RNA id: XM_021604677.2


Basic Information

Item Value
RNA id XM_021604677.2
length 4566
RNA type mRNA
GC content 0.50
exon number 14
gene id niban1a
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89763289 ~ 89791286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGGCATTGAATGACAgtcactgggagagagagggagagagaggcatctACACTGTGCGACGCAACGATCGATACGAGAGACTACACCGGAGTTAACCAACGTGCGCTAGTAGACCCTTGTCCACATCAACTCGTCACCATGGGGATATCACCGTCCAGTCTTCTGGATGAAAGTAAATCCAACTACATAAGAGGTTGTGCGGAGGCAGAGCTGAAGGAGTTCAGTCCCCACTACAGGAGACAGTACTCTGTGGTCTTCttctcccaagtccaggatgagCTGGAGCAACAGAAAGAGAAAATAAAACAGCTCCTCAAACAAAGGGGTCCTCCGAAGGCAGGGGAGGTGCTGTATGAGGAACAGGTCCTCCATTTTGATTATACCCGGAAGTGGAAGGAGAGATACATGGTGGTTCGCGCCAACTACTGCCTGGAGTGTCACGACAGCTTTGAGACCTTTGTGAAGGGCGTGCCCCCGCTCCACAAGCTGCTACCAACAGGAGGCACTGTGCTCACCACAGAGGAGAAGTACATGGCCATGGTGGACCAATGCTTCCCTGTTTCTGAAACCAACAatgtgaaggaggagttTGCCCCTCCTACAATCGGCATGCCTGGACAGTTCCCTGTGTACCTCAGGCTTCCGTACCGTAGAGATTACTACTTCTGCTTCCGACAGGAGGCTCGTCAAGATgctttcctctccatcctctctgacTGCATCCGTCACCAGAACCAAGacttcCTAAAGAAGAAGACGGTTGAGGTGCAGGCCTTCCTCAAGGCGGTCCACCTCTACAGACAAGAGAAGGGCCGTTATGACTCCTGGAACATGCTGATTGGCAGTGATGTCAGGgtactTGCCAACTTGGTTATGGAGGAGCTGTTGCCGTCTCTGGAGAAGGATATGCTGCCTCATCTGAAAGCCaagaagacagagaggaagagagtgtggTTCGCTACAATAGAAGCAGCTTATATCCTGGTGCAGGAGTGTCTGTTGGAGGGGCTGTCTGTTCTGAAGGAGGAGTGTAGGACGGCAGCTTGCCAGCAGGAGGTGCTGATACGTTCTGATATGGACTTGATCCTTCACTCTAGAACCTACCTGGAGGGAAAGCTTCGAGCCAGTGTATCAGAGCCAGCAGAGAAGTTCTGTTCGGAGGGCGTGCAGCCCTACCTGGCCTCCATACTGGAGGAGCTCATGGGACCAATCAGCTCAGGGTTCCAGGAGGCACGGCTCCTAAGTGACAACCAGATGGACCAACTGTGTCAGGACTTCCAGGAGGGCGGTGTTACCGACAAACTCAAGCAGGCCCTGGCTAAGCTGAGTAAGCCCAACCTGTTGAGTTGTTACCAGAGGATCAACTCTCTCCACGACCAGCAGCATGACCTGCAGGAACGTTTTGGCTTCTCCAACATCAGCAATCTGGTCCACAGCACCCAGATAGACCtgcagcagCTGATTGAAAACGCAGCGTACTCGTTTGAGCTGCTACTCTACAAGGCCAAAGAAAACAGCACAGACAATGTAGGCTCTGCCATGGAGAAGTCCAGGCACATGGTGCTCAAGcaatATGATTACGACAGCAGCACGGTGAGGAAGAGGATCTTTCAGGAGGCCTTGGTGGGGATCACTCTACCTCACATTAAGAAGAACCTGGCCCCAACCTGCAAATCAGATCTGCAGGGTCTTGAACAGTTCATTGATGCAGACTATTCCAACTTCGTCCATGTGGAGAATATCTATGAAGACATTCTGCTGCAGAGTCTGGGCAAGGAAGTCAGCAAAGTGGTGAAGGACGCAGCCAGCCTAAAGAAACACAACCTGTTCACAGACAGCAGGGACCCCCTGAGCCAGACCAGCCGCTCCAGTCTCCTCTCCATCCCATCCACCCCCAGCAGCCCAGCCAGGGTGCCGTTCTCCCCCACACATCTCCAGACCTCTACCTTTATCCAGACCCAGCCACAGGCTGAGGTACCAGCACCAGCCCAGCCTGTCTCTCCTGACCTGAGCAACGGTCTGGCGCTCGTTGGGGGTGCACAGGGGGACCCCCCAAGTGCCGTGTTGAAGGCAGAGCAGAACAAGGTGGAGGCGGTGTCAGGGGCCACAGTAGAGATTGAGGCCCTGGGGGCCAGTATTGCACCTGCTGTTGCAGCTCCAGTGGAGAAGCTAGTCAAGGTGGAGAACACAGTCAGTACACATGAGACAACTGTAGTGGCTGAGACAAAAACAGAGGACATGTCTGAACCAACTGAGACAGCTCAAGTGGATACCCCTGTCCTAACTGAGACAGAGAAAATGCCCACCCCTGGAGATGCTGTGGAGGTGGAGAAGACAGTAGTAACAGGCGTACTAACTACAGTAGCACAAAGCGAAGCCCCTTCTCCCAGTCcggtccctgaccctgtccctgtttGTGTTGTCAAGCCTGTAGCTGTCATTGACCTTATAGCTGTTGAAGACTCAGTAGCAGAGCACATGGCTTCACTCACAATCATCACTACTGAGACAGCGGCTGAGACAGAGGCTGAGAGTGAAAGCGGTCCTCCTAACAGTGACCCAGTAGCGGCCTCTAGTGGTGAGCAGCCTGTAACTGCGCCACCAGCAGACGCCAGCCTTGCTGCAGCAGCAGAGACCAAGGATGTGCCAGCCTCATCCTCCGCTATCCCAGATGATGGGGATGATACAGAGAGCGAGTCTGCCCCCTCCGACATCGGGATCCCTGGTGATGATGATGTCACGAGAGCAGCAGCCCCCACTGATAAGGTCAAAGTGTCACAGAGCAATGGAGTGGAGTGTAGCATTTCTGTGACCTCTAATCTTGCAGTAGAGGTCAGCGTGAGTGAAACACCAGTCGGTATCGCCACCAAGCCCCCTGTAGAAGTATCAGAGGGTAACCCCGTTCCCCCTAGCGACGCCCCGGTCTCTGAAGCAACAGGAGGCGTTAACGGAGAAGCTAGCGTTGAAGTCACTGCTGGTGCTTATTCCACCGTAGCATCAGCAACCAATTTGAATGTAGTCCCTCCACAGCCCCAGCCAGACTCCCAGGCCACCCTCGCTGCTGAACCCACCGAAGAAGCCCTCCAGGCTGTGGAGCCCACTGAGCCTGCTCCCCGGGCCGTGGACTGTGTGAAAGAGATCCGGGACCTGGTGGTGGCGGTGTTTGAAGTGGAGGAGGTAATCCAGCGCTACCCAGGTAGTGATAACATATGAGGGAGGGGTGGCCAGTGAGGTGCCTGATATCACACAGAGAATAAATGAAGACAAGGACCCTATTCTTTAAATCACTGCAATTGTGAGGAGTATGAAAATGTTAGACTATAACCTCGCCGTTGTCGTTACCCTCACCATCAAGTACAAACATTGAACTGTTGCACAAGCATAAAACTGCACGCTTCCATAACATCTCAGTGGTAAAATATGAATATATACAATTGTGTTTATGAGAAGATTAATGTAGTGAGATATGGGCATAAATAGAATATCATGTTAGGGACCAAGAAAAAGCCAATCAAATTGACTATTGCAATTGTGTGTAACTATCTCCACTTGTcattgtgtttaaaaaaataaatatcttcTATGTCCCTACATATGAATATGCATAGATTCAAGATGATTCAGTCACCGTTTATGTTATATTTTAAAGTCAACAGCACTGCCATATATTGAATGGGTCTGAGTAACAATGGGAGGGTTCTACATATGGAGGAAGATGTTCTATTCTGTGTGCTTTGACTTGAAGGATTTTTCTCATCAGTTAATATAGAGGGTTATGCATGCTCATACTCAATCACCAGCTAGTCCACCAAGATACCACTAAATGAGGTTATACAGTTCTTTCCTCGTGTCTACTGCATGCTCATACTCAATCACCAGCTAGTCCACCAAGATACAACTAGATGAGGTTCTATGGTTCTTTCCTCGTGTCTACTGCATGCTCATACTCAATCACCAGCTAGTCCACCAAGATACCACTAGATGAGGTTCTACGGTTCTTTCCTCATGTCTACTGCATGCTCATACTCAATCACCAGCTAGTCCACCAAGATACCACTAGATGAGGTTCTACGGTTCTTTCCTCGTGTCTACTGCATGCTCATTCTCAATCACCAGCTAGTCCACCAAGATACCACTAGATGAGGTTCTACGGTTCTTTCCTCGTGTCTACTGCATGCTCATACTCAATCACCAGCTAGTCCACCAAGATACCACTAGATGAGGTTCTACGGTTCTTTCCTCGTGTCTACTGCATGCTCATACTCAATCACCAGCTAGTCCACCAAGATACCACTAGATGAGGTTCTACGGTTCTTTCCTCGTGTCTACTGCCTTGTTTCCATGAAGAATGATTACCACCTATTTCCAATAGACGTGGTTGCTATGGAGACTGGTCCAGTGACTTTATTCCTGAATGACTAATAGCCGTGTTGAAACAGTGCCTGTGCTCTCAtacatgacatgttacacagtcaTTTTGTGAAGGGGCTATGCGGACTTGTGTATGTATATTCAAGTCTGaaaaatgtactgtaaaataaagtaTGAAGTCTACAAAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU514413 lncRNA downstream 46748 89716286 ~ 89716541 (-) True G454367
