RNA id: XM_036979078.1


Basic Information

Item Value
RNA id XM_036979078.1
length 4591
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110523030
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88268194 ~ 88289087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgaatATTTTAGTGTGCAGTTTTGACGTGTATGACCTGCAGCACGAGCAGAGCCAGAAGAGGAAGGTGCTGAGCGGAGGGGACATCCATGAGTTTGTCTCAATGGCGTTCTCCACGGACTCCAAGTACTTCATCGGCCAATCAGGGGCGCCGGACTACATCCTCTTCTATTGGATGTGGGAGAAGCAGAAGATCATGGCCATGGTGAAGACCACTGTGGCCGCTAACCCAGTCAACCAGGTCAGTTTGAACCCATACGACAACACCCAGATCTGTGTGAGTGGGAATGGGGTCTTCAAGCTGTTCcagaagctggagacccataacTTGTTGTCCCACGCCTGGGTGTCTGAGGACAGGGTGATAGCCGGGACAGAGGCAGGCAGGCTGATGGTGTTTGAGTCTGGAGACCTGCGATGGGATATGTGTGTGTCCACCAAGACCACCATGTCACAGGACCCAGAGAGTGCAAAGGGAAATGATGAAGAGTCCCTTCCTCAGTTGCCTCGGGTTACAGTCATCACAGCGTACTCCAAAGGCTTTGCCTGCTTGGCCGGTCCTgggactgtgtgtctgtttgagaGAACCGACGATAAGGACAACTACAGGAAGACCAGGGAGATAAGGAACCAGGTTATGCTGGAGCTGAAGATGCGTGTGGAGGAGATGAAGATGGAGAATGAGTACCAGCTCCGTCTGAACAACGAGGACATCAAAGAGATGTCGGCTAAGTTTGTCGAGCAGATAAGAGTCGCTCAAGACCAGGAGACAGGTGAGACGAGGCTTTGTCAGGAGGAGTCTCGTATCAAGGGGAGGGAGTTTGAGGAGAGCAGGAAGcagatggaggaggatggagacagggagatcCAGGACATCAGGATCCGCTATGAGAGGTGGTTGAAGGACGAGAGGGAGACCAACATGCGCATGAAGGGAGACACCAGCATCATGAAGAAGAAGCTGGAGACATCATCTTCtcacccccacacctccctccACCATCACAAGCTCTCAAAATTTATGACGACGGTGACTGATGAcattttcctcctctccctgccacgtctaccccctgtcctcccctccctccctcacacacacacccacgcacacacactgcagttCAGCAGCCTGCAGAAGAATATAGACGACAGGAGCATGGAGAAAGAgaagatgaagacagagctacTGGCACATCAGATGTGTCTGGAGAGAGACATCCTGGCCCTGAAGAAAGAGATCCAGGAGAGGGATGACACCATCCAGGATAAGGAGAAATGCATATACGACCTGAAAAAGAAGAACCAGGAGCTGGGGAAATTTAAGTTTGCTCTGGACTACAAGATCAAAGAACTGAAGAAACAGATTGAGCCCAGAGAGAACGACATCAAGGAGATGAAAGAGCAGACCCATGAGATGGAGCAGGAGCTGGATACCTTCCACAAGAAGAACGCTCAACAGGAACTGGACATCGCTGAGCTGAAGCTCAAACTCACCACCACCGACAAGGAGATGCACAAGGGACTGCAGAAGGTGAGGGATGTGGAGGCCCTGGTACGTAGGTTCAAGACGGACCTCCATAACTGTGTGGGATTCACCCAGGAGCCTAAGAGGTTAAAGGACAGCATCACAGACCTTTACGGCCGCTATGTACAGAAGAGTGATGTGGTGGATATAGTTGGTGTGGACGCAGAAGTCCAGAGGGAGTACGCCCGGCACAGAGAGCACCTGGAGAGGAACGTGGCGTCCCTGAAGAGGAAACTGGCCAAAGACGGCGTGGTCCACCATGCAGACAACGTCAAGATCATGCAGGAGAATGCAACTCTGATCAAAGAGATCAACGACCTGAGAAAGGAGTTGCGTCTGGTGCGTTCCCAGGTCCACGACTACAAGAGTCTGATGAGAAAACAGGGCAAGAAGCAGACCAACACTTTCAAAGCGCTGCTGTCTCCCAGGGCCGACCCCAGTAACATGGTGGTCCGTCTGAACCAGGAGGGGGACCGTATCGTTCAGCTGCAGCGCCTGGAGATTCACAGGCTCAGGGAGGAGATACACCCTTATAGACCCCCCTCCACTGCCAAGCTACCCTCCCTCCAAATCAACTCATAACCCCCTTCAGACCCCCCTCCACCGCCAAGCTACCCTCCCTCCAAATCAATTTATAACCACCCCCAACCCCTCCATCCAAACCAATTTTAAGGGACTTGTAAATAAAAAGGAAAACAATTCATATTTGAGGGTTAAtataacataaatatatatatattttaaatgagaTTGGGATTTCCAAAAGTGAATGGAGGGTGTTATTGGCAGGGTCAAATCAAAGCATTGTCAGACTGGAAATTATGGATTTTTTATGACAAACTATTAATTAACAAGAACAATTGACATTGTTGTGCATGCAAAACAGTCTACTCCTAATGGCTTGTCAGTAGGCTAGCATATTTGTGTTTTATTAATGCGTGTGCGTGCGTTTTTACGGGACCTGTTTGTCAACTGGTAGGATATTCCTTCTTATTATCACCATAATAATGGGAAGTGGCAAAAACGGTAAGCCTATCATTCTCTAGACTTTAAAAAGTACTGGGAAAATCTATCTTGTCTGTCTGCTAGGTGCTATCCCAACGGCGCACAGCCCCTTCATGAGAAGTGTTTATAATTTAAGGCTGGCGCGCGGGCTTTCCCCATGGGACGCCAGCGAAAGGTCGCGCGCTGCTCTGTAGCCTACTGATGCGCTTTCCCCTCCCAACCAGCGTCGCCTCTGCGTGCGGTGACCACACCTGCAACCGGGAAAGTCCGCTAGACCTGCGCACGGTTCAGTGAGCGCGAGAGGCACACACAATCACCATCGGAGGCTCCACATCGGAGAAAGGTAGTCAGAATGATGTTGATTATTGAGACTATACTGTTTCAAACCGTCCTTTCACGCACCAAACGCGCGGCATATGGTTTGGATTTGGAAATACCTCCCGGCGCAGGAACGGAGATTTGTGGAGTCGTTCGGTTTCGAGGATGAGTAGCGACTGGGAatgtgccagcaccacgcacagGTAAACAGCATATAGACAGAATACAAATGCTAGACAGTGCATGGATCCCACACTCGATTTGATGAAGCCCAGCCACCTGAAGGTGACTAGGCTATATAACTTTCTTGACATTGTTCCACCTTTTATAGTTCGGTTCTAGGCTAGCTACTTATTTGAATTATCAAGCAAGATAATTTGAGCTGAATATAAATAGCCTAGTTTACTGTCATAACGTGTCGTGATCTGTCCTCATGACAGGTCATCATATGACGGTGTCATATAGCATTATGACAGTGTTACGTTTGGCAGCCATAGGTAATGTGTTGCTGTATGTTTGTTGTAACCATGTCACCATACTGTTGAGACAATCATCCCATAGAGCCAGAGTAGGCTACATTGGAGAGTTTAGCTCACTGCAGTTGCCACATTGAATACAAATGGCCCGTTGTATTTTCTTAAAGCCTCCAAGCATATTTTCTGATAGATATCTCCCATGAAAGGACAGTGAAGCTCGTAATTTTAGAATTTGTCAACATTTAGTGGGAAATTGGTCACTCACTTGGTCCACCCCCCCATGAAGGTATTCATTTCCAGAAGTTTGATCGTGGTTATTGGCTGTTTGACTGAAGTTTTCATTCATATTTTCGAGCCTGACTTGACCCTTGACCATAAGAGATATTAAACATTGCATAAAAAAAAAAGTCATGTATTTAAAAACCAAAACATACTCCTGACTATTCTTACATCCATCATGCAAATAACACAATTATAGTTTAATCTATTTTCAGACACATTTTTGTGAAGCTGTAAGACTGGAATAGCTGAATAAATATGAACCTTTTATTGCCAGACAGAATGGGTGTAACAGGTTTTGTGGAGGACTGAACTgtccagttttttttatttattcaggCCAACCAGGATTTCCTATACTGTAactagttcctgccaatatcaCACCTTAAGTTTTGGACCCAAGTGTTAGTGTTGGCCTCTAAACACTGTTGTAGCTATTTCCACTTGTATATATCATACAAAACAAAAGTCAGTGATGTTGTGAAAAATCCAtctagcctatacttgtgtaacagTAAATAACTATACCTAGGAGTGACCTCTCCATTGTCGTTCCCTGCTATCTCATGATCAATATACATAACATAGTCTCACCAATAAACTAAAAGGCGAGTGAGGGAACGAGGgatggagtgagtgtgtgagtaagcgcatgcatgtgtgtgccagcggaggctggtgaggggaggatggctcataataatgccaggaaaccatgtgtttgatgtatttgagagagtgcaggagagagggtgagtgtgtgtgagagagagacagaaggtgagagagcgagagtgtggaACCCAGCCCTGTGAGGATCAGGTTCTATCTGGAACCCAGCCACGTGAGGATCAGGTTCTATCTGGAACCCAGCCCCGTGAGGATCAGGTTCTATCTGGAATCCAGGCTCCTGTTTCTCACAGAGCAGGGATGTTTGAATATGTTGAAGGCCGCCTCTGAGCccatacaataaaaaaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512414 lncRNA upstream 10755 88257196 ~ 88257439 (+) True G452695
