RNA id: XM_036978733.1


Basic Information

Item Value
RNA id XM_036978733.1
length 3492
RNA type mRNA
GC content 0.52
exon number 14
gene id ivns1abpa
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89853540 ~ 89918839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGCGCTAGAGCAACCCAGACACTGCTCATTCAACTTGCCTGTGCTTCAGTCACATTGGAGAGCCAgagggacagagcgagagggaccTGAGAAAACTGAACCGTGCCAACTGCATCGTATTCGCTGTACCCACACAGACAACTCTGAATTTACATTAAATATGTCTATCACCATCTGCTGTCAAAAGCCCCAGgttaTAATGCACGACCAACACAGAAAAAGTTTGACTCTATAGCCAACGGGATCCTGAGGACTTGATTACAGTCGCTTCAAGCCTGATAGTTTGCATCGGTGCGGCTCCCCCCGGCTCACACCCCTCTGGACGACTGGCATtgcccccacccctcctcctctgctGGTAGAGAAGACTTGGGTTCCCTTGTGGTCTCTGTCTACTTTGCCTTTGTCTTCTCTCCCATCGTCCCCTGTTGGTCTACTGGTACCAGTAACAGTCCCCGGAGTTACGTCATTCTGTATTAGGCTCTGCCCCCAACATTAAGCAGTAAAGATGATTTCCAACGGTTATCTGATCTTTGAAGATGAGACTTTCCTGGATTCCACTGTGGCCAAAATGAACGCCCTGAGAAAGAGCGGACAGTTCTGTGACGTGCGACTGCAGGTGTGTGGTCATGAGTTGATGGCCCACCGTGCTGTGCTGGCCTGCTGTAGCCCCTATCTGTTTGAGATCTTCAACAGCGACATCGAGGCTCACGGCGTGTCCCACGTCACCTTCGAAGACCTGGACCCAGAGGCTGTGGAGATCCTGCTCAACTACGCCTACACTGCCCAGTTGAAGGCGGATAAGGCATTGGTTAAGGAGGTCTACTCTGCAGCCAAAAGGCTCAAGATGGAACGAGTCAAGCAGATCTGTGGCGACTACCTGCTGTCTAAGATGGATTCCCAGACCGCCATCTCCTTCCGTAACTTTGCAAGCTGCATGGGAGATGGCCGCATGCTGGCCAAGATCGACGCCTACATCCAGGAACACCTGCTGGAGGTCTCAGAGCAAGAGGACTTCCTCAAACTGCCCCGCCTCAAGTTAGAAGTAATGCTGGAAGACAGCCTGAGCCTGCCCAGCAACGGCAAGCTCTACAATAAGGTGCTCAACTGGGTCCAGCGCAGTTTGTGGGAGAACGGAGGTCAACTGGATAGACTGATGGAAGAGGTGCAAACGCTGTACTATTCAGCCGACCACAAGCTGCTCGATGGCGCTCTCATCATTGAGGAACATGGGGTGTTTGGTGTTGGTGCAGAGGACCACATCCAGTTTGTGCAGAAAAAGCCCCTTCGTGAGAACAGCAACACCCAGAGACAGCTGAGCTCCAGCTCCTCCGGCAGCACCTCGCCCCCCGGATCCTCCTCCAACACACCCTGCAGGAGAGAGTGGAAGTATATTGCCTCCGAGAAGACCACCAacaaCACTTACCTGTGTCTGGCCGTGCTGGATGGAGTGTTGTGTGTGATCTTCCTGCATGGCCGTAGCTCTCCCCAGAGCTCTCCCTCTGCCACACCCTGTCTGATGAAGAGCCTCAGCTTCGAGGCCCAGCCTGAGGAGCTGGAGGAACACCCGCTGACCACCATGCACTATGCCCGCTCTGGCCTGGGCACTGCCACCCTGCACGGCAGGCTCATCGCTGCAGGAGGGTATAACCGAGAGGAGTGCCTGAGGACGGTGGAGTGTTACGACCCCAAAGACGACCGCTGGACCTTCACCGCTCCCATGCGGACTCCCAGGGCTCGCTTCCAGATGGCAGTGCTTATGGGTCAGCTGTACGTGATGGGCGGCTCCAACGGCCACTCGGACGAGCTGAGCTGTGGGGAGACTTACGATCCGCACACTGACACATGGGCTCAGGTGCCAGAGCTCCGAACCAACCGCTGCAACGCAGGTGTCTGCTCATTGAACAACAAGCTGTTTGTGGTGGGAGGGTCGGACCCCTGTGGGCAGAAAGGCCTGAAGAACTGTGACGCTTTTGACCCTGTGACCAAGACCTGGAACAACTGTGCTCCCCTCAACATCAGGAGGCACCAGGCTGCGGTGTGTGAGCTAGATGGCTTCATGTACGTGATTGGAGGTGCTGAGTCGTGGAACTGCCTGAACACAGTGGAGCGTTACAACCCCGAGAACAACACCTGGACCCTGATCTCCCCCATGAACGTGGCCCGCAGGGGGGCTGGGGTGGCCGTCTACGCTGGGAAGCTTTTCGTGGTTGGTGGGTTTGATGGCTCCCATGCCCTGCGCTGTGTTGAGGTGTACGACCCAGCCCGCAATGAGTGGAGGATGCTCGGTAGCATGACCGTGGCACGCAGCAATGCGGGTGTAGCCGTGCTGGGTGATTTCATCTGTGCCATGGGCGGCTTCGACGGAAACAACTTCCTGAACACGCTGGAGGTTTACGACCCCGAGACGGATGAGTGGAGCGACTGCGCCGAtgccctctcctcctccgccTGAGGGTTAAGGGTCAGAGGTCAATTGGGGGGGGTACCTTTCCCAAACTAACAGGCTTAGTGACATAATCGTGTTTCGTGATGTTCCGTAGGTGAGTGGGAGGAAGGGGACAGGGGAACCATTTTGGCAGGGGGTCTTCGGTGAAGACTGgagtatttgggggggggggggggggttgccgaAAGCAACATTAAGCCTTTGCATACAATATTTTTCGTGCTGTATATATTTTCCTTTTTGTCTTAAGAATGCCAACATTTAATACACTTTTAGTGCAATTTAGTTTGTAGTTTTTGGAAGGTTGTATTGTTTTCTGAGAAGAAGCTACTGTTGTGATCATCTCAACACTACCTTGGACCTACTGGTCAGGATGGGTGATGGTACTGGAAAACTTTGGGTTGACTTGATTTAGAAGGTGATTCTGAATAGTTGTGTCCATTTTAAACTGTCATTTTAACTCCCACACACATTTAAAGATATGCAGTTTGAAGCCTTATTCAGAGAAAGAGGGTCACTCCCATCATGGCTTTGTCATTTAAACTAAAGCTGGATTTTGCTTTTCCAATCTTTAATGATGGCcttttttacatatttttataCACTGCTGATTTACCAATAGAAGAAGTAGCTGCCGCACATGACAACTGAGTCATCAAATGAAACCAGTGTCAGTTtagtaacaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaaccaaccATGCTTCTGTGCTTGTTCTAACCACGTATTTTGTTACTGCGTTTTGACTAATTCACTATTTGTAGAGATGCCGTTTTCTTTATTTCCTGTGTGGTGTTTTAAAAGGGGTTCAGACATTTGGCTTTTGACCTTTTCTGTTTTGAGTTTAGAAGGTCCTGTATCACATTTGTAACACGCTGATATTCCTTAACTAATAAACCATTTCAACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU514488 lncRNA downstream 1011 89852137 ~ 89852529 (-) True G454438
TU514483 lncRNA downstream 4535 89848760 ~ 89849005 (-) True G454433
TU514484 lncRNA downstream 6127 89847312 ~ 89847413 (-) True G454434
TU514452 lncRNA downstream 60208 89793085 ~ 89793332 (-) True G454403
TU514451 lncRNA downstream 60808 89792478 ~ 89792732 (-) True G454402
TU514501 lncRNA upstream 20326 89928079 ~ 89932987 (-) True G454450
TU514510 lncRNA upstream 33726 89941479 ~ 89941833 (-) True G454459
TU514523 lncRNA upstream 48230 89955983 ~ 89962297 (-) True G454472
TU514548 lncRNA upstream 103523 90011276 ~ 90020324 (-) True G454496
TU514560 lncRNA upstream 119605 90027358 ~ 90028381 (-) False G454506
XM_036978732.1 mRNA downstream 41227 89798954 ~ 89812313 (-) False trmt1l
XM_021604677.2 mRNA downstream 62254 89763289 ~ 89791286 (-) True niban1a
XM_021604678.2 mRNA downstream 70046 89763289 ~ 89783494 (-) False niban1a
XM_021604676.2 mRNA downstream 139713 89695543 ~ 89713827 (-) True mettl11b
XM_036978725.1 mRNA downstream 203663 89647003 ~ 89649877 (-) True gorab
XM_021604684.2 mRNA upstream 285913 90193666 ~ 90203568 (-) True arpc5b
XM_036978742.1 mRNA upstream 303329 90211082 ~ 90260742 (-) False pla2g4ab
XM_021604685.2 mRNA upstream 303329 90211082 ~ 90261823 (-) False pla2g4ab
XM_021604687.2 mRNA upstream 303329 90211082 ~ 90261824 (-) False pla2g4ab
XM_021604693.2 mRNA upstream 422075 90329828 ~ 90332933 (-) True LOC110524783
TU514429 other downstream 41235 89809035 ~ 89812305 (-) True trmt1l
TU513891 other downstream 411163 89441584 ~ 89442377 (-) True G453915
TU513777 other downstream 616932 89234225 ~ 89236608 (-) False G453823
TU513778 other downstream 616932 89234916 ~ 89236608 (-) True G453823
TU513656 other downstream 699277 89151740 ~ 89154263 (-) False mast2
TU514643 other upstream 238072 90145825 ~ 90146313 (-) True G454579
TU514974 other upstream 488094 90395847 ~ 90396236 (-) True G454875
TU515000 other upstream 535343 90443096 ~ 90443490 (-) True G454900
TU514982 other upstream 546928 90454681 ~ 90473614 (-) True G454882
TU515713 other upstream 978319 90886072 ~ 90902401 (-) True LOC110524787

Expression Profile