RNA id: XM_036978693.1


Basic Information

Item Value
RNA id XM_036978693.1
length 1838
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110522897
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 88440502 ~ 88469581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGGGGGTGTGAGAGGTGCTGCTGAGGAGTTTTTTTCTCCCTTCACACAGGCCTAAGAAAGGACTAGTTCACCCATTTTGTGGAGAAAACACAATAtatgttgatttttttttaaggGGGTGCTGCAGCTACCCCCAGCACCTCTACTTCCTGAGGCGATGCCCACCAGCATAATGCTGTGAGGGACAAACATTCTACAGATCTTTTCAGATCCTCCTCCCGATGGACTATGAAGACCAGTGGAGTGCTTTTGCTTACTGGGACTAGACTACTTACGGAAGATAAATTCGTATTGAAATTCTTCATTATTTTCTGACCAACTGTCGAATCCGTTTTAACAGATCATCTATCTCCTTTCTCAACAATTTACCTGATCACCTGCTGATGCAAGCCCTAAATCAGGAGGAGCATGTCCAAATCCAAACCCGTGGACCAAGCCGAGCAGACCTTCGCTATGTGAACAATGGCCATCCTTGACTGGTTTGAAAAGAAAACCGCAAGTCAAAGAAAGGCGCCGGCATTCCTTTACCGAGGGAACATTGATCAACACTGGTGCTTGGAGACCGTACAAAGAGAGGACAGACCACCAGACTCTACCCTGCAGAACACTACTGCCCTCTACTGGTAGGAAGTGGTACTCTATTTTACATCCACGGGACAATGCTCATAGGAGAACAAAGGACCAGCCAAGCTCATCACTGAAGATAAGCAAAAGATCGTGCAGGAAATCAGCAACTTAACAACAATGATACTTCAAATTCATTTCAAGATCCTCTGCAGTACTGAAGAGAACCCTGGTCTGCCGGAGAACCCTCTCTCTGGAACCTAAAAGACACCACACTGGTAGCAGTCATCTTCTGAGTCTAACTCTTTAAGGCACACAGGCCATCTCTACAACGCAGATTAAAATGGCATGCTTCACATTCTTCAAATTCATGATGGTCTTGTTCAACTTGCTTATCCTTCTGGGGGGTCTGACCCTGCTGGGTGTGGGGATTTGGGTGCATGTGGATAAGGGTTTGTTCCTACAGGTGCTGAGTCCCTTCTCCACCCTCGACATGCAGTTTGTCAATGTGTGCTTCTTCTGCATCGCTATTGGAGGAGTGCTGGTTCTACTGGGTGTACTGGGCTGCTGTGGAGCCCACAAGGGGAGCAAGTGTCTGCTGCTACTGGCCGAGGGGATTCTTAAAGCATGGGCCACACTTGTCTTGAAGAACCAGTATGGCAGCGATCCGGTGGTCACCAAGATCTGGAACAGCACCATGATCGAGCTGAACTGCTGTGGCTTCACCAACTACACAGACTTTACTGACTCCTACTACTCTGAGCAGAGTGAGGGCAGCTACCCACCCAGCTGTTGCCAGCTAGACACTGCCCCCTGCAGCCAGCAGCAGGCATGGCACAGTGCTGTTCAGGGCTGTTTCAAACAGCTGTTGAAGGCCCTTCAGAAGCATGCCAACATCGTAGGTGGAATAGCCGTAGGCATCGGAGGGCTAGAGGTGGCAGCGATGCTGGTATCCATGTACCTGTACTGCTATCTGGACAACAATGTCAGCTGAGACTTTGTATTGGACAGACAATATGTTGTTATGTACTGTGAAAGGTTAATACTAGTGATTGTAGTGCCATTATATCTGATAGGTTGCCTTGATGTTATTATCTACAAATGTATATCAGTTATCCATTATTTCACGTTTACTAATCAAGTGAGATATCTTTTTAATTAATAGCACACAAACGCCAAAACATAGTACTGTAATTGTGTGTAATGTTATTTTAGATGTTGTCACATTTATCTACTGTAAATACTTTACATTTACAATAAATTTCAGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512680 lncRNA downstream 37481 88401973 ~ 88403021 (-) True orc1
TU512650 lncRNA downstream 111229 88328321 ~ 88329273 (-) True G452885
TU512642 lncRNA downstream 137476 88301398 ~ 88303026 (-) True G452878
TU512639 lncRNA downstream 140202 88299976 ~ 88300300 (-) True G452875
TU512638 lncRNA downstream 140830 88299200 ~ 88299672 (-) True G452874
TU512810 lncRNA upstream 101712 88571293 ~ 88571540 (-) True G452979
TU512813 lncRNA upstream 107964 88577545 ~ 88577825 (-) True G452982
TU512831 lncRNA upstream 128569 88598150 ~ 88598404 (-) True G453000
TU512871 lncRNA upstream 164703 88634284 ~ 88634582 (-) True G453040
TU513459 lncRNA upstream 193892 88663473 ~ 88663756 (-) True G453561
XM_021604663.2 mRNA downstream 21327 88417417 ~ 88419175 (-) True LOC110524758
XM_021604664.2 mRNA downstream 21368 88417417 ~ 88419134 (-) False LOC110524758
XM_036978683.1 mRNA downstream 27706 88401930 ~ 88412796 (-) False orc1
XM_036978685.1 mRNA downstream 27706 88401930 ~ 88412796 (-) False orc1
XM_036978689.1 mRNA downstream 27707 88401930 ~ 88412795 (-) False orc1
XM_036978705.1 mRNA upstream 682151 89151732 ~ 89253943 (-) False mast2
XM_036978704.1 mRNA upstream 682151 89151732 ~ 89262052 (-) False mast2
XM_036978707.1 mRNA upstream 682151 89151732 ~ 89262052 (-) False mast2
XM_036978706.1 mRNA upstream 682151 89151732 ~ 89315514 (-) False mast2
XM_036978701.1 mRNA upstream 682151 89151732 ~ 89465995 (-) False mast2
TU512280 other downstream 365497 88074594 ~ 88075005 (-) True G452575
TU512218 other downstream 433915 88005919 ~ 88006587 (-) True G452517
TU512205 other downstream 455869 87983960 ~ 87984633 (-) True G452504
TU512158 other downstream 545290 87894732 ~ 87895212 (-) True G452457
TU512143 other downstream 574038 87860127 ~ 87866464 (-) True G452442
TU512830 other upstream 125870 88595451 ~ 88596395 (-) True G452999
TU513651 other upstream 682159 89151740 ~ 89154263 (-) False mast2
TU513653 other upstream 682159 89151740 ~ 89154263 (-) False mast2
TU513654 other upstream 682159 89151740 ~ 89154263 (-) False mast2
TU513655 other upstream 682159 89151740 ~ 89154263 (-) False mast2

Expression Profile