RNA id: XM_021604688.2


Basic Information

Item Value
RNA id XM_021604688.2
length 3633
RNA type mRNA
GC content 0.44
exon number 5
gene id lhx9
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91302544 ~ 91315662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCAGGCTTTTGCTCTCTTCACAAATAGAACACGGCTCTCCAACTCAGGCAGTCCCAATCTGACCTTCAAGCACACGGAAGGAACCCTGTAACGGGAGATCGGTTAGGGACTGTCGAGAGAAAAATACCCAATCTAAACTTCTGCCATTTTAACcgttcatcaccatcatcatcagtgCGTGTACTGGCACCCGCCGGATCAGCTGGACtatacttttttctttttttggtaACAAGACATTCAGGGGAGAGGAAAAACCTTTAATTCCTGCCTTGACTTCTCCCCGTTCCTCATCTCTACACCGAGTTGTATTCGTTTCCCCGTTTGCTTTGCACACTTGCAGAGGAGGTAAGCTGAGCTGAGTGTGCCtcttgtgtgtgtatgcctgtctCGCAGCAGAACCAGTCGGATGCTCTGAGCCTACCGGACGCAGAGCTGTATATGGAAGTTGTAGGCTATAAGGCAGAAGCGAGCTGTTGCACATTGCGTCGTTCAAGAGCGGGAGCCATGCTGTTCCACGGGATCTCCGGTGACCACATCCAGGGCAtcatggaggagatggagaggagatccaAAACCGATTCGCGCCTGGCCAAGGGCGTGCGGCTCAACGGAAGGGAAGCGACCATGCCTTCCATGGGCCCTGAGAAACCCGCGTTGTGTGCCGGCTGTGGAGGCAAAATATCGGATAGATATTATCTGCTCGCTGTGGACAAACAATGGCACCTACGGTGCCTCAAATGCTGTGAATGTAAACAGCATTTGGAGTCAGAGCTCACGTGTTTCGCCAAGGATGGCAGCATCTACTGCAAGGAGGATTACTATAGAAGGTTCTCCGTGCAGAGGTGCGCTCGCTGCCACCTCGGGATCTCAGCATCTGAGATGGTGATGCGCGCGAGGGACTCCGTGTACCACCTGAGCTGCTTCACGTGCACCACGTGCAACAAGACCCTGACCACAGGCGATCACTTCGGCATGAAGGACAGCCTGGTGTACTGCCGGGTCCACTTCGAGACCATATCCCAGGGAGAGTACCCCCACCCTGGCCTCAACTATGCCGAGATGGCGGCTAAAGGTGGAGGTCTGGCGCTGCCATACTTCAATGGCACTGGAACGGCCCAGAAGGGAAGGCCTCGGAAGAGGAAGAGCCCCGCCATGGGCATAGACATCACCAGCTACAACTCAGGTTGTAATGAGAATGATGGGGAACACCTGGACCGTGACCAGGCCTACCCTCCAGCCCAGAAGAACAAGCGCATGCGCACCTCCTTCAAGCACCACCAGCTCCGCACCATGAAGTCCTACTTTGCTATCAACCACAACCCCGACGCCAAGGACCTCAAACAGCTGGCCCAGAAGACAGGCCTCACCAAAAGAGTTCTCCAGGTATGGTTCCAAAACGCAAGAGCCAAATTCAGAAGGAACGTTTTGCGACAGGAGAATGGTGTTGACAAGGCCGACGGCACGTCACTCCCTCCGCCCTCGTCCGACAGCTGCGCTCTGACGCCCCCCTCCAGCGCGGCCACACTAACAGACCTGACCAATCCCTCTATCGCTGTAGTGACCTCCGTCACGTCTAGTTTGGATGATTCGGGGAGCCCCTCACAGACTACCTTGACAAACCTTTTCTAGCAAGCTCTACGACTCCTAGCAAGaacaacgacaacaacaacagcaacatttAATCAGGAGGAGATTATTTTCATGTGTAGCATTTGCAACCGCTTGGCAGCTGAGTTTGTAGTCAACCTATTTAGTGATTGGTTTTGTGTCGAGGACGTTTTGAATCTGGAAGGCATTGACAAATCATTATAGAGGGTTCAACAATCTGGGTCAGAGCCCAAATTAAATTATTTACATGGTAATAGTATATTATTTTTGACTTTATTTCATTGAATttgttcatttgatttgatttagtctaaATTGATCCCGCCTGATAATTGATTTTAAATCATTAATACTATGTTAGTCCTATTTAAGGCATATTTcgatcttatttaaaaaaaaaaaaatactaaataaaatctttgaaatatGAATTTTCAGAATGTTGTTTAAAAGATCATTCAGAGTTATCCTGGATGTTATTATAGAGATGAGTAATTTCTCGTCTCTAAATGACGTTGTATACATTACAACAAGCCAAACATTACGACTCTAATGCCAGGTGGCTGTAGTGACGGCAACATGCATTTTGTCTTAACATGATACGCCTCAACTGTGATAGAAAATAATAAGAACAGAACAAATCTCTAGATCTGTACAGTGGTAACTGTCCAACATGTAATGCAGTCACGTTGAAATTAGAAGGAGTTCAACTATATAAATCAGTGAGTGAAATTCTGATTGGGACAGAGTTCTTGGGCACTGTTTGAAATGAATATTTTCATGATACTTTTACTAATCTGTTGGCCTCATTTGACATACCAAACACACAAATGGAAAAACAATAGTTTATCTGGATTCAGCGAGCCCGTAGAATTACTGTTAAGTACAGTTGTACAGTGACAATATACTGCCCAATGAAaagtgcattattattattatcatcatcatgttTCTCAGGGTAAAGAAGGGTTGATTCTGAAAAAGGTAAGAAGGTAGGAGAGGAAGATAATAAAAAGTGAGGGATGACGATATGGAAGATTAGATGTGTAGAGCTGACAGAAACATCACAATGACCCCAGAAAAGCTGGATATATTCGACAGTCGGTGGGACAAAGAACTCATCCTCCGCCTTTTCTCCTTGGCCAAATTTAAACTTTACCGACACTTGCTACTGAACAgaccaaattatattttcccctctGGCTGATTTCGGGGGAAAGAGAGACAAGAGGAATAGAAGGATTGCTTTCTGACGGGGTTAAACTTTTGTTTGTCTCCTGGGCCAGCTGTTTAAGGTCGTTGGCGTCGGGTTGTGGTTGATAGCAAAGCAGGACTACATGGTGCGAATTAGGAGAAAGAAAAAGACAGAGTCCTGGCTGCAGGGTTCAAACATTGTATTGTAATTGTCACAATTTGTTCTACTGTAGAACATAGCGTTACTCTCAAACTACTTGATGAAGTAGATGCTTAACTCAATTCTACTATGTGCCTTATGCTATAACTTGGAAGAAAGTTTGTGAACTTCAGGATTATCTGTGTTGTTTGTTGACTGATTCACATCCTTGTGACGCCTCACTAGTTTTGTACTGTTTTGCATCTTATTTCTGAAGATGTTTTTATGGTGTATCCTGTCAGAAAGGGGGCAGCGATGTCTCAGAAAGCATTTGTGCACTTCTTTCACATACAGTTGGTTGATTCCAATAATCTTCGTGTTAATAGTTGAGTACAGTAAGTGTTCTATCGAGATTGTCCATGTTTCCCTGTTTCTTGACAAAGATGGTGTATAGAAACTATTTCTCCTTAAATATTTATGGACCAAACGGTTGTTATATATCTTATTAAATTTgtgtgaataaaaaaaaatactttgttTTAAATgagttttatttttcattacaCTTGCCATGTTTTTGTGTTATCCCTTAGATACtaggtttttattattttactcACATCaacaaatggagaaaaaaaagcatTCAATGATTGATTGACCAATTAAAACAAACGTTCCACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU515979 lncRNA downstream 20981 91282063 ~ 91282769 (-) True G455718
TU515967 lncRNA downstream 54753 91247492 ~ 91248997 (-) True G455711
TU515971 lncRNA downstream 55475 91242497 ~ 91248275 (-) False G455711
TU515972 lncRNA downstream 58843 91242497 ~ 91244907 (-) False G455711
TU515926 lncRNA downstream 114196 91189110 ~ 91189554 (-) True G455685
TU516014 lncRNA upstream 50939 91363285 ~ 91445348 (-) False G455751
TU516015 lncRNA upstream 50939 91363285 ~ 91457328 (-) True G455751
TU516024 lncRNA upstream 63060 91375406 ~ 91430319 (-) True G455760
TU516061 lncRNA upstream 142214 91454560 ~ 91455729 (-) True G455791
TU516065 lncRNA upstream 153376 91465722 ~ 91465933 (-) True G455795
XM_036978762.1 mRNA downstream 11891 91131608 ~ 91291859 (-) True LOC110524793
XM_036978763.1 mRNA downstream 82048 91131608 ~ 91221702 (-) False LOC110524793
XM_036978764.1 mRNA downstream 82841 91131608 ~ 91220909 (-) False LOC110524793
XR_005051894.1 mRNA downstream 194656 91105800 ~ 91109094 (-) True LOC118964688
XM_036978748.1 mRNA downstream 300118 90979189 ~ 91003632 (-) False aspm
XM_021604708.2 mRNA upstream 348481 91660827 ~ 91677939 (-) True abhd8b
XM_036978776.1 mRNA upstream 369499 91681845 ~ 91772450 (-) False ano8b
XM_036978777.1 mRNA upstream 369499 91681845 ~ 91772450 (-) False ano8b
XM_036978779.1 mRNA upstream 369499 91681845 ~ 91772450 (-) False ano8b
XM_036978774.1 mRNA upstream 369499 91681845 ~ 91772451 (-) False ano8b
TU515974 other downstream 44766 91257107 ~ 91258984 (-) True G455713
TU515886 other downstream 207415 91094709 ~ 91096335 (-) True G455649
TU515828 other downstream 228987 91073996 ~ 91074763 (-) True G455600
TU515863 other downstream 242765 91057457 ~ 91060985 (-) True G455630
TU515713 other downstream 401349 90886072 ~ 90902401 (-) True LOC110524787
TU516686 other upstream 584290 91896636 ~ 91914788 (-) True G456288
TU518021 other upstream 1199573 92511919 ~ 92514384 (-) True G457385
TU518066 other upstream 1259633 92571979 ~ 92573894 (-) False G457422
TU518067 other upstream 1259633 92571979 ~ 92573894 (-) True G457422
TU518070 other upstream 1262037 92574383 ~ 92574754 (-) True G457423

Expression Profile