TU512413 lncRNA upstream 11423 88256445 ~ 88256771 (+) True G452694
TU512412 lncRNA upstream 12331 88255660 ~ 88255863 (+) True G452693
TU512402 lncRNA upstream 23332 88242004 ~ 88244862 (+) True G452685
TU512398 lncRNA upstream 34170 88233814 ~ 88234024 (+) True G452681
TU512431 lncRNA downstream 7641 88296728 ~ 88297444 (+) True LOC110524752
TU512450 lncRNA downstream 21640 88310727 ~ 88311538 (+) True G452723
TU512466 lncRNA downstream 45426 88334513 ~ 88366662 (+) True G452736
TU512470 lncRNA downstream 49288 88338375 ~ 88348144 (+) True G452740
TU512507 lncRNA downstream 92208 88381295 ~ 88381557 (+) True G452759
XM_021604651.2 mRNA upstream 4680 88261436 ~ 88263514 (+) True fam183a
XM_021604647.2 mRNA upstream 90854 88171759 ~ 88177340 (+) True dmrt2b
XM_036978652.1 mRNA upstream 601790 87521705 ~ 87666404 (+) False kank4
XM_036978653.1 mRNA upstream 601790 87521705 ~ 87666404 (+) False kank4
XM_036978654.1 mRNA upstream 601790 87521708 ~ 87666404 (+) False kank4
XR_005051886.1 mRNA downstream 52521 88341608 ~ 88342555 (+) True LOC118964681
XM_036978667.1 mRNA downstream 74143 88363230 ~ 88390229 (+) False tie1
XM_036978663.1 mRNA downstream 76204 88365291 ~ 88390229 (+) False tie1
XM_036978664.1 mRNA downstream 76204 88365291 ~ 88390229 (+) False tie1
XM_036978665.1 mRNA downstream 76204 88365291 ~ 88390229 (+) False tie1
TU512390 other upstream 44567 88223282 ~ 88223627 (+) True G452673
TU512316 other upstream 142327 88120399 ~ 88125867 (+) True G452609
TU511831 other upstream 364754 87902315 ~ 87903440 (+) True G452159
TU511759 other upstream 496100 87770604 ~ 87772094 (+) True G452111
TU511749 other upstream 545402 87722246 ~ 87722792 (+) True G452101
TU512417 other downstream 14220 88303307 ~ 88304449 (+) True G452697
TU513314 other downstream 1096138 89385225 ~ 89386470 (+) True G453429
TU513445 other downstream 1310877 89599964 ~ 89600696 (+) True G453547
TU514832 other downstream 2157608 90446695 ~ 90447956 (+) True G454751
TU515294 other downstream 2499431 90788518 ~ 90790211 (+) True G455168

Expression Profile