RNA id: XR_005051894.1


Basic Information

Item Value
RNA id XR_005051894.1
length 3210
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC118964688
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91105800 ~ 91109094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTAACATAGCCTAGATTACAGCGGGTGTCACTCCTGAACACTaacattcgcacacacacacacacacagtgactgcCTGTCCTTAATCTATTATGGTCAGTCCAGCGCAGAGGGAGCACAGTAAAGTACAAGCAGCCCGCAGCGAGCAGAGCCAAAATAAAAAGCCAAATACCTCTAAAACGGTGAGGGGTTTTAACAGGCACAAAGGCACGCACGGCCGGGTGCAGCAGCAATGCCAGGATTTATAGAACGCTGGGGCAGTAAACGGGACTCGGAAGCATCAGCGGAGCCTTCCGGAACGGGTGTTTTTACAAACTGTAACTATTGGAAACAAATGCTGTGTTAAAGAGGTTGAAAAGAAACATGATCCACAGAGTCTCCACCCCCCAACACAGCTGGTTTCACTTCCTGGGGGAGACTTTACTCACGCCACCCCCACTTCCTGTTGATCAGTCAGGAGAGAGGCTGTAAATCTTCGATGAGGACATCATTGATGTTTGGGATGTGGTTTTCTGTTTGGCTTTTGATGGAGGTAACTTCAGCAATACGGATTGAATCAAGCCCCTTACTGTAATAGGCTTTTTGACAAATCAGGATAAAATGgtctggtgggtcctgtggcgATGGTTATTACCATCAGGCAGTTTTACAGCCTTCTAAGCCTCACATATTTCAGCCTGTACGCCAGACTTCCTAAAGGATCTCCTTCACTGTCACATGTGTCTGGGTCTAGTAAAATAAGCACTCAGCTCGTAAACCGGCCAATGAGCAGACCCCAAATAGCCACTTCTGCCAGCCTGACTGACAGAAGCCCTAAAGAGACGTGTTCAAAGATGGAGGGAAGCTAGTCACATGGAGATTGAGGAGGCAGTCAATCAAAGAGAATGGCTACATCTACCAGAAACATTGACTGCAATGTGCTTCTGTTGTCTTCTTGTCCTCCTCTGAGGAAACAacagctttttgttgttgttgtcagccTCATGTTGAAGTTTATTTTCTCTGACTATATTTCTAAAAGGCACAACAAACCTGCTGCGTTCTCCGACTACCTACTTTCCTACTTTAGTACCCCATCtcccagcgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgcgcgcacacccTGTCTCCTGCGGTCTGCGTGCTGTAACGCTGTTCTGGTCTCCAGTAAATCCAAACCACTACCAGGTGTACACACAGAGCCTAGGCTGAGCTGAGCATACGGCCACagctgctctgtctgtgtgtagttctgtgtttgtgtatgcatgtgtgagtAGAATGAAGTTGTCATTAGCCGCTGATCTAAAGTCAGATTTTTACATTTTTCACCCTGATGCTAAAAAAacgtaagctgatcctagatctgtacttaAGGGGCAACCCGTAGTGATTTATAGAGCTGCCACCGCATCATAGACATTCTTGTGTAGAGCCGTGCCCCGGTACAGCGGACCAGAGCTCTGTGTGCCAAACGACGCTACGTTCCCAGCTTCCTCTATTCCCACGCTTTCCTCTGTACTGCCAACTGGGAACATACATACCTCCCCGTTCACATCATTATGAGAATAAtagtccaactctctctctctctcatgatttCTTGATGTGCAGTAGGCCTACTTAATGTAAAACGTGTGGTGTACTGTTACTATATGTTAGTTAAAGAAAGTATACTCTCGTTACATTGTCCGTCCATCATTTGGGTTAGCCAGTCGGGTTAACAACTGTTATGAGAATATAAGATGGTGAATACAGTAGGTAAGAGGTACGAGGTAGGGAGTTCTACTCTCCTGTCCTTGACCGTTATCAGAGCTGAAGGGATATCAAAGCACACATTCTTCAGCAGAGAGACTGAAAACACTTTGAGACACTTTGAAACACTCCTGTCCAAAAGGCTCAGAGCAAGCTATACCTCCAGGTGTTTGTGTCTGACAGGAGGGGAGAGCGCAGGGCAGCAGGACACTCTGTTTTCCAGATAACACCTTGTTTACCAGAGTAAATGGCAGTCAGAGgggggtagagactagagagcctGGTTGAGACACACGACACAGCTGACCGTCAGAGgggggtagagactagagagcctGGTTGAGACACACGACACAGCTGACAGTCAGAGgggggtagagactagagagcctGGTTGAGACACACGACACAGCTAACAGTCAGAGgggggtagagactagagagcctGGTTAAGACACACGATACAGCTAACAGTCAGAGgggggtagagactagagagcctggttgagacacagacacagctaaCAGTCAGAGAGGGGTAGAGACTTGAGAGCCTGGTTGAGACACACGACACAGCTAACAGTCAGAGGGGGCTAGAGACTACAGAGCCTGGTTGAGACACACGACACAGCTAACAGTCAGAGaggggtagagactagagagcctGTTTGAGACACACGACACAGCTGACAGTCAGAGGGGTGTAGAGACTACAGAGCCTGGTTGAGACACACGACACAGCTGACAGTCAGAGaggggtagagactagagagcctGGTTGAGAGACACGACACAGCTGACAGTCAGAGaggggtagagactagagagcctGGTTGAGACACATGACACAGCTAACAGTCAGAGaggggtagagactagagagcctGGTTGAGACACACAACACAGCTAGCAGAGACAGATCTGTACCTGGTCACATTATAATGCCATAACAGGTGATACACAACtgctagtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagacagagagatgtttGCTGCTGAAAGGTTTCACTTATCAGCAACGTCAACCTATACTTCATGGAAAACCTTCTAGTTTGAAGTTAAGACAAGGGCAACGTGAAAGACAGAGTCTGGGGCACTATGGCTGCGTTTCGACAGGCagcccaaattttttttttttcattaattggtcttttgaccaatcaggtcAAATGATCTGATTGTCTGAACAGCCAATGTCTACTCAACGTTGTGTATGATGTAGTTTACATGAAGACAGTTGTGAGAAGTTGTTTTGACACAACATAATTAATATGCAATGTTAACTTTTACATTTTACTGCACATTTTTAATGTTTTGTTCTATGCTGAGGAAAATGTGCTGTGTGAAATTAGTATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU515889 lncRNA downstream 4889 91100712 ~ 91100911 (-) True G455651
TU515882 lncRNA downstream 15554 91089866 ~ 91090246 (-) True G455646
TU515881 lncRNA downstream 17001 91088594 ~ 91088799 (-) True G455645
TU515880 lncRNA downstream 18575 91087001 ~ 91087225 (-) True G455644
TU515872 lncRNA downstream 32770 91071712 ~ 91073030 (-) True G455639
TU515899 lncRNA upstream 2743 91111837 ~ 91112128 (-) True G455661
TU515900 lncRNA upstream 3305 91112399 ~ 91112793 (-) True G455662
TU515926 lncRNA upstream 80016 91189110 ~ 91189554 (-) True G455685
TU515971 lncRNA upstream 133403 91242497 ~ 91248275 (-) False G455711
TU515972 lncRNA upstream 133403 91242497 ~ 91244907 (-) False G455711
XM_036978745.1 mRNA downstream 102168 90979189 ~ 91003632 (-) False aspm
XM_036978746.1 mRNA downstream 102168 90979189 ~ 91003632 (-) False aspm
XM_036978748.1 mRNA downstream 102168 90979189 ~ 91003632 (-) False aspm
XM_036978756.1 mRNA downstream 173539 90912429 ~ 90932261 (-) False LOC110524789
XM_036978755.1 mRNA downstream 173539 90912450 ~ 90932261 (-) True LOC110524789
XM_036978764.1 mRNA upstream 22514 91131608 ~ 91220909 (-) False LOC110524793
XM_036978763.1 mRNA upstream 22514 91131608 ~ 91221702 (-) False LOC110524793
XM_036978762.1 mRNA upstream 22514 91131608 ~ 91291859 (-) True LOC110524793
XM_021604691.2 mRNA upstream 193450 91302544 ~ 91312345 (-) False lhx9
XM_021604688.2 mRNA upstream 194656 91303750 ~ 91312346 (-) False lhx9
TU515886 other downstream 9465 91094709 ~ 91096335 (-) True G455649
TU515828 other downstream 31037 91073996 ~ 91074763 (-) True G455600
TU515863 other downstream 44815 91057457 ~ 91060985 (-) True G455630
TU515713 other downstream 203399 90886072 ~ 90902401 (-) True LOC110524787
TU514982 other downstream 632186 90454681 ~ 90473614 (-) True G454882
TU515974 other upstream 148013 91257107 ~ 91258984 (-) True G455713
TU516686 other upstream 787542 91896636 ~ 91914788 (-) True G456288
TU518021 other upstream 1402825 92511919 ~ 92514384 (-) True G457385
TU518066 other upstream 1462885 92571979 ~ 92573894 (-) False G457422
TU518067 other upstream 1462885 92571979 ~ 92573894 (-) True G457422

Expression Profile