RNA id: XM_036978756.1



Basic Information


Item Value
RNA id XM_036978756.1
length 1037
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110524789
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90912429 ~ 90932261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCAGTCCCTCTGGACAGTGGTTCTCTTCAGTGCTCCCTGGGGGCTGGAACTCTGTAGACAAACATTAACTTTGGGGTAGACACTCTATATTTATGTTCTACTCCTTCCATTTTTACTGCATCTACCATTTGATCAACATGAAATCATCTCTGACTCTGCTGTGTCTGGTGGTATGGGTGAATGTGGATGCTTCATCAGCTCAGACTGAGTACTGTGGTAAGCCTGAGGGTGAAGGGAGGAGAATGCTGCCGATTCCTAATCAAGAACGTTATGAAAATGGGGACCAAGTGGAGTATGGATGTCTTGCAACTTGTAAGAACGGAGAGTGGGATAAGACCATCAAGGGCAAAGATTACTGTAGTAAACCTGAGGGTGCAGACACCAGAATGCTGCTGATTCCTGACCGAGAGAGATATGAAAATGGGGACAAAATAGATTATGGATGCCTTAGCGGCCCAAACAAAGGCTCAAGAGGAAAAGCAACTTGCAAGAACGGAGAGTGGAGTAAGACAATCGAGTGTCAAGCAGCATTTGCTAAATGTGCATTGTCATTGCCACCAACAAGAGGAACCAGTTACACACCTGCTGACAGAAATCTGTTCTTGCCTGATGAAAGTGTAACGGTGACCTGTGCCTCAGGATTCTGGAACTCTTTCTCACGTCAGACTGAAAATACAATGACATGCAAAGAGGACGGAAAGTGGTCATCTTCTACAGATTGTGAACCAAGCTGTCCTGATCCTCCTCCCATTACTAATGGAGATTTCACCAAGGAAAAGAGAGATGTTGAAGGTGTAATTACAGAGGTGTCCTACCAATGCAGCAGACAGTTTACACTGAGTTTCACAGGCAGCATCAGATGTCTGGATGGAAAATGGCCGAGCCCTCCAAAGTGTTTACAGTACTGTGGTAAGCCTGAGGGCGCAGGGAGGAGAATGGAGATTCCTGACCAGTGCTGGAGAGATACGAAAATGGATCCAAATAGACTATACATGCATTAACCCATACAAAGGCCCCGGAGGAACAGCAACTTGCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU515798 lncRNA downstream 15815 90865026 ~ 90896614 (-) True G455572
TU515700 lncRNA downstream 61696 90848375 ~ 90850733 (-) False LOC110524787
TU515728 lncRNA downstream 97531 90783609 ~ 90814898 (-) True G455512
TU515735 lncRNA downstream 99275 90807414 ~ 90813154 (-) True G455519
TU515738 lncRNA downstream 112189 90796638 ~ 90800240 (-) True G455522
TU515803 lncRNA upstream 4344 90936605 ~ 90936978 (-) True G455576
TU515805 lncRNA upstream 13152 90945413 ~ 90946435 (-) True G455578
TU515734 lncRNA upstream 14371 90946632 ~ 90947365 (-) True G455518
TU515732 lncRNA upstream 16196 90948457 ~ 90959594 (-) True G455516
TU515808 lncRNA upstream 18259 90950520 ~ 90954013 (-) True G455580
XM_036978751.1 mRNA downstream 10034 90818787 ~ 90902395 (-) False LOC110524787
XM_036978753.1 mRNA downstream 10035 90818787 ~ 90902394 (-) False LOC110524787
XM_036978749.1 mRNA downstream 10036 90818787 ~ 90902393 (-) False LOC110524787
XM_036978752.1 mRNA downstream 10036 90818787 ~ 90902393 (-) False LOC110524787
XM_036978750.1 mRNA downstream 10039 90818787 ~ 90902390 (-) False LOC110524787
XM_036978745.1 mRNA upstream 46928 90979189 ~ 91003632 (-) False aspm
XM_036978746.1 mRNA upstream 46928 90979189 ~ 91003632 (-) False aspm
XM_036978748.1 mRNA upstream 46928 90979189 ~ 91003632 (-) False aspm
XR_005051894.1 mRNA upstream 173539 91105800 ~ 91109094 (-) True LOC118964688
XM_036978764.1 mRNA upstream 199347 91131608 ~ 91220909 (-) False LOC110524793
TU515713 other downstream 10028 90886072 ~ 90902401 (-) True LOC110524787
TU514982 other downstream 438815 90454681 ~ 90473614 (-) True G454882
TU515000 other downstream 468939 90443096 ~ 90443490 (-) True G454900
TU514974 other downstream 516193 90395847 ~ 90396236 (-) True G454875
TU514643 other downstream 766116 90145825 ~ 90146313 (-) True G454579
TU515863 other upstream 125196 91057457 ~ 91060985 (-) True G455630
TU515828 other upstream 141735 91073996 ~ 91074763 (-) True G455600
TU515886 other upstream 162448 91094709 ~ 91096335 (-) True G455649
TU515974 other upstream 324846 91257107 ~ 91258984 (-) True G455713
TU516686 other upstream 964375 91896636 ~ 91914788 (-) True G456288

Expression Profile