TU514412 lncRNA downstream 47310 89715619 ~ 89715979 (-) True G454366
TU514411 lncRNA downstream 47847 89715200 ~ 89715442 (-) True G454365
TU514410 lncRNA downstream 48310 89714731 ~ 89714979 (-) True G454364
TU514375 lncRNA downstream 106104 89656977 ~ 89657185 (-) True G454331
TU514451 lncRNA upstream 1192 89792478 ~ 89792732 (-) True G454402
TU514452 lncRNA upstream 1799 89793085 ~ 89793332 (-) True G454403
TU514484 lncRNA upstream 56026 89847312 ~ 89847413 (-) True G454434
TU514483 lncRNA upstream 57474 89848760 ~ 89849005 (-) True G454433
TU514488 lncRNA upstream 60851 89852137 ~ 89852529 (-) True G454438
XM_021604676.2 mRNA downstream 49462 89695543 ~ 89713827 (-) True mettl11b
XM_021604673.2 mRNA downstream 113412 89644748 ~ 89649877 (-) False gorab
XM_036978724.1 mRNA downstream 113412 89646479 ~ 89649877 (-) False gorab
XM_036978725.1 mRNA downstream 113412 89647003 ~ 89649877 (-) True gorab
XM_021604674.2 mRNA downstream 115347 89644748 ~ 89647942 (-) False gorab
XM_036978732.1 mRNA upstream 7668 89798954 ~ 89812313 (-) False trmt1l
XM_036978736.1 mRNA upstream 62254 89853540 ~ 89892734 (-) False ivns1abpa
XM_036978733.1 mRNA upstream 62254 89853540 ~ 89907753 (-) False ivns1abpa
XM_036978735.1 mRNA upstream 62254 89853540 ~ 89918839 (-) False ivns1abpa
XM_021604684.2 mRNA upstream 402380 90193666 ~ 90203568 (-) True arpc5b
TU513891 other downstream 320912 89441584 ~ 89442377 (-) True G453915
TU513777 other downstream 526681 89234225 ~ 89236608 (-) False G453823
TU513778 other downstream 526681 89234916 ~ 89236608 (-) True G453823
TU513655 other downstream 609026 89151740 ~ 89154263 (-) False mast2
TU514429 other upstream 17749 89809035 ~ 89812305 (-) True trmt1l
TU514643 other upstream 354539 90145825 ~ 90146313 (-) True G454579
TU514974 other upstream 604561 90395847 ~ 90396236 (-) True G454875
TU515000 other upstream 651810 90443096 ~ 90443490 (-) True G454900
TU514982 other upstream 663395 90454681 ~ 90473614 (-) True G454882

Expression Profile