RNA id: XM_036978687.1


Basic Information

Item Value
RNA id XM_036978687.1
length 4184
RNA type mRNA
GC content 0.52
exon number 24
gene id orc1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88401930 ~ 88412796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCGCGCGAAAGGTAGAAAGTGCAGCCAAGTAATCCTTTGTACtagacaactttttttttttttagctagctACGTGTAAAAGATAACTAGCTATATTACTACGCTACAGCGCATCTTCGTTTATATTAAACTGCTTGAAATTTGATCAACTTGCCCGTTCGACTTTTATCAGACGAGTGGCTGTCTCTTTTCTGTCTGTAATTATGGTCCGCTACTTTACAAGACTGAGAGTGAGACGTATCTACAAATGGGGCGGAAGACCTTATATCTTCGACAGAAAATTAAAGAGTTATGGCTTTGAGTACTTGAACATGAGCGTGGAGGGTCAGGAGGCAGTCACCACTGTAACACCTGGCCAGTACATCCTCATTGAGGGAAATGATGATGAATACCCCTTTGTTGCCAAGCTTCTCAAGTTATTTGGCGATGAGTCCCACAAGCAGAAGAAGGCGCTGGTGCAGTGGTTCTTGCGCTTGTCTGAGGTGCCCCAAAATAAGAAGTTGTTGCTGGGCAGGAGCCCCCATCCCCAGGAGATCTTCTACTACCTGGGACGTGCCTGTGACGATGAGATCAACGCAGAATCCATCCTTGGCACTGTACATGTCCAGCACGTCCCTGAAGATACTCCTTTTCCAGAGCCTGGAACCAAGGACACCCTCTATGTAAAGCTGTCCTGGGACACCAAGGCCTTCAATGTTTTAGACCCTGTCCTGATGCAGGATACCTCTGCCTCAACCCCCCCCAAACCTGCTCTCCCTCTGTTTACCCCCTGTGCTTCCCCCACGGCAACCCCTGTGTCTCGGGGCCCGGTGCATCATGCCCTGCCCACCCCAGACCCCACAGTGATGAGGAGAGCAGGGTCTGTGTCTGACACTAGAGCCACCATGAGCGCCGGGAAGAGGAGTACCCTTGAGGCAGAGTCGATCCACTCTGCCTCCAAGCTCTCTGCCTCTAAAATCCTGAGCGCCAAGAGGAGGGGCAGCGCTGCAGACACACCGGGTGTACGCAAGAAACTACAGCTCAGCATCGGGGCTAGTCCAGGGAAGAAAATGACCAGAGCAGATGTCCTCTGTGAGCTCTTGGATGAAGAGATGGAGTCAGAGAAAGTTGTATCCCTCAAACTGAGCTCCTCGGTTTCACACTCCCTCCAGCATGGCTGCAGCCTCTCTCCCATGAGAAGTGGCTGCAAGACCCCTAACGGCCAGAGGAGGTTCCCCTGGAAGCTCACCTCGATCAGCCTGGACAGACTGTCTCCTACTGCCCTGGGAGAACAGGACTTTTccagTGACCTGTTGCTGGCAGTGATTCCCCTGGCCCTAGAGGATGAGGTATTTGAGGCAGGGTTACCTACAGACGCTGGCTCTGCCAACACCCCCAAGAAgagacaggccacccccaggagGAACTATGTTAGGGGACAGAAACCTACCACCCCCTCCAGGAGGAAAGAGTCTGCCATGGCCATTAGAGAGCCTGCTCTGGGGGTGCTGGCGGAGGAGGACTCTGAGGACTCTCCCATGCAGCCGATTGCCTTGACTCCTCGCTCCAAGAGGAAGTCAGCCCAGCTGGTGTCGTTACGCATCAGGAAGCAGTTgAATCTGTTGGACAATACCCAAGAGCTGATCTCCGATGGCGATGATGACTGTTTCGTTCCCTCCAAGAAGGAACTACAGAGCAGCAGCGATGAAGAGAAGACCGATAGTGAGGAAGAGACCGTGGCGAGGAAGACCAGAGGAAGAAATTGCAAGACCTCCGTCAGGACCACACACAAAACGCCCAGCAAGAAGAAGGAACTACAGAGCAGCAGCAATGAAGAGAAGACCGATAGTGAGGAAGAGACCGTGGCGAGGAAGACCAGAGGAAGAAATTGCAAGACCTCCGTCAGGACCCCACACAAAACGCCCAGCAAGAAGAAGGAACTACAGAGCAGCAGCAATGAAGAGAAGACCGATAGTGAGGAAGAGACCGATAGTGAGGAAGAGACCGTGGCGAGGAAGACCAGAGGAAGAAATTGCAAGACCTCCGTCAGGACCACACACAAAACGCCCAGCAAGAAGAAGGAACTACAGAGCAGCAGCAATGAAGAGAAGACCGATAGTGAGGAAGAGACCGTGGCGAGGAAGACCAGAGGAAGAAATTGCAAGACCTCCGTCAGGACCCCACACAAAACGCCCAGCAAGAAGGAACTACAGAGCAGCAGCAATGAAGAGAAGACCGATAGTGAGGAAGAGACCGATAGTGAGGAAGAGACCGTGGTGAAGAAGACCAGAGGAAGAAATTGCAAGACCTCCGTCAGGACCCCACACAAAACGCCCAGCAAGAAGGTCACCCCAAGTACCCCCCGTTGTGCCACTCCCTGTATTCCCAGCCGGACTGTTCCAGCCAGGCAGCCTGGGAACATCCTGGAGGAGGCCAGGGCTAGGCTGCATGTGTCGTCAGTACCAGAATCTCTTCCCTGTAGGGAGCAGGAGTTCCAGGATATCTATAATTTTGTGGAGAGCAAGGTTATGGATGGGACCGGAGGGTGTATGTACATCTCTGGGGTTCCGGGAACTGGGAAAACCGCCACCATCCACGAGGTTATCCGGTGTCTACAGCACGCCTCTGATATGGATGAAATCCCCACGTTCCGATTCATCGAGATCAACGGCATGAAAATGACCGACCCTCACCAAGCCTACGTCCAGAttctacagAAACTGACGGACCAGAAGGTGACCGCTGACCACGCCGCAGCCCTATTGGAGAAAAGGTTCAGTAACCCCGCCCCCAAGAAGGAGACCACCGTGCTACTGGTGGACGAGctggACCTTCTGTGGACCAGGAAGCAGAATGTCATGTACAACCTGTTTGATTGGCCGACAAGGCGCCACGCCCGCCTGGTGGTGCTGACCATCGCCAACACCATGGACCTTCCTGAGCGGATCATGATCAACAGGGTGGCCAGCAGACTGGGCCTGACCAGGATGTCGTTCCAGCCGTACAGCTTCAAGCAGCTGCAGCAGATCATCACGTCCAGACTGAACAAGGTCAAGGCCTTCGAGGAGGACGCTTTGCAGCTGGTCTCCAGAAAGGTGGCAGCGTTGTCAGGAGACGCCCGGCGCTGTCTGGACATCTGTCGCCGCGCCACTGAGATTTGCGAACACTCCGCCTCGCACCCGTCCTCCGCGGGATTGGTGAAAATGAGTCATGTGATGGAGGCGCTGGATGAGatgttctcctcctcctacatcaCGGCCATTAGGTGTGCATCGTTGCAGGAACAGCTCTTCCTGAGGGCGGTCATTGCTGAGTTCAGGCGACTGGGACTGGAGGAGGCCACCTTCCAACAGGTGTTTGTGCAGCACCGGACTCTGAGTCGTGTGGAGGGCCTGCAGCCCATCAGTTTGTCCGAGGGTCTGGCCGTGTGTCAGCGTCTGGGTGCGTGTCGTCTGCTGCTGCTGGAGGCCAGCCGTCTAGACATGCTACAGCGGGTCAGACTCAACGTCAGCCAGGATGATGTGCTCTACGCACTCAAACCTGTCAGAGACTGAGGACCACCGGAGGTCCTAAGGTACAGGGGGGAGGATGAAGGTCTTTTTGGGGCCTAGAAGGGAACCTGCTCCATCACTACCAGTCAACTTGGTCAGTTTGATAACTACAACTCCTCAGGACCACCGTTGGACCACACAGTCCCACGCCTCAACCACAGCCAATACTACTGTACCACTCAGGACCGGGAATCTGTCCACGGTGGGGCTTTTTAGAGGCTCAGTTTGGTTTGATGCCGTCTTCTGAGAGGTTTTAGGAAATCTTCTGTTTTAGTGTTCTTTTACAAATGCTTTTCAATGTCATTGTTGTCAGCACATCATTTTTGGAAGCTCTTGATGGGGAAACTGCAGTGCATTTGACCACTTTATGGAGTTCTGTCATAATTCAAGAACACAAATCATGATTTCTATTATATTGGTTTTACGCTTGTTTACTGAAAATTGCCCTTGTTACAAAAGGATATTTAGATCTGGTTGTAACTCATTGTGTTGATGGGAGAAGAGCCAACTTCCCATCACAGTTAGCAATTTGACTTTCCTCTTTATCTGTATTCAAGCATTTTAATGTTTCTCTTGTTGGTTTTAGGATGTTCTTCATTATTGTTGTGTGAATATTGTATCTACAAAAGTAATAAAGATATTTAATAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512650 lncRNA downstream 72657 88328321 ~ 88329273 (-) True G452885
