RNA id: TU513653


Basic Information

Item Value
RNA id TU513653
length 2457
RNA type TUCP
GC content 0.46
exon number 3
gene id mast2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89140981 ~ 89465997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGTTGGGACTTGGGAGTGTGTTTTAGTTAGTGTAGACGTCTCGTAGTTAGTTACCCCTATTAGTGCTGTCTGTCCCTGACTGATATCTCAGTTGGCCTGTAGGGTCGGGGATGGGTCAGCAGGGGGGCGGGCTTTGCACAACCCTTTTATCGCTGTCTGTCAAATGAAAAGACAACTAAATAAAAGGAAGGGCAATCAGATCCCTGGCTTTTAGGTCAGTCACAACGATGTTGACCAATCAGATCCCTGGCTTTTAGGTCAGTCACAACGATGTTGACCAATCAGAAGTCTGAACTGACCGAACACCACTATGATCCTCCAGTCCCACTGCTACGTGTGGGGGTTTGTGGGTGTTCGTGGGTGTGGGCGTTCATACTTGtgtgtattcctgtgtgtgtgtccctgcgtgtgtgtgttcctgcgtgtgtgtgttcctgcgtgtgtgtgttcctgcgtgtgtgtgttcctgcgtgtgtgtgttcctgtgtgtgtgttcctgcgtgtgtgttcctgcgtgtgtgtgtgggcgttcATTTGTGTGTCTTAGTTTGCAAAGTAAGGGGATGTTGCCGTGTTGTAAAACTGTGGCTACCTGCAGCATACATCACTTTGTTTCTGTGTGAGAGTTCAAATTTCCCTCGGGGTGTCCTGCAAAGTTTTGTTGCTGTTGGAGATGTCGCAAAGAGCAGCTCAATGGGATGACTGACTGAGGGTGAGACAGGACTGGTGTCTATAGATACTAAAGAGATCTGTGTTGTCAATACctaacgacagacagacagacagaccgtccGTGGCTAGCGATTTCTGTAATGTGTTTCAATGTTGTTCAATCTTCCTCAATGCTACTAGACATCAACCTCTGTAACAGGCAGTGATAATTATTCATGTCAACAGCTTTCCACACTGTAAAGTTACCCTGGATCATATCAGTGTGACTGGTTTGTTATGGCCTCTACCTATTATTcatgtaacctaaccactgacgGACCACAGACAATGTTCATGAGGAGGAACATTGTGCATATAATGTTTAGAGGTtcggccatggtcaaaagtagtgcactatataggaaacgGGGGGGACCTGCGGTGTGAATAGTGGTATCCTCTAGTGCAGAAGGATAGAGGGTAGGTAATGTGAGGTGTAGGCCCTAAGTCCTCCCAGAGAAAAGCTGTCATTTGTCACTGGGACAGATCGGCCAAGCTTAGCGTTGGGATTTAACAACTCTGCTGTAGCCAATCAATCAACCCCAGACTGAGAGAGCATCTCCTCGTTGGCCGAATATGTCAGGTGACTCAAATTGTCATCCTTCATTTGTTTCTGTGTGTTGAGGGTTATTTTATATCAGCTAGAGTCATGATTTGAAGACAAGTCTCTGTGGCATTCCCCATTTGATAGTAAATTAATGTTGTTCACTTGGCCCCTGCACATCGAATGACTATAGTCCCAAAACTGATCTGAAGTTCTGATTTGATATGGGTCATCCCTATAAGAATAGTTTCTAcagtgtgtattgtgttgtatgtCATCTCATCTGGACTATACTGGTGGCCCTGTTGTTATTGCTGCTTGGACAGCTGCTACTCTCTCTGACCCAATCCGAGTGCCATCCTTCACCGCCAGGCGCCTGACCATCCCTGACATTCACTGTTGTATCACACAAACATCGTCTGTAATGTTGCTGATCCAGCCATCTGTCAGAGAGTGAAGTCAAGTGTTAGTTTCCCTGGTGGAGTAATTCATCTTTAGCCCTGGGCTGTTGGCtgctcccaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacaaacaaagCAATTTCAGCCAAACAAAACACTACCTACCCCCTAGTCTGGGCCCATCACCTCCAATGTTCAGTTAGGCCCACCAGAGCCCAAAGCCACGGTAGCTCCCCACTGTAGgggctgtccctctctctctctctctttgttaacCCTGTGGGTAACCTCCACCCTGGACTTTAGCCTCACTACATCTCTACAGACAGatccatacagtatgtgtttttaTTGTAGCCACAGTATGCGTTGTGTGTTAAAGCCCATAGCGATGGTAGGGCTGTCTGTGTGCAGAGACCAATGCCACTGAACTGAGGGAAGAGGAGACTGTTGACTTCATATTATGGACTCCCCAGTGTTTAGGCAGTATTTTaaagactgtgtgagagagatcctgtgtgtgtgtgtgtgtacagcgtgTGTGTGAAGGAGAGGAGGTCTGTCTGAAAAGGGTGAAGAGAGATCCTGTGTGTCTGAAGTGTGAAGGAGAGGAGGTCTGTCTGAAAAGGGTGAAGAGAGATTGCTACAGTAAAACCAGTGCaatatctttttattttttattgtggttAAACGCATGTTGTTGTTAATCCTACATTATCATAATAATAAAGGTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513641 lncRNA downstream 113970 89037223 ~ 89037770 (-) True G453732
