RNA id: XM_036978661.1


Basic Information

Item Value
RNA id XM_036978661.1
length 2790
RNA type mRNA
GC content 0.44
exon number 12
gene id ap1m3
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88305928 ~ 88348088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcgttccgtttgGATCTGTTTGGTTCGTAGTGAAGACATCGCTGAggtgtattcattacgccgaATCTGTTGCTAAACGTTTCAGTTGGACAAATTCCGGTGTTGATCAGTCGTAACTACATGGGAAACATGGACATGAATGAGGTCGACCACTTCATGCCCATTATGATGAGGATGGAGGAGGACGCAGACTCATCGCCCCTGGTGACACACGGCTCCGCCCACTTCCTGTGGATCAAACACAGAAACCTCTACTTGGTGGCAATGACCAAGAAGAATGCCAATGCAGCCCTGGTCTACTCCTTCCTCTACAAAATGGTGGAGGTGTTTAAGGAGTACTTtaaggagctggaggaggagagtaTCCGTGACAACTTTGTGACGGTGTATGAGCTGATGGACGAGGTCATGGACTTTGGCTTCCCTCAGACCACAGACAGCAAGATCCTGCAAGAGTACATCACCCAACAGGGTCACAAGCTGGATGTGGGCGCCCCTCGCCCCCCCGCCACCGTCACCAACGCTGTGTCCTGGAGGTCGGAGGGCATCAAGTACAGGAAGAACGAGGTGTTCATGGACGTCATCGAGTCCGTCAACTTACTGGTGAGTGCTACCGGCAGTGTCCTGCGTAGTGAGATCGTGGGCAGCATCAAGCTCAAGGTGGTCCTGTCTGGGATGCCTGAACTCAGACTGGGCCTCAACGACAAAGTGCTCTTTGAAATCACAGGACGAGAGAAAAGTAAGACGGTAGAGCTGGAGGATGTCAAGTTCCATCAATGTGTCCGTCTGTCCCGCTTCGAGAACGACCGCACCATCTCCTTCATCCCCCCTGACGGAGAGTCCGAGCTCATGTCCTACCGCCTCAACACCACGGTGAAGCCTCTGATATGGATTGAGAGTGTGATTGAGAAGTTCTCCCACAGCCGAGTGGAGATCAAGGTTAAGGCCAGGAGTCAGTTTAAGAGTCGCTCCACTGCCAACAATGTGGCCATCATGGTACCTGTGCCCAGCGATGCCGACTCGCCCAAATTCAAGACGAGCACAGGCAGCTGCAAGTATCTTCCCGAGAAGAGCGTGGTGCAGTGGAACATCAAGTCCTTCCCTGGGGGGAAAGAGTACATGATGAGGGCTCACTTTGGTCTGCCTAGTGTGGAGAGTACTGAGTTGGAGGGGAGAAGGCCCATCACTGTGAACTTTGAGATCCCCTATTTCACTGTATCTGGTATCCAGGTACGCTATCTGAAGATCATTGAGAAAAGTGGCTATGAGGCCTTACCATGGGTACGCTATATAACACAGAgtggagATTATCAACTCCGGACAAACTAAGGGCGAGCCTGCTTCTAGACAAATATATcgtcaatctctccctctctctgggagtGAGGGACAACACAGGACAAGGAAAGGGGAACTTTCACCACTGTCAATTCTCAAAGGACCATGTAGTCATCTTGCAGACATGAGGACCTTCAAGACTCAATTTCCCTTCAGAACTCGACTGTTGTCACCTTCGACCTTTGCTGTGTTACATCATCTGGAGAAACATGTTTTATCTTTTTAGAATAATGAACTTAGTGGTTTTCTTACTGGTCACATTGTAAACATTTGTATAGTTGTATTTTCTTCTTAAAGCTGGAAGAATTCAGGACATTTATGATCTCTGAAGTGTGAACGTTGAAACCTGTGTACAGCATTGATATAAAATGATATCTGGTTGGTGTGGATGCTAGCGGTTGACGTTATCTTGGGGCCAGCTGTAAGCATATAATCCCCACTGTGTCCAATGAGATGAACACCAAGATAATGAATAGGCCTGCATAATATCAGCAGCTGTGTATTACCATATTGTTGTCACAGTTCCTAGACATGTGCTTGTACTCAGCTGATGACTACGAGGAAAAGACTGAAGGAATTCTCTGTGTGCAAATTACAATTATGTAGTGTTTCTAACAGTCTTGTGATACAGACACATTTAACGCCTCGAGGAAAAGCCACGATCAAAATAAGTAAACCAATAATACAGGTGGTCCGATATCAAGAGAATGTTGTTTAGATAGGAAACAAAGTGAACATATCTATGTCAATGTGTCCCCACCAAACATACACCCAACTTTTTCAAAGCAGCTATTggttggtatggttacagtagTATGTTGTGCGTGCAATGCATCACCCCTCATATCAGTTCTGGTTCTCTATGCCAGGGAAATAGCTCTGATTCTCTCTGCCAGGGAAATAGCTCTGGTATGCTGTGTGTAGGCATACTGTATGAAATCCAGACCTGGTTTCAAATACATGTTTATTTGAGTATTTCTTATTTAAATACACATTTTCTGTATATTTGAGTATTCTCAAATGTGGTGAATCAACTTTTTTTCAaaatactattttcaaatacCTGGGATAGATGCATGGGAGTATATTTGAGACAGTCTATTTGAATATTTTGaaatactttccaagtgtatttccaaatatattccaatattcaactacttgtttttccaaataaaaaataaatacttaCTTCCAGATGTCTTTGAAAGTAATTGAAATAGCCTAAATAGTatgtgaacccaggtctgataatCTCATATTAAACCATCCATATAAAATGGCTGATTATGAGGAACAGGACAAATATGACTACACTCGTCCAGATATTCTCTCCAGTGGGGGTTTAATGATTGAAAACCACAATCTATTAATATCTTATTTATTAACCTCTATGTCAATGGGAGACAAAGGGATCTAgatagaaataaataaattacttTGTACCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512642 lncRNA downstream 2902 88301398 ~ 88303026 (-) True G452878
TU512639 lncRNA downstream 5628 88299976 ~ 88300300 (-) True G452875
TU512638 lncRNA downstream 6256 88299200 ~ 88299672 (-) True G452874
TU512609 lncRNA downstream 52581 88252965 ~ 88253347 (-) True G452852
TU512599 lncRNA downstream 71006 88234644 ~ 88234922 (-) True G452843
TU512680 lncRNA upstream 56686 88401973 ~ 88403021 (-) True orc1
TU512810 lncRNA upstream 226006 88571293 ~ 88571540 (-) True G452979
TU512813 lncRNA upstream 232258 88577545 ~ 88577825 (-) True G452982
TU512831 lncRNA upstream 252863 88598150 ~ 88598404 (-) True G453000
TU512871 lncRNA upstream 288997 88634284 ~ 88634582 (-) True G453040
XM_021604649.2 mRNA downstream 37788 88262575 ~ 88268140 (-) False LOC110524751
XR_002473645.2 mRNA downstream 37788 88262575 ~ 88268140 (-) True LOC110524751
XM_036978657.1 mRNA downstream 256825 87685213 ~ 88049103 (-) False LOC110523029
XM_036978658.1 mRNA downstream 256825 87685213 ~ 88049103 (-) False LOC110523029
XM_036978655.1 mRNA downstream 256825 87685946 ~ 88049103 (-) False LOC110523029
XM_036978662.1 mRNA upstream 3046 88348333 ~ 88355068 (-) True c5h1orf210
XM_036978686.1 mRNA upstream 56643 88401930 ~ 88412794 (-) False orc1
XM_036978690.1 mRNA upstream 56643 88401930 ~ 88412794 (-) False orc1
XM_036978691.1 mRNA upstream 56643 88401930 ~ 88412794 (-) False orc1
XM_036978670.1 mRNA upstream 56643 88401930 ~ 88412795 (-) False orc1
TU512280 other downstream 230923 88074594 ~ 88075005 (-) True G452575
TU512218 other downstream 299341 88005919 ~ 88006587 (-) True G452517
TU512205 other downstream 321295 87983960 ~ 87984633 (-) True G452504
TU512158 other downstream 410716 87894732 ~ 87895212 (-) True G452457
TU512143 other downstream 439464 87860127 ~ 87866464 (-) True G452442
TU512830 other upstream 250164 88595451 ~ 88596395 (-) True G452999
TU513651 other upstream 806453 89151740 ~ 89154263 (-) False mast2
TU513653 other upstream 806453 89151740 ~ 89154263 (-) False mast2
TU513654 other upstream 806453 89151740 ~ 89154263 (-) False mast2
TU513655 other upstream 806453 89151740 ~ 89154263 (-) False mast2

Expression Profile