RNA id: XM_021604687.2


Basic Information

Item Value
RNA id XM_021604687.2
length 4706
RNA type mRNA
GC content 0.47
exon number 18
gene id pla2g4ab
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90211082 ~ 90272430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGGAAATAGGGTTGTACTTGTAGAAATGATTGCGTACATACGTCGCATACCAAAAGTTCACATTACAAATGTTTTTAGTCGTATGTACGGGATAGACATGGTAtccaacaaaatgcttacttgcaggttccctCTGCACAATGCAAcaataataaaagataagaatacgaaGATAAAGTAAATGACTCAGTAGAAAAGAAATTGAAACATCCCCAGGTTGCATCATACTTCTCTCAGGGATTTTCTCAAGTCTTCCAACTCTCATGGGCAGCCTTTGAGGTCAGATAAGTAGCGAACAATGTCTCTGATACAACCCATGCGCCAAATTTCAGTTTTCGATTAGTCTCCCCATAAATTCTGACTTCCTAAATTACCAAAGCTTAAAATTGAGTTCCGCTACGAGGTGTGTACGTTTTTCGAGAGGCGGTGTTTAGCACCTCCTCCGGCTCATCGTATACCGTATACAGTGGAGCCATACTTCAGGCGTTGATGACATATTTCCTAGGATTTATGCGCTGATATTGTTCTCAAGTCTGTAGATTCTACCCAGTGTTCCTGGAGGATCTGCTTAAGTTCAAGGACACATTTGGAGACTGGACAGAGACTCTCCTCCTACAGTAGCTGACACCAACTCTCCCACCAGCCAACCATGTCTTCCATAGACCCCTACCAGTACATTATTGTGGAGCAGCAGTTCTCTCACAAGTTCAGAGTGACGGTGGTGCGAGCTGAGAATGTCACCAAGGGAGCACTGGGTGACCTGTtGGACACTCCTGACCCCTATGTGGAGCTGTTCATCCCAACTTCCCCCGAGAGCAGGAAACGAACGCGCCACATAGACAACGACATCAACCCTGAATGGAACGAAACCTTTGGCTTCATACTAGACCCAAACCAGGAGAACTTTCTAGAGATAACGTTAATGGATGCCAATTACGTGATGGATGAGAAACTTGGGACTGCGTCGTACAACATCTCCAAAATGTTGAAAACTGGTCAGACGGAGACGGTGCCTTTTCTTATCGGCAaaGCAACCAATGTGTACTTAGAGATGGCTCTGGAGGTCTGTACTAACTTGGACCTGCGGTTCAGCCTGGCCCTGTGTGACAAGGAGAAACTGTTCAGACAGGCCCGCAGAGAGAAGGTGACGTTGGGCATCAAGAAGCTGCTAGACATGGAGAAGCCTCGCTTCCTCCCCAGCACCCCTCAGGAGgTGCCGGTGATAGCCATAGTGGGTTCAGGGGGAGGCTTCAGGGCCATGGTGGggttctctggggtgatgaagGCCCTGTATGAGTCTGGGGTCCTGGACTGTGCCACCTACATCGCTGGCCTCTCTGGATCCACATGGTACATGTCAACCCTGTTCTCCCACCCAGAGTTCCCCTCTAAGGGGCCCAAGGAGATCAATGCAGAGCTGATGAAGAGTGTGAGCAGTAACCCTCTGAGACTACTGCTGCCCCAGCATATCACCAACTACATCCAGGCTCTGTGGAGCAAGAAGGCCAACGGACAGCCCGTCACCTTCACAGACATCTTCGGCATGCTCATCGGAGAGACACTCATTCCTGCGAGAATGGACACAAAGCTGAGTGAGTTGCATGAGAAGGTAAACGAGGCCCAGTGTCCCCTCCCTCTGTTCACCTGTCTGCACGTCAAACCGGACGTATCCGAGCTCATGTTTGCAGACTGGGTGGAGTTCAGCCCATATGAGATTGGAATGGCAAAGTACGGAACGTTCATGACCCCTGACCTTTTTGGAAGCAAATTCTTCATGGGAACCGCTGTGAAGCGGTATGAGGAGAACCCACTACATTTCCTTATGGGGGTGTGGGGCAGTGCCTTCTCCATTCTCTTCAACAGAGTTCTGGGGGTGAAAGACACAGTCGGGGGGAGCACCATGGAGGAAGAGCTTGAACAGATAAAACCTCAACACATCGTGGGGGAGGAGAGCATGGACAATGACGAGGAGCCTCGGAAAGGCAGTGAGAACCCGGATGATGAGTACCACCGCACCGCCCAGAACAGCTGGGTCCAGCGAATGATCACCTCCCTCTTCAGCGACTCCTCCCTGTTCAACACACGGGAGGGGCGGGCGGGGAAGGTCCATAACTTCATGCTGGGCCTCAACCTCAACACCAACATGCCCTTCTCCACCTTCGGAGACTTCATGTACCAGAACTCCTGTGCCTCCGTCGAGGATGAGGTGGACGCTGTCACAGACCCCGATGAGTTTGCTGATATCTACGAGCCCCTGGACGTGAAGAGTAAGAAGATCCATATAGTAGACAGTGGTTTGACCTATAACCTCCCGTACCCCCTCATCCTGCGGCCGCAGCGTGGCGTCGACCTCATCATCTCCTTCGACTTCTCAGCTCGCCCCAGCGACTCCAGCCCGCCCTTCAAGGAGCTTCTGCTGGCTGAGAAGTGGGCCCGGATGAACAAACTGCCGTTCCCTAAGATCGACCCTAAAGTGTTTGACCGCGAGGGCCTGAAAGAGTGCTACGTCTTCAAGCCAAAAAAGGGGGAACGGAACTGCCCCACTGTCATCCATTTTGTCCTGGTCAACATCAACTTCAGGACATTCAAAGCCCCtgGAGTTCCTCGGGAGACGGAAAAGGAGAAGGAGATGGCTGACTTTGACATCTTCGACGACCCTGAGACGCCGTACTCCACGTTCAACTTCCAGTACTCCAACCAGGCCTTCACACAGCTCCACGACCTCATGGAGTTCAACACGCTCAACAACATCGAGGTGATAAAAGAGGCCATTAAGGAGAGCATCGTGTACAGGAAGGAGAATCCATCCCGCTGCTCCGTGTCCCTCTCACTCAACGAGATCCAGAACAAAATGTTCCTGAAGCGGGAGACGCGGGAGAAACCCCGGAAGTGAGAGCCGGAATGCCGGGAAGAGCAAGGTCAAGCTATCAGACGAAACTGGCATTGGAAAGTGGAATTTTCCTATATTTTTACGTTTTTCATTAGGGAAACTTTGTTGGTTTGTTTTGTCCATCTAATGTGAATGAAGAGGGTTTGGTGTAAACCATGGAAACCTGTGGTGGATATCACTGAACAACATGACAAAGACTTGTTATGGACCCTAAAGTTGAGTGATATAAAGTCTGAAGAGATGTTAAAATAGCAGTAAACTAAACTCAAGGCTCCTTAATTGACTTTCCATTTTTATAAGTGCTACTCATGGATGTATTATGTGTTTTTAATGTAGCAGGGTTTTCCTACAGTATAGTTGTAAACAGTTGTTACTGATCTAAACAAGTGATCTCAcaggaaaccatggaaaccatagAAGAAGAGGCGTCCTTAAACCATCAGGTTGTGTTCGATGCCAACTACTAAAACACCGCCAAGTGCAACCGTCTGGATTCCTCAAACATCTCAATTATGTTTATTCAACGCAGGGAGTGGCTCCAACAACAAACAACACTCAACACCATAGAAACGGCCTTTCTGTCTGCCTCCTTTATAGTCCTCTCTCACGTTAGTGTGTTTATTTTCCTGACTGTGTTATTTCAGGCTTCCCCTTACATACTCGGACCAAGTTTTTTGTTTGGGGCAGAGTAATTTCCTCCCACTGTGacccctcctcacccccaccATCTTCCCATACTCTACCCCGCAGATATGGTCTGGTGTGTCTGTGCTGAGGTGGGGTGAGAGGGGTGGGGTGTAACCCTGGAGAGGGTGTGGTGTGATGGCTTCACGGCTCTTGTCGGCACACAATGGAATTTCAAACACTACACCTACACCTGCAGCAGCGTCTGAGAGAAGTATCTGACATACTACACCTACACTCGCAGGGGTCAAAGGGTATCCAGTGTGCTGTGGAATTTTACACAGAACAGAAACCCCTGTCTGCTGACCATGGTCTGCCTGAGCTCACATTTCAGCCTAGTTTTTAAAACAATGTTATGTAAAACAGGTGATTTTCTTCAATTATTTCTAGCTGGCAACTTGTTGCTTTGTGTGTTTTTACTGTGTATTTTCTTTTGTGCAAATGAATATTTCTGCATTCTTTGATGCTTTAACCTTATTGTTTATTACTTTtaggtcacaggaggttggtggcaccttaattggggaggacaggctcgtgataatggctggagtggaacggtatcaaatacatcaaacacatggtttccattggttccatggtttccatggtttccatgtgtttgatgccattccatttgctcggTTCTATCCATTATTaagagccgtcctcccctcagcagccaccACTGCTTTAGGTCTCCCAGAGATTGTCATATTGTTGTTGGCTATTTTCAGACTGAATTGCATTTCATACTGAACTTTGTGCAACGTCGCACAAGCAATGACAGTCACACCGCTTGATCTTTTCAGGACACCTGTGTGGCACCTTTTTATTCAATGGATTTGATTCTCTTAGGTAGAATGAGTACATGGAGAGTAGGACGTGTCTTTTTTTTCATGTAAAGCTGTCTTGGACTACAGTAAATagtctttttttgttttttgttttttttgtgcaaTTATTACAATTATGGGAAATAAAGTGTTAAAATGATTTCAAACTGAGAGGACCCAAGTAGTGTAGTCATACACTTCTGCTTTCCTTTTTACTATTTGAACCAATAACATACACCATGTTTATGTACATGTCATTGAATAAAAGTCCAAGTTGTCTTCTTTCTCAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU514663 lncRNA downstream 6947 90203903 ~ 90204135 (-) True G454598
