RNA id: XM_021604747.2


Basic Information

Item Value
RNA id XM_021604747.2
length 3114
RNA type mRNA
GC content 0.45
exon number 6
gene id wwtr1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 93100251 ~ 93164513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCACCAAAAAAAGTCATTATCTTCTACAGAACATTCAAAACACAAACATCCAGTCGATATTTTTAGATTAACTTTACTTAAATTGTTATATTTCAGTAAATAACTAGTTTAGAGCAGAACACAGGGCCGTCTCCAAACGGAAAGAAGCAGCTGTGATTTATTACAAAAACCATCTCGCAACAACTCTATTCCGCAACTTTGTGGCGTTGAGTTTGAACTATTTCAACATTTGCGTCATTGTTACACCCGCCATCAATAGTTTGTAAATTGAGAGATATTTGTTTAGTAATCCTGAAACGGTGCAACCCCTCGAGCGCCGGAGGTCATGCATAATTCATGAGCGACTGCTGACACAGGCGTCGTAGAAAAGTTGAGTTTACAAACTTTGGGACAGGAGCAACAAGATCTACCGAACTGACCGGAGCAAAGGGAAAGTAGCTACATTTAAAATTACTTTTCTCATGTAGGGACACATTTAGTTGTTCTCTATCTTACTCTAATAGAATAGTTTTATTGCGAGTTTGACGGCAGAAAGGTGAACTCTTTTTGTCCACACAGAGGGTTTATAAAAGTTTGCCTGagagtagcctaggcctacttcaGAAGGCTCAACGTTTGATATTTGTTTAAAGCCTCAACTTTAAATCGTTTTTATATTTTCTGTATTGCTCTACCTTTTACACTAAGACAAAATGAGCAACCCACTTCAGCCAATGCCAGGACAACAAGTTATCCATGTCGCGCAGGACTCGGATACGGATCTCGAGGCGCTTTTTAATTCGGTTATGAACCCGAAACCCAGTTCATGGAGGAAAAAAATGTTACCCGACTCTTTTTTCAAGGAGCCAGATTCTGGATCTCACTCCCGACAGTCTAGCACTGATTCGGGCAGTCACCCGCCCAGGCTCACCGTACAACACGTACGGTCACATTCCTCGCCCGCAACTTTACAGATTGGATTGGGAGCCAACCCAACTCCAAGCCCGGTACATCACTCGCACATCCGCCACCAGTCTTTCGATGTTGCCGAAGAGTTGCCCCTGCCCCCTGGATGGGAGATGGCCTACACGTCCAACGGACAGAAGTACTTTCTCAAtcACGTGGAGAAGATCACCACTTGGCACGACCCTCGGAAGACCATGACGACAGCCATGAACCAGATGAGTCTCCACGCCCCCCCACCCTCTGCCAGCCCACAGCAACGCAACATGGCCCTGTCCCAGCCCAACCTTGTGAtgtcccaacaccaccaccagcaGCACCTGCAACACACCCAGCAGCAGCCCCAACAGGCCCAGGCCTTGGGTTCACCTGGCTCCCTCCCCCAGCAGCAGAGCTCCCAGGCTGGGATGATGAGTCTGTCCAGTCCCCTGGGCGTGGTTGTCAGTACCCAGCAGAAGATGAGGCTGCAGCGCatccagctggagagagagaggatccagAGACGCCAGGAGGAGCTCATGAGACAGGAGGTGGCACTGTGTAGACAGCTCCCCGTGGACTCTGAGAGCATGGCACCAGCGCCCACCCCTGGTGGCAACCCTGCCCAGCCCATGACCCAGGGAAACATGCCCACCAATGGATCTGACCCCTTCCTCAACAGTGGTCACTTCCAGCACTCCCGGGAGCAGAGCACAGACAGTGGCCTGGGGCTGGGCTGTTACAGCATCCCCACCACCCCAGAGGACTTCCTTAATAACATGGAGGAGATGGACACAGGTGAGAGCATGGCCCAGGCGGGCAGTATGAACGTGTCTCAGCACAGCAGCTTCCCAGACTTCCTGGACTCCCTGCCAGGGACCAACGTGGACCTGGGAACCCTGGAGGGAGCGGACCTCATCCCCATTCTCAACGATGTGGAGTCAGTCCTCAACAAGAGCGAGCCCTTCCTCACCtggctgtaaacacacacacgtacacacacgcacacacgtacacacacacacacacacacacacacacatcttctaCAAACGCACACATcttctacaaacacacacacacacgcccaacAAACAGGACGAAAGACTCCACGTATCTAAAGACTCTGTCTGTGCTGCCTTTGGTGACCTATTCAAATCAGCTTGATTGATTTTTCACGTGTCCAGTAATAATACCCTCTGTCTGCCCGACCACCTATAAATCTGAGTTCAGTTCAGGTTCAAGATATCTAAAGAGTATTAACCAAAGCCTTGAGAGaacaaaaatctaatcaaatcaggACACGTGTCAAAGTGaatactgtaatgtaacaaaagttAGTAGTTTTGTATGTTCTGTAAGACTCTCCCCACCCTGGTTTTTGAATCACAATAGATGTTATTTTTTACAGCTTTCCTGTCTCTCTTGGGGTGACACTCTCTATGTGGAACAAGTacttggtgaaaaaaaaaaatgtattggcgTCCAATGGTATTGCTTTGTCATGACTAAATGTATGCAGGGAGGCTTTTTTTTACCAATAGGTGGCGCTATTGCTTAAGCTACTGTAGTTATGAAATGGCTCTTTACTGGCAACAAGGCTGTCCCATCTGTAGGTTCTTAGTAGTGCACGTCTGTCGGCTACAGCACTGTAAACCTTCTTCTCTAACAAATGATCAATCACCAACAGTATTTTAACTGTCAGTTTGGGTTTGAATTCAAAATCCACACTGTTACTGTTGTTTCTGTTCataaattctttttttttttaactacagATTCACTTCTACATCAGCATTAGTAGCCATGGGAACAAAGTGTGTTGTATACCAAATAATGTTTCCTATTGTTCGCTACAATGTCACTACAAAAGCTTTAAAACTTTAAAATTGTACTTAGTTTGATTTTTAAACAGAACTGTTTTTAGTTTTTTGTCATTTTAATAATTGTACTCCAATGTAGCCAATTGAACACTAAAATGTCATGCCTCAGTTATGAAACAATGTCAAATTCTGTATTCTAATACGtacactttaaaaaatatatatcatactATAGTATTAGGTTTTTTTCTGATCTGTAAAATAGCCTACCTGGGTTCTTTGCATTTGGTGCCATTTGTAGGACTTATAATATAGTTAGCATTTTTTGTATTTATCAAGAGCTATGATTCTATTTCttttgttcaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU518339 lncRNA downstream 8464 93091584 ~ 93091787 (-) True G457623
TU518333 lncRNA downstream 16308 93083742 ~ 93083943 (-) True G457617
TU518324 lncRNA downstream 28313 93071683 ~ 93071938 (-) True G457608
TU518322 lncRNA downstream 32975 93067075 ~ 93067276 (-) True G457606
TU518231 lncRNA downstream 142546 92951828 ~ 92957705 (-) False G457538
TU518372 lncRNA upstream 18848 93183358 ~ 93183558 (-) True G457651
TU518373 lncRNA upstream 20010 93184520 ~ 93184767 (-) True G457652
TU518374 lncRNA upstream 20949 93185459 ~ 93185662 (-) True G457653
TU518379 lncRNA upstream 33113 93197623 ~ 93219083 (-) True G457657
TU518382 lncRNA upstream 41507 93206017 ~ 93206359 (-) True G457660
XR_002473391.2 mRNA downstream 22248 93073370 ~ 93078003 (-) True LOC110522899
XM_036978837.1 mRNA downstream 37950 93044898 ~ 93062301 (-) True tm4sf18
XM_036978795.1 mRNA downstream 58772 93002071 ~ 93041479 (-) True cp
XM_036978826.1 mRNA downstream 241927 92673694 ~ 92858324 (-) True anos1b
XM_036978830.1 mRNA downstream 457214 92636855 ~ 92643037 (-) True senp5
XM_021604750.2 mRNA upstream 6324 93170834 ~ 93178501 (-) False commd2
XR_005051901.1 mRNA upstream 6324 93170834 ~ 93178501 (-) False commd2
XM_021604751.2 mRNA upstream 6324 93170834 ~ 93178507 (-) True commd2
XM_036978840.1 mRNA upstream 25023 93189533 ~ 93211099 (-) True lmnb2
XM_021604753.2 mRNA upstream 60803 93225313 ~ 93239678 (-) True lonp1
TU518311 other downstream 79971 93018394 ~ 93020280 (-) True G457595
TU518230 other downstream 133259 92950678 ~ 92966992 (-) True G457537
TU518227 other downstream 156726 92940506 ~ 92943525 (-) True G457534
TU518163 other downstream 168612 92927205 ~ 92931639 (-) False G457491
TU518477 other upstream 277390 93441900 ~ 93442413 (-) True G457740
TU518479 other upstream 297842 93462352 ~ 93463079 (-) True G457742
TU518683 other upstream 696336 93860846 ~ 93863614 (-) True G457909
TU520343 other upstream 2394180 95558690 ~ 95559210 (-) True G459282
TU520386 other upstream 2437913 95602423 ~ 95602927 (-) True G459323

Expression Profile