RNA id: XM_036978724.1



Basic Information


Item Value
RNA id XM_036978724.1
length 1102
RNA type mRNA
GC content 0.48
exon number 5
gene id gorab
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89644748 ~ 89649877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGTCTTTGACGTGGCATCAATAAGCAAAGATGGCGGCTAAGTAGAAAGTTTTCCTGGAATGTTACTTACTTTTGGCATTTTAAGTTGATGGTTTCGCTAAATATTTAATAGCTAACAAATATCTCGTGTCGCTAAATTCCTAGGATATCAATCTTAAAATGGCTGGGTGGTCAGGGTTTTCGGAAGAGGAGCTACGAAAGTTGCAGCAAAAAGACCAGGCGGTGCCTGCGGCTTTAGGTCGTGGACGGAAACCAGCTCCTACTAACCGGAGTCGGCAGCAGTTGCAGCGAGAGCGAGCCCTCCAGTTAGCCACTCAGCAGAAGAGTGGACCCGGCTCGTCTGCACTACCACCCGAGCAGCAGCTAACCAAGCCTCCGCCGCAGCCCACTAAGGCCCTGCCAAAGGCTGTCATTCAGCCCGTTGTCGCCCCCACAAAGCCGGTGGAGGAACCCAGCCAAAAAGAGACCCTTGCCGTAAACCATGCTCCTGCACCAGCAGAGGACACATCACCGATTGTCAAGGAGTTGGAAAAACAAGAGGTGGAATTTCGGGAGAAGACTCGCATAGAGCTGCTTCAGCAAGACCAAAAGATGATGGAAGAGAGGAATAAGCGCAAGAAAGCCCTCCTGACCAAGACCATCGCTGAGAAATCCAAACAGACCCAGGCAGAGTCAGTGAAGCTGAAGAGGATCCAGAAAGACTTGCAGACTCTGGACAATATGGTGTCCAACGACATCTGCATACTGAGAGGTGTGATAGAGCAGGCCAGCTGGGACTATAACACTGCAAGGTTATTCAGCATACTCCTTCAGTACATCCCAATACATTGATAAAACAATGTCCCCTCTCGGATATGAAAAAAGGATGGTGATATGTACATCCTAAACTTGAGAATAATGACGCTGGGCTGAAAAAATAACTATTTAAGGAGATAAAGGAATGAGTGGCCTGCACAAGGAATGTTGCTGCTCCACGGTGACTTTTTTTCTGAACCCAAATCAACAACGTTTCGACTTCACAGAATTCTTCGTCAGGTGAGGTAGGCCATGTATTCCTTCCTTTGCTATAAAACAAATTCCTAATACATCTGTCTCCTTTTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU514014 lncRNA downstream 17085 89628793 ~ 89629394 (-) False prrx1b
TU514015 lncRNA downstream 17173 89628965 ~ 89629306 (-) True prrx1b
TU513996 lncRNA downstream 24412 89618014 ~ 89622067 (-) True G454004
TU513969 lncRNA downstream 42083 89604141 ~ 89604396 (-) True G453981
TU513958 lncRNA downstream 67218 89577857 ~ 89579261 (-) True G453971
TU514371 lncRNA upstream 3534 89653411 ~ 89653649 (-) True G454327
TU514372 lncRNA upstream 3795 89653672 ~ 89653982 (-) True G454328
TU514375 lncRNA upstream 7100 89656977 ~ 89657185 (-) True G454331
TU514410 lncRNA upstream 64854 89714731 ~ 89714979 (-) True G454364
TU514411 lncRNA upstream 65323 89715200 ~ 89715442 (-) True G454365
XM_036978722.1 mRNA downstream 6762 89628798 ~ 89639717 (-) False prrx1b
XM_036978720.1 mRNA downstream 6768 89628798 ~ 89639711 (-) False prrx1b
XM_036978721.1 mRNA downstream 6768 89630528 ~ 89639711 (-) False prrx1b
XM_036978715.1 mRNA downstream 37828 89466171 ~ 89608651 (-) True pde4dip
XM_036978716.1 mRNA downstream 53735 89466171 ~ 89592744 (-) False pde4dip
XM_021604676.2 mRNA upstream 45666 89695543 ~ 89713827 (-) True mettl11b
XM_021604678.2 mRNA upstream 113412 89763289 ~ 89783494 (-) False niban1a
XM_021604677.2 mRNA upstream 113412 89763289 ~ 89791286 (-) True niban1a
XM_036978732.1 mRNA upstream 149077 89798954 ~ 89812313 (-) False trmt1l
XM_036978736.1 mRNA upstream 203663 89853540 ~ 89892734 (-) False ivns1abpa
TU513891 other downstream 204102 89441584 ~ 89442377 (-) True G453915
TU513777 other downstream 409871 89234225 ~ 89236608 (-) False G453823
TU513778 other downstream 409871 89234916 ~ 89236608 (-) True G453823
TU513655 other downstream 492216 89151740 ~ 89154263 (-) False mast2
TU514429 other upstream 159158 89809035 ~ 89812305 (-) True trmt1l
TU514643 other upstream 495948 90145825 ~ 90146313 (-) True G454579
TU514974 other upstream 745970 90395847 ~ 90396236 (-) True G454875
TU515000 other upstream 793219 90443096 ~ 90443490 (-) True G454900
TU514982 other upstream 804804 90454681 ~ 90473614 (-) True G454882

Expression Profile