RNA id: XM_036978711.1


Basic Information

Item Value
RNA id XM_036978711.1
length 9446
RNA type mRNA
GC content 0.54
exon number 33
gene id pde4dip
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89466171 ~ 89608651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGAATCTCTGTCAACGTTTCCATCTCGCCCTGTTCGGTAGCCTACCTAGGCTAATAAACTATGCACGTTAAAACCCGTGGAAACCAAACCTCCCGTTCCATCCTCATCACACCGTCCAGTGAACTGCTATCATGGAGCCGAAAAATAACGGGTCAACGATGTATTTTTGATGAGGACGTCTCTACTACGTCTTTTCGTTTCGGGTGGTGAATTCCGTGTTCGTGTCGGATTAGCCGCGATGAGACAGTGGAACTGTCATTTTGTTGTCTTGGATTAGCACTGTTAGAAAATATGAGATTACATCGGCATTTCGGCAGTGAAACAAAAATAGCCTGACAAATGTTGTTTGATTCTGTAACCAGCAGGTTTGATGTAATGTATCTATCAGCTTGATTACATTTTTTATCATTGACGAACTGAAAGTGCTGCAGCCCCTGCCGCAGACAGTGACATTGTTACAACGACAATGACACTGGGTTTTTTACTGCGCTCATCACAAATGAGACGTCTCTTCCTTATTATATTCCCTATTGACTATGTTTGATTACAGTCTATATTCTTTAGATGACATTGAATAGAAGTCATCGCGTTGATATAGAAATGAGTGCGCCCTTTCAAATAACTGCAATGCGATGGTATACCCGTTTCTGTAATGCCGTTCTTCATCGAGGATGCAACAACGAGGAGTTTTTACCAACAGCAATATGGCACAATGCACTAGTTTATGTATTAGGCTAATATTGACCTGTTTATTTTGAAGATAacttttttaatacatttaggTATTTTATTAGGACCCCCATTGGTTGTTGCGAAAGCAGCACATTGAAGAAAACTACATGAACATCGCACAGCTAAATCATTTCAATCTATTGATTTATTGATGGATTATTGATATCCAACCTGTTGGTACAAGACACCTTATTTTATTGCCTGAGCAATCAGAACAGACACAATCGCCACCCCACAGTAAAACTGAAAGCAGATATTATCTGTGATGTTGGATGTCAAAATGAAGGAGGTGTGTCGGATCTGTGCCCGCGAGCTCTGTGGTAACCAACGGCGATGGATCTTCCATCCGGCCTCCAAACTCAACCTGCAGGTGCTGCTGTCCCACGCCCTGGGCAGAGAGCTGACCCGCGACGGCCGTGGGGAGTTTGCCTGCTCCAAGTGTACCTTCATGCTGGACCGCATGTACCGTTTCGACACAGTGATCGCCCGTGTGGAGGCTCTGTCCCTGGAGCGCCTGCACAAGCTGCTGCAGGAGAAGGACCGGCTTAGACAGTGTATAGGAGGCCTGTATCGGAAGAACAACACTCAGGACCAGACCCGGGATCATACTGGGATGGGGGGTActggggaaggagagacagagggtggtggGCGGTCTGAGGGTGACTCCCCTGTAGTGGACCTTTCAGCTCTGCAGGAGGCCAGGTACAGCGCCCTGCTCCAGGACGACCTAGCCTACTCTGTGTACGAGTCCTGGGCCGACCACGAGGACCAGCAGAGCCCAGCCCCAGACCCCCAGCACCACACCCAGCATCATCACCCTCAGTGCACAGGATCGGAGGCTCTCTCTGGGCATCGCTCCAGGCGGTGCAGGGGATGCGCCGCTCTCCGTGTGGCTGACTCTGACTACGAGGCTGTGTGTAAGGTCCCTAGGTGGGTGGGCAGGAGGAGCACGTCTTGTGGACCCTCTACTCGGTACTCAGGCAGCACCTTGGGGGGCGAGGAGACCTCCACAGGGTCAGAGTCCACGCCTGTCCCCTCCGAGTCCCCTCCCATGGAACCAGAGAGCGACAGGACGCTGTGCGATGGGGACCCAGAGAGGATGACCCTCAGCCCGGGCACGTCGGTTGAATCTCTGGACACAGCTGTGGACGTGGCTCGGCCCTGTGCCACCCaccgagaggaaagagagagaggagagaaggacccAGGGAGGGTTCAGAGGAGGGGCCCCCACCTCCAGTGGGATGAGGCCCCCAGGGACAAGTCAGTCTCTGGGTTGACCCTGGATCTGGCGCTAAGTCTAGTGAGGAACTGGGAGTACAGACCTCTAAAGTCCCCTCAAGGCAGCAAGCTCCCTATCCTAGTTAAACCCAAACTGGAGATGGGTCTCCCCCAGTCTCGCAGTACCCCAGACTATGAGCTCTACTCCCACCCTGCCATCCCAGATCTGGTGACCCCCAGCAGTCAGCAGGAGCTGCAGACAGAGCTGTCAGCGATGGAGGAGCAGTGGCTGGATGACTATGTGCAGTGTGGTCCCTTCCGCTTCCAGCAGAGGCTGCTAGATGAGCAGCAAGGCAAGCTGTCACAGTATGAGAGTGCTGCAGGTCACTGTGTTAGTGAGCTCCAGAAGGCCCAGCTCCAGGTCCACTCTCTACAGGCCAAGATCAGAGAGAGCGAGGCCGGGAACCAGAAGCTGCAGGTGCGACTGGGGGACATGGAGTGTGAGCTGCACTTGGTCAGAGAGGAGGCACAGAGACAGGAACGAAACGTCCTCAACCTCACTGACGCTGTCAACAGCAAGGACACTGAGGCAGCAGAGTTGTACCGAGTCGTAGAAGAACAGAACGACATGCTGTGTTCTCTCAAAGACCTGGCCAACAGACACCAGGTCCAGACACTACAGGTGTCTGGGTCTGAGTCAGTTCGAGGGCAGGGGAAGGTGCTGGCCCTCCAGGGCTCTCTGTTCCAGGCCCAGCTGGAGCTGCAGGCAGGCCAGAGGGCCCAGCGTCAGGCTACCAGgaaggaggaggacctgaccagAGCCCTGATCCGCCTGGAGCAAGACCTGCAGGGGGCCGTGGAGCACAGACACAGCACTGACAGACACAACCAGGACTTGCATCTGGCGCTGGAGAAAGTTCGCTCAGAGCTGCAGCAGAGAAAGGAACAGCTGAAtgaaaaggaaggagagagactgagagcggAGGAGGACATGGAGAAAACCATCAGAGAGCTGAGGACCTCGCTTCAGAGCAAAGAGCAGCTTGtgcaggAGTACTCAGAGTTGTTGGACCAGCAACAGGGGCCCAGGGAGAAGAGTGATTCTCTCTTCTCTAAACTGAAAGAGCGCatcaaggagagggacagagcacTGGAGCGAGCGGTGGATGAGAAGTTccgctgtgtggaggagaaggagggagagatacgGCGGCTACAGCTGCTgctcagagagaaggagagagacctgGAGAGACAACGCTGTGTATTGTCCAACAACGAAGAGACCATCATGagtctgGAGGTGCTGGTGCGTGGGAAGGGTCTGGAACAGGAGCAGGTGTGTGAGGCGTGGAGGAGTGTACAGCACCATCATGCAAACAGTGAGGAGAGACACAGCCgcagcttgagagagagagatgcactcaTCAGCCAGCTACAGAACGCCCTGCACACACGTACCAAGGAGGCTGAGGACCTGACTGGAGCCTTGCTAGGTAAGGTGAAGGCAGGTCCCagtgaggtggtggaggagatgaAGGCTCGCCTCTCTCTGAAGGAGAAACTGTTCCAGGAACTGCTGTCCGACCGTGGCCGCCAGGCCCAGGAGCACCACACACTGGTTCAAGACCTGCTCGACACCATAAGCACCAGGGACCAATACATCCAGGACTCAGCAGGTCGTCTGGGTGAGGTGATGAGTGAGCAGACTGAACGTCTCCAGGAGCTCCGCAGACAGCTAACTTCTGGCTCCCAGGCCTACGGGTCTCAGCTAGGCCTCCAGGGTCCAGACCTCCAGGGTCCAGACCTCCAGGGTCCAGACCACCAGGGGACCAGCCAGAACTTCCAGGCCCTGCAGGAGGAGCTACGTCTGGccctgaggagggagagggaggcccAGGCTGAGATCACAGCCCTCAGGACCATGGCaggccagacagacaggccagtCAACAGGCAGGCAGAGTTTGGAGAATTCAGCtcagaggaagaggatgatgtcaACAGTGACTATGCAGacagcatggaggaagaggagtcCAAACTGACAGCCCAAACCCTAGCCACAATGCAGAACGCAGAGCTTCATGGAGGACCTGGGAAAGGGAAGCTATCCCAGGATCCTGTGGGAGAGGGCCAGGGGCTGGTGGAGGTGAAGCAGCTGGTGCAACATAAGAGGGTGGTGGAGAGAGAACTGCAGGAGCTAAAGGTTCAGCTGGAAAAGGCTGGCTTCTCCTCCCTGTCCCAGATGAGGAAAGCCCTCTTCAACCTACGCATGGAAAATAAGGAACTGAAGTctcaccagacagagagacagccagagacagaCCTTAGGCATGAACATATTcttcaggaggaagaggaggatgaagaagaggtggatgaggaggaagaggaggaggagctgtgTGGGTCTGAGCTGTGGGAGGCCTGGGATGATGACTGTCCTTCCCAGGGGAAGTGCTGTGCCCCCAGGCCCACCCTGAGAGACCCTGGCCTGGGGAGGAGACACTGCACTAGGCCTGTATCTCTGGACCTGGGAGCCATGCTGTCCTGCTCCACACAGgatgatgaggaggaggcaggaagagaggCTGGAGGCAGGCGCCACAGCGCCACAGAGACAGTGATGGTTGAGATGGCTGTACGTCTGCAGCTAGAGAGCAAGGAGCTGAAGGAGAGACTCATGGTGTCTGAGGCCACGGTGCAGGCCCAGGCTGAACAGCTCAAAGACTATAGAGACCTACTAAcaGAGACATCAGTGCAGCAGGACAGTAAGCAGGTCCAGGTGGATCTCCAGGATATGGGTTATGAGACGTGTGGCCGCAGTGAGAATGAGGCTAACAGGGAGGAGACCAGCAGCCCAGAGTTTGACGATCTAGAGATGTGCACGTCTCTGGAGTGCGGCGGCTCTCAGTGGTGGTCAGGCACTGTGCATCCTGGGAAGGCCGGTCCTCCAACATCAACCTCAGAGGCTGACAACATGACATCTCTCCAGCGATTGGTTGAGGACCTTCGCTCGCAGCTCTCCCGCTCTCAGACAGTGATCAGGAGCCTCCAGGGCCGCCTGCGCTCTCTTTCAACCTCCAGCGAACTCTCCATTGGCCCCTCCATCCCCCGCAAGGTCAACTGGGGAGTCCAGTTCCAGGCCTCGCCCTCACAGAGCGGCCCAGAGGAGGACGAGGGCTGGGAGTCGTCTGGTGGTGGTCTGGGGCCCTCGCCGCGCCACCCCAAACCTGACAAGGACCTCCAGGAGCTGGTGTCCCGCGTGGGAGCCCTGGAGGACCAGCTGAGAAAGGGCAAAGGGACCCCAACGCCCACCGAGGAGGGCAAGGCTACCAGCTGGCCTGGGCCGGGGAAGTTTAACACTCTAATCCAGGCCCAGGCCCGTGAACTGTCCCACCTGCGCCAGAGGATGCGTGAGGGGCGCGGGGTGTGCCACATCTTGATCCAGCACCTGGGTGACACCACCAAGGCCTTCGAGGAGCTGCTTCGTGCCAACGACATAGACTACTATATGGGCCAGAGCTTCAGAGAACAGCTGGCACAGAGCAGCGCCCTGGCACAGAGAGTCAGCACCAAGATCAGCGGACGAGACCATCCCAAGATTCCCGACGACAAGACTGGCACAGAGCTGCTCGCCATACGGCTGAGTAAGGAGCTCCAACAGAAGGATGACGTGATCGATTCTCTCCGCGCCAAACTCACTCAGCATCAACCTCGTTCTGACACACCATGCAGTAGCCACGCCCTCTCTGACACCACCGACCAATCAGACCACATCTCCTTTGTGTCCGATGAGCAGGGCTCCACCAATGAGGATCTGGAGCCGTGCTCAGACATTGACGCGGCCAGTGAGTATGGCCAGGAGGACAGACATGCCTCCACTACAGCCAGTACAGaTTCTCACTGTAACAGTGTCCCCATGTCAcgccacccctccatccctccttccaccAGTTCATCTCATGGACACCAGTCCTCCATCAGCTGTCCCAGCCTGCAGCGGTCagcggacacacagacacagacagGACTCTACAGTGGACCAGTGTCCAgttctctccccacccctcctcagccccagtctcagtctcagtcccagtctcagccccaatcccatcctcagcctcagccccagtcccagtcccagtcccagtcccagccccgcTACCACTCCGACCTTTCTTCTCAGAGAGCCCCCCTGTCCTTCAACCCCCAGACTGCAACCCTGCGACCCCGTTACCATGGAAGCAGGCCCGGGGCCTTCTCCCTGGCAGAGGTTCACCAGGAGCTGCAGATGTTACAGAGACAGCTAGGAGAAACTGAGAGTTTTTCCGTTCCTTCAGTCAAGCCGTTTGGTGGCTTCCCCATGTCagcccacccccacccccagacTGACCCCTCCAGTTACATGCCCCAGCCTCTGTCCTACCACACCTTCCACCCCGCTGGTCTGAATGCTAGCCTCAATGCTAGCCCTGCCATGAAGGCAGGCGCCAGCCTCCTGGAGAGCAGTGCAATGTGGGACATGGCCTACGGTGCTCGGTCAATGAGAGTTGGCACTGCTGATTTGTCATCAGGGTCGTCAGGTTACCAGTCTGGCACCAGCCATACAGGTTCTGACCTGATTAAAGAACACCTGAGAGAGATCAGGAGTCTACGTCAACGTCTGGACGATTCCATCCAGACCAACGACCTCCTCCGACAGCAGCTGGAGGAGAGACTGGTCAACCAAGCCAGAGATAAATGTGCTCCCACCAACATCTACATCCAGGGCTTGGACTCTGTCAGTCAGTTGTCCAGTGAGATCAGAGTTCTGAAAGTGGAGAACCTCAGCCTGCAGGACCGACTCCAACAGGCCAGCAGAGACGGGAGTAAGGAGGCGGAGCAGCTGCGCGAGGCGGTGCTGTTGGGGCGTGCCCGTGTGAAGGAGGCGGAGTTAGAGACTGAGCGGTGGGCGGAACAGGGCAGGAAGCTGCACACGCAGACACAGGCTCAGACCCTGGAGATCACTCAGCTGAAACAGGACAGGCAGAACAACCAGGAGACCATCAACAGgtTGCAGCACGATGTGAATGTCCTGCAGCAGCAGTTGTGTGAGAGCCGTGGCCTGGCCCACTCTCTACAGTATGACCTCCAGATATGCCACAGAGGGTGTGGCGTCCCCAAGAACATGAACACAAGTGAGAGGTCACACTCAGAGGAGTCTGCACCCTTTAACCCCAGGGACCTGCATGTTCAGCTAGGGCAGCAGTTGACGTCTGGGACACGCCTTCCTGGAGCCAGGATACAGCTCTTCCATGACCCtgctctctctacccctgtccgAGACACTGGACTCTTCAgcccttcttcccctctctccctcacactggaACCCCGGGAGGTTGACTTTTCTCTCGAGGGCCAGGCTCCAGACGGCTCCTTCGCCAACCGGAATGGCCACCATGTTGTGGGCCACGTGGATGACTTCAGTGCCCTGCAGCAGCAGATCCTGGAGGGGCGCGTCCTCATTGGCAAGATGGAGGTTGCCCTCCGGGCCACCGCCAACCACACCCTGCTGGAGCTCAGCCCGGACAAgCCTGTGGACCCTGGCTGTGTGAGGAGTCTGCTGACCTGCTCTACAACCCTGAGGAAGATCCTCGAGGATGCCAGCTCCCTGCTCAGAATGTTCTGGAGGGCAGCATTGCCCAATAGTGAGGGGTCCACTCAGAGCACCAAGACGgagcTGTCTCTAAAGGAGGTCCACACCATGCGTCAGCGGATCTCAGAGCAGGAGGAGGCTCTAAAGGACGCCATGGAGAGACTGAAAAGCTCCAACCGCACCAAAGACAGTATGGAACACTTCATCGTCAGTCAACTGTCAAGAACAAAGGATGTCTTGAAGAAGGCACGGACAAATTTAGAGGAGAACGAGCAGAGAATGTCCTCCCTTGGCCTCacttctttcccctcctcctcttcctcttcctcccatccCTGGGTTGGTAAAGGTGAAAACCCAAGAGGCTTCTGTGAGCTCACCCAGTCTGCTGGTTGGGGTATCGTGAAACCCCACATACAGGCTACATCACCCAGGACCCCTACGGTCCTGTGGCCTAATACCCAGGGTCTGACGTACCGCGTTCCCTACAGGCAGCTTCTTTGTGATGCACCAGCTCCAAGTTCCTCCTAATACTGGGAGAAAGGATACTTCCTGTTGAAACATGGGACATAATCTCAGGTTTCTGGTTAAATAGGGAGAACACTTTAGTTGAGGGGAGACTGTCTGATAGTCAGTAGGGGTTCAGCCAGGTGCTCTCTGTGATGCTGTTGTATGCCAAGCAGAACAGTGGTTAATGAATGTTGACGACTGTCTTATGTCAGGTGTTATGTATAGCTTATGTAGGTGTTACGAAGGTACCTCAACTGAAGTGTTTCCCCTATTTTACCTGAGACATATATTATGTTTTGAGCTCTATATGAAACCTCTTCAAGGATCCTATGACAATCAACCTTGAACAAGCCAGGAATAGAGGCTTTTAAAAAGCCAAACAAGACTAAAGTGCTTCCTTTTCGCTTCTAACAAGGCAAgtttgtaagtgtgtgtatgtgtaaagtAGTTGCATGTTGTTTGAGGGAAAAAAAAGCCATATTTATAGATGTTAGATACCTTGTTTGTTTCGTACGATACTTATTCTGCCATTGAAATGGTCTGTTACTGATGTCACAAGATGTAAACACTATTCAGATTTTAAAGATCCTATGGATGGGTTGACCCTAGAACTGTCTTCCTGCTGAACTGCTAGAACCTGTAACCATACTAAAGATGTGAAGATTGTTCCCAGCTTTAAATCTAGTCTCTCGACCTAAGTCCTTAAAGCAGGCGGCATACTGCTGCCAGCTGCAATACATTCAACCTGCTGATGTATTCCAATGACCTATTTAAGAAAGTGACATGAGCATTTGGTGCTTTGTCCAAAATAAGTTGTAAATGTTACATTTTTGATTTTAACAGAATTGCCTCCGAGGCTAATGGACCACACAATGTTTTTTAATCCAAATTTGTAAAGTTGTTTTAATTTGGGCTAACATTTAAACCCTtctaagacaaaaaaaaaaaaagtcaatattATTTTGATtcaacttttttttctttctgttgTAGTAACCATAGATGTTATTTTCTATTAACAAAATCTGTGACAATCATCAGCAGGATATGTGAAAACTTGGTTTCTTACACTGAGATATGCAAAGCTGTATCTGTATAAGATAGTACATCTTACTGTATGTACATAATGGCAGGGGTGTACATTAAAACAGCTTTCTTTTGTGTCAGGAAGAGGGGGGTCTGGTGTCAAGGTCAGGGgcttcatttattttttatgcaTGTGTTATATATCAAATCCAGTTTTATTTGTTGAattccgtgaaatgcttactttacaagcccttgtTGTTTTAGGGAGAAGCTTTTCAATAAAACGGGACTAAAAGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513885 lncRNA downstream 39985 89425924 ~ 89426186 (-) True G453909