TU514649 lncRNA downstream 17613 90192111 ~ 90193469 (-) True G454584
TU514661 lncRNA downstream 22228 90188366 ~ 90188854 (-) True G454596
TU514660 lncRNA downstream 22895 90187714 ~ 90188187 (-) True G454595
TU514651 lncRNA downstream 23617 90178901 ~ 90187465 (-) True G454586
TU514698 lncRNA upstream 17848 90279672 ~ 90280207 (-) True G454631
TU514708 lncRNA upstream 25228 90287052 ~ 90287267 (-) True G454641
TU514721 lncRNA upstream 39338 90301162 ~ 90301379 (-) True G454653
TU514973 lncRNA upstream 130843 90392667 ~ 90392961 (-) True G454874
TU514976 lncRNA upstream 135517 90397341 ~ 90397859 (-) True G454877
XM_021604684.2 mRNA downstream 7514 90193666 ~ 90203568 (-) True arpc5b
XM_036978735.1 mRNA downstream 292243 89853540 ~ 89918839 (-) False ivns1abpa
XM_036978733.1 mRNA downstream 303329 89853540 ~ 89907753 (-) False ivns1abpa
XM_036978736.1 mRNA downstream 318348 89853540 ~ 89892734 (-) False ivns1abpa
XM_036978732.1 mRNA downstream 398769 89798954 ~ 89812313 (-) False trmt1l
XM_021604693.2 mRNA upstream 68004 90329828 ~ 90332933 (-) True LOC110524783
XM_036979079.1 mRNA upstream 70888 90332712 ~ 90335328 (-) True LOC118936343
XM_036978744.1 mRNA upstream 102417 90364241 ~ 90384094 (-) True b3galt2
XM_036978750.1 mRNA upstream 556963 90818787 ~ 90902390 (-) False LOC110524787
XM_036978749.1 mRNA upstream 556963 90818787 ~ 90902393 (-) False LOC110524787
TU514643 other downstream 64769 90145825 ~ 90146313 (-) True G454579
TU514429 other downstream 398777 89809035 ~ 89812305 (-) True trmt1l
TU513891 other downstream 768705 89441584 ~ 89442377 (-) True G453915
TU513777 other downstream 974474 89234225 ~ 89236608 (-) False G453823
TU514974 other upstream 134023 90395847 ~ 90396236 (-) True G454875
TU515000 other upstream 181272 90443096 ~ 90443490 (-) True G454900
TU514982 other upstream 192857 90454681 ~ 90473614 (-) True G454882
TU515713 other upstream 624248 90886072 ~ 90902401 (-) True LOC110524787
TU515863 other upstream 795633 91057457 ~ 91060985 (-) True G455630

Expression Profile