TU513637 lncRNA downstream 134840 89016671 ~ 89016900 (-) True G453728
TU513636 lncRNA downstream 139838 89011220 ~ 89011902 (-) True G453727
TU513633 lncRNA downstream 149334 89002196 ~ 89002406 (-) True G453724
TU513627 lncRNA downstream 182763 88968697 ~ 88968977 (-) True G453718
TU513740 lncRNA upstream 32537 89186800 ~ 89189317 (-) False G453802
TU513741 lncRNA upstream 32795 89187058 ~ 89189317 (-) True G453802
TU513776 lncRNA upstream 75436 89229699 ~ 89236608 (-) False G453823
TU513773 lncRNA upstream 76962 89231225 ~ 89234023 (-) False G453823
TU513799 lncRNA upstream 100424 89254687 ~ 89255412 (-) True G453838
XM_036978692.1 mRNA downstream 682159 88440502 ~ 88469581 (-) False LOC110522897
XM_036978693.1 mRNA downstream 682159 88440502 ~ 88469581 (-) True LOC110522897
XM_021604663.2 mRNA downstream 732565 88417417 ~ 88419175 (-) True LOC110524758
XM_021604664.2 mRNA downstream 732606 88417417 ~ 88419134 (-) False LOC110524758
XM_036978685.1 mRNA downstream 738944 88401930 ~ 88412796 (-) False orc1
XM_036978719.1 mRNA upstream 311908 89466171 ~ 89522136 (-) False pde4dip
XM_036978709.1 mRNA upstream 311908 89466171 ~ 89528218 (-) False pde4dip
XM_036978710.1 mRNA upstream 311908 89466171 ~ 89528218 (-) False pde4dip
XM_036978711.1 mRNA upstream 311908 89466171 ~ 89528218 (-) False pde4dip
XM_036978713.1 mRNA upstream 311908 89466171 ~ 89528218 (-) False pde4dip
TU512830 other downstream 555345 88595451 ~ 88596395 (-) True G452999
TU512280 other downstream 1076735 88074594 ~ 88075005 (-) True G452575
TU512218 other downstream 1145153 88005919 ~ 88006587 (-) True G452517
TU512205 other downstream 1167107 87983960 ~ 87984633 (-) True G452504
TU512158 other downstream 1256528 87894732 ~ 87895212 (-) True G452457
TU513777 other upstream 79962 89234225 ~ 89236608 (-) False G453823
TU513778 other upstream 80653 89234916 ~ 89236608 (-) True G453823
TU513891 other upstream 287321 89441584 ~ 89442377 (-) True G453915
TU514429 other upstream 654772 89809035 ~ 89812305 (-) True trmt1l
TU514643 other upstream 991562 90145825 ~ 90146313 (-) True G454579

Expression Profile