TU513842 lncRNA downstream 122584 89343100 ~ 89343587 (-) True G453877
TU513682 lncRNA downstream 146625 89316536 ~ 89319546 (-) True G453749
TU513685 lncRNA downstream 150013 89315119 ~ 89316158 (-) True mast2
TU513822 lncRNA downstream 168342 89295090 ~ 89297829 (-) True G453859
TU513947 lncRNA upstream 34016 89562234 ~ 89564862 (-) True G453963
TU513958 lncRNA upstream 49639 89577857 ~ 89579261 (-) True G453971
TU513969 lncRNA upstream 75923 89604141 ~ 89604396 (-) True G453981
TU513996 lncRNA upstream 89796 89618014 ~ 89622067 (-) True G454004
TU514014 lncRNA upstream 100575 89628793 ~ 89629394 (-) False prrx1b
XM_036978699.1 mRNA downstream 174 89151732 ~ 89465997 (-) False mast2
XM_036978708.1 mRNA downstream 174 89151732 ~ 89465997 (-) False mast2
XM_036978700.1 mRNA downstream 175 89151732 ~ 89465996 (-) False mast2
XM_036978720.1 mRNA upstream 100580 89628798 ~ 89639711 (-) False prrx1b
XM_036978722.1 mRNA upstream 100580 89628798 ~ 89639717 (-) False prrx1b
XM_036978721.1 mRNA upstream 102310 89630528 ~ 89639711 (-) False prrx1b
XM_021604674.2 mRNA upstream 116530 89644748 ~ 89647942 (-) False gorab
XM_021604673.2 mRNA upstream 116530 89644748 ~ 89649877 (-) False gorab
TU513891 other downstream 23794 89441584 ~ 89442377 (-) True G453915
TU513777 other downstream 229563 89234225 ~ 89236608 (-) False G453823
TU513778 other downstream 229563 89234916 ~ 89236608 (-) True G453823
TU513655 other downstream 311908 89151740 ~ 89154263 (-) False mast2
TU514429 other upstream 280817 89809035 ~ 89812305 (-) True trmt1l
TU514643 other upstream 617607 90145825 ~ 90146313 (-) True G454579
TU514974 other upstream 867629 90395847 ~ 90396236 (-) True G454875
TU515000 other upstream 914878 90443096 ~ 90443490 (-) True G454900
TU514982 other upstream 926463 90454681 ~ 90473614 (-) True G454882

Expression Profile