RNA id: XM_036978744.1


Basic Information

Item Value
RNA id XM_036978744.1
length 3175
RNA type mRNA
GC content 0.52
exon number 2
gene id b3galt2
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90364241 ~ 90384094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcctccATACTACAGCGGCTGATTCTCCTCCTGCTGCAAAACAACGaagcagagcagagaggacaggacaggagctggacagagagagggagagagaaagtaaaaggaagagagagggaggagtgtttTCTTCCTCGAGACTCAGGATCATGTTCTTCTGCAGCCATTTTCAGAAACCATgagtgctccctccctctctgtctctctccgtcagaCTGCCTAGCAACATGCGGGACTAGCCACAGCACTATCAACACAGCTCTGCTGTCTCTTACTGCTTTCTTTTAGCGGAGCATCCTGAGAAGAAGACATGCACACCGGAGCAGAGAACGCAAGGTGAAGGATTCCGTTTTATTTTCGGACACATTGCAAAAGGgaagtggggagaggaagagagacagagcgagagagagagagagaccattggaGAGATAGGAAAAAAGAGAGGGGGGCTTTAGTGCATAACTGAGACCAAGGATCaagaagaggaaaggggaggaggaagagaggagagaaagagcccTAAACCCGAAAGGCTTGGTGacgcagaggaagagaggagatgacGGAGACTCTGGAATGCACTGTGACAGATGGACGGATGTTACGCCAACAATAATCCATTAGGCAGACAGGGTGGAAGAGTACATTACCCCAGATTCCAGAGAAGAGGGACAGTGATGGCGTACCGAGTGTGCCGACAGACGGCACCAGCAATCACACAGTCCGTCTGCCAGCTGCAGGAGGAGATAAGAGAGGTGATCCACTGAGGAGGTGACTCCAATCTCTGATCTGAAGGAGCCCAGACCTGGAGCATGATCCTGGGTGTGTCTGCAGAGTCAGTGAAGAGCCTGGGTCCTGCCTCCATGGCCACAAAGTCAGCACTGTCCTAGCTCTGCCACGGGACCCaagcatcccactgctggctccGCGAGGGGCCTCAAGTATCCCCTTGCTAGCTCTGCCAGGAGGCCTTGTACAGTACATCCCGTACTAGCTCTGCCAGGAGGTTCACTCCCACGTGTCTGCCAGCTCAGATAACCCTCTGGCTATTGGCAAACACATGTTTGACGTGATCGAATGTGACCGCCGCCGTGCCATCCAGAGCAGCAGCAGCCCCCTGTTCCCTCCGCCTGCCGATTCACCATGCAGTGGAGACGTTGGCACTACTGCCCCATCAAGATGACCTGGACCGTGAAGCGCTCGCTCTTCCGGACCCACGTGGCGGGCCTCCTGTCCCTGGCCCTCCTCTTCACACTCTTCCTTTTTTTCAGCCACCAGGACTGGCTGCCGGGCCGGACCGGGCCCCGGGACAACCCCCTGGCCTACACCGTCAGGGGCTTCCGCACGGCCAGGGCCGAAGCAAACCAGAGCCTGAGTCTGCGGAGCCTGTGGAAGGAGACGGGCTACGTGCCTCCCAAGccccatctcaacatcagctcCCAGCAGGCTgagggtggaggtggtggaggagccATGATGGGCGTGACGGGACTGGAGAACTCAATGAGTGCCAACAACAGTTTACAGCAGGAAATGGGCGTGGGAGGGAGGCTCAATGCCCAGCCCTATCGCTACATCCTCAACCAGCCCTTCAAGTGTAGAGACAGAACCCCATTCCTGGTGCTGCTTATCGCTGCAGAGCCAGGCCAGGCAGATGCCAGGAATGCCATCCGGCAGACATGGGGCAACGAGAGCGTGGCCATGGGCCTGACCTTCGTCCGACTCTTCCTGCTGGGTTTGGGGCGTAGCTCAGACTCTTACACCCAGACAGCCATCGAGGAGGAGAGCCGGGTCCACAATGACATCATCCAGCAGGACTACCAGGACACATACTACAACCTCACCATCAAAACCCTGATGGGCATTAACTGGGTGGCCAGCCACTGCCCCCAAGCGCGCTATGTCATGAAGACTGACAGTGACATGTTTGTCAACACGGAGTATCTCATCCAGAAGCTGCTGAAGCCAGAGCTCCCGCCCAGACAGAGCTATTTCACTGGCTATCTGATGAGGGGCTACGCGCCCAACCGAAACAAGGACAGCAAGTGGTACATGCCTCCTGAGCTGTACCCTAGTGAGAGGTACCCCATCTTCTGCTCGGGGACAGGGTACGTGTTCTCCGGAGACATGGCGGAGAGGATCTACCAGGCATCTCTGAGCATACGGAGGCTGCACCTGGAGGACGTTTACGTTGGCATCTGCCTGGCCAAGCTGCGCATCGACCCCACGCCGCCGCCCAATGAGTTCCTCTTCAACCACTGGAGGGTATCCTACTCCAGCTGTAAGTACAGCCACCTCATCACCTCCCACCAGTTCCAGCCCAATGAACTGGTGAAATACTGGAACCACCTGCAGAGCAACAAGCACAACGCCTGCATCAACATGGCCAAGGAGAAGAATGGGAAGTATAGACACAGGAAGTACCACGCAGAGAGACCTCAGTGAGGATCCCTCTACTTCATGTGGAAAGGGTATGGACAGGAAGAGGAAATGGCAAGGAAGTGGACTAGAGGAAGGGCTGGGTCTTGAAAGGGCATGTAAAAGAGAGCTCAGCACTATACACTACCTGGGAAAGAGCACTGTGTTTTTGGTATTGTGTACGGTCgattaaaacaattttttttatttgagagAGATGTTATGTATTGTAAACCTGTTGAAAACTCTTTTAAAAAAAGGGGCAGTGAAGTGTTTATGTGCAATATGAAGCATGCACAACGCGAAAGAGAGAAGGCTAGTGGTTGATGGGGTTTTGTTGTGCAACAGATAGTTCACTTTAACTGTTGGGCCAAATCTATCAAAGACCTAATTAATGACATAAAGAGTATTTACATGGGATGGGAAAGGGGGAAGACAGAAATCTATCACGTTACTAATAACTACTACCTACAAAATAATAATGAATATATTTATGATGTGGCCATGTAATGCTGCCCTTTTTTTCAATGTTTACTTTACAGAATGATCATCAAATACGAATTAAAAGGGGTTACCTGTCaatatgccatatattttgtATTTACAACCAAGGTGAAAGCACTCAGAATCAGAACTGTCGGAAATGACTGAGATTGTATTTTCTAAAGCTTTACATGAGTAAATATGGGGAGTCTGCACTTCAGTAAATGTGTAATGAATTAAATAACAATTAAATGTATTCCATTCTTGAG

