RNA id: XR_002473391.2



Basic Information


Item Value
RNA id XR_002473391.2
length 393
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110522899
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 93073370 ~ 93078003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTCTGCAGATCTCCATCCAGGACATCCTGAGGCCCTCCTTTAGACCTTCCCTGTTGTTTCCGCCCACCACTGGGTCAAGTGGGTCCATAGCAGGTGGGATGCtgggagggagatggaaagagactTCCTGATTAAGAACGAGGGGCACAAACATGGACAGATGTTTTCCGAACCCCATCTGGCCCAAACCTTCCAGctaccatcaacccctcccatctaccaTTCAGAACAGAGGCGTGATGAGTCTGGAGGATCTATGTGACCATGACAACGAGGAGTTCAAACAAATCCACACTGACTACAGGgGGGTGAAGCTATGGAAAATCTCTCATGGCAGGACTCATGGCCCTCAATATACTGGAGAACTTTCCCATCAAAGGTACACTCCTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU518324 lncRNA downstream 1432 93071683 ~ 93071938 (-) True G457608
TU518322 lncRNA downstream 6094 93067075 ~ 93067276 (-) True G457606
TU518231 lncRNA downstream 115665 92951828 ~ 92957705 (-) False G457538
TU518236 lncRNA downstream 115665 92951828 ~ 92957705 (-) True G457538
TU518216 lncRNA downstream 163136 92909134 ~ 92910234 (-) True G457523
TU518333 lncRNA upstream 5739 93083742 ~ 93083943 (-) True G457617
TU518339 lncRNA upstream 13581 93091584 ~ 93091787 (-) True G457623
TU518372 lncRNA upstream 105355 93183358 ~ 93183558 (-) True G457651
TU518373 lncRNA upstream 106517 93184520 ~ 93184767 (-) True G457652
TU518374 lncRNA upstream 107456 93185459 ~ 93185662 (-) True G457653
XM_036978837.1 mRNA downstream 11069 93044898 ~ 93062301 (-) True tm4sf18
XM_036978795.1 mRNA downstream 31891 93002071 ~ 93041479 (-) True cp
XM_036978826.1 mRNA downstream 215046 92673694 ~ 92858324 (-) True anos1b
XM_036978830.1 mRNA downstream 430333 92636855 ~ 92643037 (-) True senp5
XM_036978828.1 mRNA downstream 431108 92636855 ~ 92642262 (-) False senp5
XM_021604747.2 mRNA upstream 22248 93100251 ~ 93164510 (-) False wwtr1
XM_021604748.2 mRNA upstream 22248 93100251 ~ 93164513 (-) True wwtr1
XM_021604750.2 mRNA upstream 92831 93170834 ~ 93178501 (-) False commd2
XR_005051901.1 mRNA upstream 92831 93170834 ~ 93178501 (-) False commd2
XM_021604751.2 mRNA upstream 92831 93170834 ~ 93178507 (-) True commd2
TU518311 other downstream 53090 93018394 ~ 93020280 (-) True G457595
TU518230 other downstream 106378 92950678 ~ 92966992 (-) True G457537
TU518227 other downstream 129845 92940506 ~ 92943525 (-) True G457534
TU518163 other downstream 141731 92927205 ~ 92931639 (-) False G457491
TU518477 other upstream 363897 93441900 ~ 93442413 (-) True G457740
TU518479 other upstream 384349 93462352 ~ 93463079 (-) True G457742
TU518683 other upstream 782843 93860846 ~ 93863614 (-) True G457909
TU520343 other upstream 2480687 95558690 ~ 95559210 (-) True G459282
TU520386 other upstream 2524420 95602423 ~ 95602927 (-) True G459323

Expression Profile