACAACATAACAGTGGTGGTTTTGGGTATAGTGATTCCTATAGTGATCATCGGCCTGCTCTGCACCGCCGGATACCTGATCTGGTGTAACTGGCGCCGGAAGAACACCAAGAGTATGAACTTCGACAACCCTGTCTACCGTAAGACCACGGAGGACGACGATGACGAGATTCACATCGGTCGTACTGGAGAGTCTATCGGCCACGTCTACCCCGCTGTGAGTGGCAGCGCTCACCAGCCATTCCTAGCCCTGCCCCTGGGGGGCGGGATCACAGACAGCAACTCCCATTGGTACTCGGGGGCTCCCATGCATCCCACCGGCAAATGAGATTGAGATTGGGTGGGActtggagatagagagagggttggagtgtGTGGGGGTAGGAGAGTCTCCAAGACAGGGACAGGCTtacatcctcacacacacacacacacacacacacacacacacttaagtcACAAAATCATTCCAAAAACTTCCTTGGTCAAACACAGATGTTGAGCCCTTCATCACCAGCCCACCACCACATTATCTTCTCCTTCATTCATCATATAGTCTATTGGGTCTCTATCCAGCTCCACATTCTGTGTTTTGacagtgtgtgtcactgtgttgtCGTTGTGCGTTAGGGAGGCACAGCGTCCTCGGTTGTAGCTTTACTCTCTCCTCTATGAAGAATTAGTGAAGGGAGCGTCAAACCTGCTCATTCCCCTTTGGAGTGTAAATTAGGCAAAAGGGGAACAGTAACCAGAACAGAAACAGCACCTTAGATGACGGGACAATCTTTAATCATATTCATTTATTCCTGATTATTCTTGTTTTTAATGATATATTTCTCTCCATGAGCGTTTAGTTTTTCTAGCAGTGTACTTGTAAGGTATCTTAAACAGAGATCTGCTGGTAAACATGAACAAGACAGCGGTGGGAGGGGTTAGCGCTTGGATCAGTTTGCATGGTGACACGCATTGCTGTCGTAGCGTggtagaaacagagggagagaggggtgggactCTGGCTACATGAtagtttatacacacacacacctggtatgCTACAGTGCTGTGCTGAGAGGTCATGTTGAATACCACCTCCTCTTAAGAATGGGTAGTGGGGGAGGAAACAAGCTTCCACCTGGgctttccctcttctcctctctcctctcctcgcttctcctctcctatctcctcttctcctttcctgttttctcctctcttctcccctccctcctctctcctcctctcctctctttatggTGTTTCAGTTAGATAGAGACATCAGAATGTCCTGAGGTGGATCTCTGTAAGCCCTTGCAGCTCTCCCCACATCACTGCCAAATCAGTGTGctgaggatagagggatgagaggaggagtgggatctGCATTAAGGAGAGCTTCTCTCTTTTGCCCTGTCTCTatgttgctctctttctctcacttttagttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512017 lncRNA downstream 19637 87584191 ~ 87666309 (-) False G452330
TU512016 lncRNA downstream 19637 87595529 ~ 87666309 (-) True G452330
TU511926 lncRNA downstream 191986 87493136 ~ 87493960 (-) True G452248
TU511954 lncRNA downstream 218351 87466904 ~ 87467595 (-) True G452274
TU511508 lncRNA downstream 297407 87388269 ~ 87388539 (-) True G451940
TU512256 lncRNA upstream 1592 88050695 ~ 88050959 (-) True G452551
TU512260 lncRNA upstream 7031 88056134 ~ 88056352 (-) True G452555
TU512261 lncRNA upstream 7495 88056598 ~ 88056842 (-) True G452556
TU512262 lncRNA upstream 8273 88057376 ~ 88057645 (-) True G452557
TU512282 lncRNA upstream 29787 88078890 ~ 88079128 (-) True G452577
XR_005051885.1 mRNA downstream 26426 87657929 ~ 87659520 (-) True LOC110522895
XM_021603308.2 mRNA downstream 165896 87505749 ~ 87520050 (-) True usp1
XM_021603307.2 mRNA downstream 165897 87505749 ~ 87520049 (-) False usp1
XM_021604639.2 mRNA downstream 261878 87419230 ~ 87424068 (-) True angptl3
XM_021604628.2 mRNA downstream 284533 87391661 ~ 87401413 (-) True atg4c
XM_021604649.2 mRNA upstream 213472 88262575 ~ 88268140 (-) False LOC110524751
XR_002473645.2 mRNA upstream 213472 88262575 ~ 88268140 (-) True LOC110524751
XM_036978661.1 mRNA upstream 256825 88305928 ~ 88345287 (-) False ap1m3
XM_036978660.1 mRNA upstream 256825 88305928 ~ 88348088 (-) True ap1m3
XM_036978662.1 mRNA upstream 299230 88348333 ~ 88355068 (-) True c5h1orf210
TU511933 other downstream 186810 87498366 ~ 87499136 (-) True G452255
TU511399 other downstream 442713 87241854 ~ 87243233 (-) True G451856
TU511053 other downstream 919959 86765583 ~ 86765987 (-) True ror1
TU510765 other downstream 1088202 86597352 ~ 86597744 (-) True G451286
TU510750 other downstream 1136068 86548838 ~ 86549878 (-) True G451271
TU512280 other upstream 25491 88074594 ~ 88075005 (-) True G452575
TU512830 other upstream 546348 88595451 ~ 88596395 (-) True G452999
TU513651 other upstream 1102637 89151740 ~ 89154263 (-) False mast2
TU513653 other upstream 1102637 89151740 ~ 89154263 (-) False mast2
TU513654 other upstream 1102637 89151740 ~ 89154263 (-) False mast2

Expression Profile