RNA id: XR_002473645.2


Basic Information

Item Value
RNA id XR_002473645.2
length 2753
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110524751
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88262575 ~ 88268140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAATCGAATATATGTCGGAAATTCACACGAAGAAGGTTTATTGTCCTCTGTTCCTTTTTTCACGAGTTATACATGAGAGCTGTAGACAGCTGCAAAATAAAACTTCGGATAGGAACATTTGATTACTTCGGGGCGGGTGTTTCACCGGAAGATATTTTCGGTGTACCCTTTACAGACGCCAATTCCTTCTCACGTCAACCGCTCCATGTGAGCACGGATTTTATGGTATTTGGTCCACAAAATCACTGTTTGTATCCAGTCATTCTCGTTAACAATACCATGGATATTATTGAAGATGACGAGCAGTTAGGTGAGACGTCTGAGCAGGACAGCGAATTATCTGACGGAGAGCTTCAAGATGCATTCGCAAAGGGATTGTTAAAGCCTGGGTTGAACTTTACAACACAAGAACCGAAGAAGATTGTCAACAATGTGGAGGGTTTGAAACAATGCCTCGCTGACTTTCGTAAGAACACACTACCCTGGATAGAGAGGCTGGACATGGTCAATCTCCCCGCTGATGACATCGTTGCCAAGTCCGAGGGCAGACTCGACAACAAGGCCAGCGAAGACATCAACCCAGATGACGACTTCCAGAGAGAGATGTTCTTTTACCGTCAAGCCCAAGAAGCTGTTCTGGAAGCGATGCCCCGGCTACTGAAGCTGAAGATAGCCACCAAGAGACCTGAGGACTACTTTGCAGAGATGGCCAAGTCAGACCAGCAAATGCAGAAGATCAGGAAGAAACTCATCACGAAGCAGATCATGATGGGGAAGTCGGAAAAGGCCAAGAAACTAAGAGAACAGAGGAAGTATGGCAAGAAGGTACAAGTAGAGGTTATtcagaagagacagagggagaagaaggCCATGATGTCTTCAGTGAAGAGGTATCAAAAAGGCATGACTGACAAACTGGACTTCCTGGAAGGAGATCAGAAGACTGCTAAAGGAGGCGCTCCAGCTAAAGGAGGTGCAGGGAAAGGGGCCGGTGGCCAAACACCTGATAAAAAGGCCATGAACAAGAAAGGGCCCAATGCTAAGAGGAAGTATAAAGACCAGAGGTTTGGCTTTGGCGGGAAGAAGAGTGGAACCAAGTGGAACACCAAGGACAGCCACAACGATGTGTCAGGGTTCCGAGCCAAGGTGGCTCATGGGaaaggaggaaagggagggaaaggaggcAAAGCAGGACCAGGCGGAAGGGGCCCCACCAAAGGAGGGGCTAAACGACCGGGCAAGAACGCACGCAAGAAGATGAAGGGTCGCTcctaaagaggtgtgtgtgtgttgtctttggTCTTTGCCACACTGCATCCCAACTTCTGGAAGGAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTAGAGTATCACCAAGACTACAAGATGTCCTTCCTATTGTATCACCAAGACGACAAGCTTTAGAATGTCTCCATATGAAAACCAGACAGAGCGGTACTAAAcatgccaaattcaatgttttttttaaatggtttaaaCCTCTAACATGAATATGGACATCAACGGTACAATGACATTTTATTATCGGCAGTAAAATAAATCCATGTATCTTTTAAAGGAGATCTTTATACTTTGTTGTAGGGCGTCTACGTTTGTGAAACTATTTCCACAAATGTATGTCATCTAGTTTGAGTAAATACTTGATAGATTTTTGTAAAATGCACACTTTGCAAGTCTGCTTATTGACCCCCTGATTCACTACCTTTAGGGATGTGATATTTTCTAATATTGAACAGCTGTCGTGTTTGGCCTTTTCCATGTATCAATATTATTAATGTGTAGTGGGCCAATGTATTACTTTCTATAGATCTGGGTAAATGTTTCTTCTGCAAACAGGTTGCAGGTATGACAATAGTTGGTACATTTTGGGCAAGAACCCCTTctctagcctgagtgccagtctgtgcTATTATACCAACTAATTTCATGCTGAGTTTTGCTTGACAATGACTGATGGAgatggcaagagcacaaacagggACCAGGCTACACCTGCATCTGTTTAACTTGAATGAATGATTAGTATGCTGCTTCATGTTTCTCATGTGTGGTGTTtgttataaactgggtgtttCAAGCCTTGGATGCTGATTgactgaaagccgtggtatacggtctgatataccacgggtGTGACTATTTATTTTCACtcttctaattatgttggtaaccagtttataatagcattaaggcaccttgggggtttgtggtacatggtcaatataccatggctacaggttgtatccaggcactctgcgttgcacacaagaacagcccttagctgtggtatattggccatataccacacccccttgggccttattgcttaattacagTAGGTCTGCCTGCAACCAGTTACATTGTATTTCCTTTGGACAGTAAAGTATTATTCTTCATA

