RNA id: XR_005051886.1


Basic Information

Item Value
RNA id XR_005051886.1
length 439
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC118964681
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88341608 ~ 88342555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTTTGTACAAACAAGTTGTGACGCTCAACTACTGTATGAATCTTTCAACATGCCACTGGAAAGGTAGAAAAAGCTGCAATTCATTTTATGATACTTGAAAATACTGCAGGTATTTTATATTTGAACAAATCCATTTGCAAATAGCAAGTTGGATGCTTAGCAAAAACAACTTCAAACCTCCTTGTCGATCTGAGGGTCTGCACTGAAGAGGGCCCTCTGTCACACAGGATACTCCTCACACAGTGAAAGGATGTGGACaggctcttcctctttctttagCTATAAAAGGATGGTGGAATcccagacagaccgacagacagttCAAAGCTTGTTGCATTTAAAGAGGAGTCTTGACGCACATGCAAGGAAACACCAAAGCTACCTGACTGTTAAGAATGTAGAGGTAAATGTCAGTGTTCAACTAATAAAATTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512450 lncRNA upstream 30070 88310727 ~ 88311538 (+) True G452723
TU512431 lncRNA upstream 44164 88296728 ~ 88297444 (+) True LOC110524752
TU512422 lncRNA upstream 45469 88286841 ~ 88296139 (+) True G452698
TU512428 lncRNA upstream 65408 88258445 ~ 88276200 (+) True G452702
TU512414 lncRNA upstream 84169 88257196 ~ 88257439 (+) True G452695
TU512507 lncRNA downstream 38740 88381295 ~ 88381557 (+) True G452759
TU512513 lncRNA downstream 63564 88406119 ~ 88407615 (+) False G452764
TU512514 lncRNA downstream 63564 88406119 ~ 88407615 (+) False G452764
TU512515 lncRNA downstream 63564 88406119 ~ 88406855 (+) False G452764
TU512517 lncRNA downstream 63564 88406119 ~ 88407615 (+) True G452764
XM_036978659.1 mRNA upstream 44452 88287424 ~ 88297156 (+) False LOC110524752
XM_036979078.1 mRNA upstream 52521 88268194 ~ 88289087 (+) True LOC110523030
XM_021604651.2 mRNA upstream 78094 88261436 ~ 88263514 (+) True fam183a
XM_021604647.2 mRNA upstream 164268 88171759 ~ 88177340 (+) True dmrt2b
XM_036978652.1 mRNA upstream 675204 87521705 ~ 87666404 (+) False kank4
XM_036978667.1 mRNA downstream 20675 88363230 ~ 88390229 (+) False tie1
XM_036978663.1 mRNA downstream 22736 88365291 ~ 88390229 (+) False tie1
XM_036978664.1 mRNA downstream 22736 88365291 ~ 88390229 (+) False tie1
XM_036978665.1 mRNA downstream 22736 88365291 ~ 88390229 (+) False tie1
XM_036978668.1 mRNA downstream 22736 88365291 ~ 88390229 (+) False tie1
TU512417 other upstream 37159 88303307 ~ 88304449 (+) True G452697
TU512390 other upstream 117981 88223282 ~ 88223627 (+) True G452673
TU512316 other upstream 215741 88120399 ~ 88125867 (+) True G452609
TU511831 other upstream 438168 87902315 ~ 87903440 (+) True G452159
TU511759 other upstream 569514 87770604 ~ 87772094 (+) True G452111
TU513314 other downstream 1042670 89385225 ~ 89386470 (+) True G453429
TU513445 other downstream 1257409 89599964 ~ 89600696 (+) True G453547
TU514832 other downstream 2104140 90446695 ~ 90447956 (+) True G454751
TU515294 other downstream 2445963 90788518 ~ 90790211 (+) True G455168
TU515337 other downstream 2651310 90993865 ~ 90994299 (+) True G455203

Expression Profile