RNA id: TU518093



Basic Information


Item Value
RNA id TU518093
length 1077
RNA type TUCP
GC content 0.43
exon number 2
gene id LOC110524822
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 92629338 ~ 92630894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCTGATGTAACCTCGCGTCTCAAAGTAGCGGTCATCTGAATGAACAAGGAAGTAACAAGACCATTTATTTACTGTGCGAGATGGCCATCATTCGTATGTTGTTCTCTTTCCTGAACAATCCACGAGTCATTGAGAAACTAGCGGAGTCTCGACCTATCCGACGTGCGGCACAGATCACAGCTTTTGCGATCATCAAAGCACAAATCGCTGGGAAGGTTGCGACGGCGAAGGTCCTGAAGTCAGACACGCTACGCCAGGTTCGGCAAGAGGCAAACGGACGGATTCCCCGAGACGCTGGTGACATCGGGACCCGGTTCAGAAGAGTGAGGGAGACTTTTGTCAAGGAGGTGAAAGATGGCTTCAGAGACGCTCAGGGACAAATaaagaaatgaagaaattaagCAGTAGTCTTATGTCTGTATGACAGACAAACAATCATGTGAACTGTTGATAACGTGACCGACAACGTGACCCGTCCCACAACTGTCTAGGCCGACTACTATTACATGACTGAGCCAATATTTTAATATATTGACGGGAACACTAAGCTACTGGTAAACCAGCTACTATGTCTCAAAACATACTCAAGATTAATTTTCCATCAGGGAGATCTCATGTAATGAGTGTGGAGTGTTTATCTGACTGGTTTAAAAACAAAGTTGTGCCCCTGTAATGAATGTTGGGGTTTGTGGTGGATGAGTCTACTGTAACAGGTCTAGGTTTGTGGTTAGTTAGCCTACTGTAAGACGTCTGCATACTGGAGACAAAGAGTCGTTGCAATCTACCCAGTAGTCTTTATTTAGGAGTTTGTGTTTGTAGATCTGGAATTGTCTACCTGATCTGACTTGCAGAATACCATCATATAGTACGTTTGCTGTCATGCAGTCCCACGTCAGTTCCCATGACATATTATGACTTGAGGTGTTTGGATTGTCCTCACCTATTGGCCAAATCTTAGTGAGCTTTTAAATGTCATGTATTTTACCAATAAAAGATCATTCAGATAAAAAACAAATGACTAGACAACACGAGGTTTAGGCCTCTATTCAATCAATCCGTATTGTGGAAAATTCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU518088 lncRNA downstream 4831 92623469 ~ 92624710 (-) False G457435
TU518089 lncRNA downstream 4831 92623469 ~ 92624710 (-) True G457435
TU518084 lncRNA downstream 13220 92615772 ~ 92616321 (-) True G457432
TU518078 lncRNA downstream 18624 92609508 ~ 92610917 (-) True G457428
TU518050 lncRNA downstream 31318 92597811 ~ 92598223 (-) True G457410
TU518099 lncRNA upstream 1286 92632098 ~ 92632321 (-) True G457441
TU518102 lncRNA upstream 13892 92644704 ~ 92644932 (-) True G457444
TU518103 lncRNA upstream 17964 92648776 ~ 92649011 (-) True G457445
TU518106 lncRNA upstream 28204 92659016 ~ 92659841 (-) True G457448
TU518108 lncRNA upstream 29460 92660272 ~ 92660675 (-) True G457449
XM_021604721.2 mRNA downstream 584519 92005276 ~ 92045022 (-) False si:ch73-61d6.3
XM_036978790.1 mRNA downstream 648945 91978211 ~ 91980596 (-) False LOC110524808
XM_036978829.1 mRNA upstream 6043 92636855 ~ 92642203 (-) False senp5
XM_036978827.1 mRNA upstream 6043 92636855 ~ 92642257 (-) False senp5
XM_036978831.1 mRNA upstream 6043 92636855 ~ 92642257 (-) False senp5
XM_036978828.1 mRNA upstream 6043 92636855 ~ 92642262 (-) False senp5
XM_036978832.1 mRNA upstream 6043 92636855 ~ 92642262 (-) False senp5
TU518070 other downstream 54787 92574383 ~ 92574754 (-) True G457423
TU518066 other downstream 55647 92571979 ~ 92573894 (-) False G457422
TU518067 other downstream 55647 92571979 ~ 92573894 (-) True G457422
TU518021 other downstream 115157 92511919 ~ 92514384 (-) True G457385
TU516686 other downstream 714753 91896636 ~ 91914788 (-) True G456288
TU518175 other upstream 294884 92925696 ~ 92931639 (-) False G457491
TU518168 other upstream 296309 92927121 ~ 92931639 (-) False G457491
TU518163 other upstream 296393 92927205 ~ 92931639 (-) False G457491
TU518177 other upstream 296985 92927797 ~ 92931639 (-) True G457491
TU518227 other upstream 309694 92940506 ~ 92943525 (-) True G457534

Expression Profile