Function

GO: NA

KEGG:

id description
K14823 EBP2, EBNA1BP2; rRNA-processing protein EBP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512609 lncRNA downstream 9228 88252965 ~ 88253347 (-) True G452852
TU512599 lncRNA downstream 27653 88234644 ~ 88234922 (-) True G452843
TU512598 lncRNA downstream 28246 88234117 ~ 88234329 (-) True G452842
TU512596 lncRNA downstream 30769 88231607 ~ 88231806 (-) True G452840
TU512351 lncRNA downstream 102953 88159360 ~ 88159622 (-) True G452639
TU512638 lncRNA upstream 31060 88299200 ~ 88299672 (-) True G452874
TU512639 lncRNA upstream 31836 88299976 ~ 88300300 (-) True G452875
TU512642 lncRNA upstream 33258 88301398 ~ 88303026 (-) True G452878
TU512650 lncRNA upstream 60181 88328321 ~ 88329273 (-) True G452885
TU512680 lncRNA upstream 133833 88401973 ~ 88403021 (-) True orc1
XM_036978657.1 mRNA downstream 213472 87685213 ~ 88049103 (-) False LOC110523029
XM_036978658.1 mRNA downstream 213472 87685213 ~ 88049103 (-) False LOC110523029
XM_036978655.1 mRNA downstream 213472 87685946 ~ 88049103 (-) False LOC110523029
XM_036978656.1 mRNA downstream 213472 87685946 ~ 88049103 (-) False LOC110523029
XR_005051885.1 mRNA downstream 603055 87657929 ~ 87659520 (-) True LOC110522895
XM_036978661.1 mRNA upstream 37788 88305928 ~ 88345287 (-) False ap1m3
XM_036978660.1 mRNA upstream 37788 88305928 ~ 88348088 (-) True ap1m3
XM_036978662.1 mRNA upstream 80193 88348333 ~ 88355068 (-) True c5h1orf210
XM_036978686.1 mRNA upstream 133790 88401930 ~ 88412794 (-) False orc1
XM_036978690.1 mRNA upstream 133790 88401930 ~ 88412794 (-) False orc1
TU512280 other downstream 187570 88074594 ~ 88075005 (-) True G452575
TU512218 other downstream 255988 88005919 ~ 88006587 (-) True G452517
TU512205 other downstream 277942 87983960 ~ 87984633 (-) True G452504
TU512158 other downstream 367363 87894732 ~ 87895212 (-) True G452457
TU512143 other downstream 396111 87860127 ~ 87866464 (-) True G452442
TU512830 other upstream 327311 88595451 ~ 88596395 (-) True G452999
TU513651 other upstream 883600 89151740 ~ 89154263 (-) False mast2
TU513653 other upstream 883600 89151740 ~ 89154263 (-) False mast2
TU513654 other upstream 883600 89151740 ~ 89154263 (-) False mast2
TU513655 other upstream 883600 89151740 ~ 89154263 (-) False mast2

Expression Profile