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
K07820 B3GALT2; beta-1,3-galactosyltransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU514721 lncRNA downstream 62862 90301162 ~ 90301379 (-) True G454653
TU514708 lncRNA downstream 76974 90287052 ~ 90287267 (-) True G454641
TU514698 lncRNA downstream 84034 90279672 ~ 90280207 (-) True G454631
TU514648 lncRNA downstream 91811 90211233 ~ 90272430 (-) True pla2g4ab
TU514663 lncRNA downstream 160106 90203903 ~ 90204135 (-) True G454598
TU514973 lncRNA upstream 8573 90392667 ~ 90392961 (-) True G454874
TU514976 lncRNA upstream 13247 90397341 ~ 90397859 (-) True G454877
TU514980 lncRNA upstream 20739 90404833 ~ 90405070 (-) True G454881
TU514990 lncRNA upstream 30209 90414303 ~ 90414509 (-) True G454890
TU514914 lncRNA upstream 44702 90428796 ~ 90429232 (-) True G454824
XM_036979079.1 mRNA downstream 28913 90332712 ~ 90335328 (-) True LOC118936343
XM_021604693.2 mRNA downstream 31308 90329828 ~ 90332933 (-) True LOC110524783
XM_021604687.2 mRNA downstream 102417 90211082 ~ 90261824 (-) False pla2g4ab
XM_021604685.2 mRNA downstream 102418 90211082 ~ 90261823 (-) False pla2g4ab
XM_036978742.1 mRNA downstream 103499 90211082 ~ 90260742 (-) False pla2g4ab
XM_036978750.1 mRNA upstream 434693 90818787 ~ 90902390 (-) False LOC110524787
XM_036978749.1 mRNA upstream 434693 90818787 ~ 90902393 (-) False LOC110524787
XM_036978752.1 mRNA upstream 434693 90818787 ~ 90902393 (-) False LOC110524787
XM_036978753.1 mRNA upstream 434693 90818787 ~ 90902394 (-) False LOC110524787
XM_036978751.1 mRNA upstream 434693 90818787 ~ 90902395 (-) False LOC110524787
TU514643 other downstream 217928 90145825 ~ 90146313 (-) True G454579
TU514429 other downstream 551936 89809035 ~ 89812305 (-) True trmt1l
TU513891 other downstream 921864 89441584 ~ 89442377 (-) True G453915
TU513777 other downstream 1127633 89234225 ~ 89236608 (-) False G453823
TU514974 other upstream 11753 90395847 ~ 90396236 (-) True G454875
TU515000 other upstream 59002 90443096 ~ 90443490 (-) True G454900
TU514982 other upstream 70587 90454681 ~ 90473614 (-) True G454882
TU515713 other upstream 501978 90886072 ~ 90902401 (-) True LOC110524787
TU515863 other upstream 673363 91057457 ~ 91060985 (-) True G455630

Expression Profile