TU512642 lncRNA downstream 98904 88301398 ~ 88303026 (-) True G452878
TU512639 lncRNA downstream 101630 88299976 ~ 88300300 (-) True G452875
TU512638 lncRNA downstream 102258 88299200 ~ 88299672 (-) True G452874
TU512609 lncRNA downstream 148583 88252965 ~ 88253347 (-) True G452852
TU512810 lncRNA upstream 158498 88571293 ~ 88571540 (-) True G452979
TU512813 lncRNA upstream 164750 88577545 ~ 88577825 (-) True G452982
TU512831 lncRNA upstream 185355 88598150 ~ 88598404 (-) True G453000
TU512871 lncRNA upstream 221489 88634284 ~ 88634582 (-) True G453040
TU513459 lncRNA upstream 250678 88663473 ~ 88663756 (-) True G453561
XM_036978662.1 mRNA downstream 46862 88348333 ~ 88355068 (-) True c5h1orf210
XM_036978660.1 mRNA downstream 53842 88305928 ~ 88348088 (-) True ap1m3
XM_036978661.1 mRNA downstream 56643 88305928 ~ 88345287 (-) False ap1m3
XM_021604649.2 mRNA downstream 133790 88262575 ~ 88268140 (-) False LOC110524751
XM_021604664.2 mRNA upstream 4622 88417417 ~ 88419134 (-) False LOC110524758
XM_021604663.2 mRNA upstream 4622 88417417 ~ 88419175 (-) True LOC110524758
XM_036978692.1 mRNA upstream 27707 88440502 ~ 88469581 (-) False LOC110522897
XM_036978693.1 mRNA upstream 27707 88440502 ~ 88469581 (-) True LOC110522897
XM_036978705.1 mRNA upstream 738937 89151732 ~ 89253943 (-) False mast2
TU512280 other downstream 326925 88074594 ~ 88075005 (-) True G452575
TU512218 other downstream 395343 88005919 ~ 88006587 (-) True G452517
TU512205 other downstream 417297 87983960 ~ 87984633 (-) True G452504
TU512158 other downstream 506718 87894732 ~ 87895212 (-) True G452457
TU512143 other downstream 535466 87860127 ~ 87866464 (-) True G452442
TU512830 other upstream 182656 88595451 ~ 88596395 (-) True G452999
TU513651 other upstream 738945 89151740 ~ 89154263 (-) False mast2
TU513653 other upstream 738945 89151740 ~ 89154263 (-) False mast2
TU513654 other upstream 738945 89151740 ~ 89154263 (-) False mast2
TU513655 other upstream 738945 89151740 ~ 89154263 (-) False mast2

Expression Profile