RNA id: XM_036978842.1


Basic Information

Item Value
RNA id XM_036978842.1
length 5152
RNA type mRNA
GC content 0.56
exon number 33
gene id LOC110524839
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 93300490 ~ 93412367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCTCAGACCAAGTCTCGGTGTTGCACGGCGAGCTGACCAGCTCCAGCTAGCCTTCTCTATGGCAGATTCTCCCTTAAACAACTCCTGGCCTTCTTTCTCCAAACTCTGGATGAAACGTTGGTCCTTCAAGAGAGGATCAGAAGGTAAGCCATGTTCTACCCTGCAGCCCTGTGTGAGTGCCTCAGAGGCATCCTCCTTGTCCTCGTCCCTGTCCCCAGCCTCCGTCGCTAAGGACGTCTTCTTCAACATCGCCACTGAGGAAAAGGATGATGAAAGTGACTATGAGAACCCAAGCCTGGATGAGGATGTAGACAGCAGTGTGGAGGATCTGCTGGGTTTAAGCTGTTCCTTCATAGACTCAAACTATTACAAAGACCATCAAGGGGTACACTCCGTATCGGCTGCCCCAGAAACCAGCCCTTCTACCCTGGGCTTTCCCAGTAGATATAGCGACAGTCCCCAGCACAGCTCCCAGCTCCATCCCAATCCACATCCCTATCCACATCCCTATCCATATCCCTATCAAGAGACTGAAAACAAATCCATACCCCATCACACTATTGTGGTcacccagttcaaccctaacctgtTGCAGTCAGGCAGTGCCATGGACGGCTATAACAGTGAGTCGGTGGACCCTGTGGACCCTGTGGGTGTGGTGAGCACTATGGTGAATCTGAATGGACCAGGAGGACAAGGAGACATGATGGATTCTGACAGAGAGAGCTTCCCTATCCTGATCAGGTCCATGTCTACATCACGCAGACACAGCTTGGGCATGCCCATGTCTCCCATCGACTTGGGGAGGAGGCTGAGCCTGGACGCCATAGAcagcgatggagagagggatgactctctcctccgctcctccCACCTACAGGCGTTTATATACCCAGGATGCCCTGAGCAGGAAGTGGAGGAGTCCGATGGGACAGACCTCTCCAGATCTGAAGCCAAGGAGACAGAAACGGAGGAGTACAGTCGGTCTGGAAGGACATACTCCAGAACAGAGATTCTGGCCACAGATGAGCACATTCACGTCGCACACGTGTCTCACGTAGTGGAGACATCGAAGAGGGCAGCAGGAGAGGAGCTGGACCCAGAGGAACCCAACTTGCACACTGCAGAAGGACAGACTCATATGCTGATGATACAAAAAGTTCTGCAAGAGCTCAAGCAGTACCACGGAGCCAGGCAGAGGACCACAAGGCCAGAGGGGAAGGAGACTGGAAGTAGTGTCACCTGGTATGAATTTCTCTCCAACGAaaatgaggaagaagaggaccgAACAGAGAAAGTGGAGAAGGGGACCAAAGTGAAGCGCACCCTGAGCTCGCTTAGGAGCAGAATGACTGGCTCATTCAACAAAGACAAGCAGGACTGTGCAGTGAACGTTCACAAGAGTTGTCGGACGCTACTAGCTGAGTGTAACAGCAGCAAGAACAAGAAGGATTCTCTGCATAGGACCTCCACAACAGCGTCGCCGAACCTCGCCCTGAGGGATCGGGACCAGTCTTCTTCGGCCCTTGATTGCCCCTCCGGTTCTCCGCGCATCCCAGGCATGACCCTCACCCCGCGGGGACCCAGTGCTCAGCCTGCCTCAGCCGCCTTCAACAGCTCTTCCTCCAGCCACACTGCTGCAGCCAGCCTCAACCACAGCCACAACAGCCACACCGGATCCCTCTCAGGGGACATGGACGAACCGGACAGCCTACGCTCCGGTCTCAGGCGCTTCAATGAGGACGCCGTCTCCCTGGCCCCATCCACCACTGACTCCATCGTTGTAGAAGATGCGTACTACTCTGCATTTCGAGCTGATCTGGAGTCTGATGCCCAGGACCTGGAGGTGGAGTCATGGAGTCTGGCTGTGGACCAGCACTACCTGAAGAAATACACCAAGGAGACGGTCAAGAGACAAGACGTTATCTACGAGCTGATGCAGACAGAGATGCACCACGTACGGACCCTGAAGATCATGCTGCGTGTTTACATGAGGGAGCTGAAGGAGCACCTCCAGATGGACGAGCTGTTCCCGCGCCTAGAGAGCCTGCTGGAGCTGCACACAAGCTTCCTGTCCCGCCTAAAAGAGCGGCGCCGAGACTCCACGCAGCCCGGCAGCGACAGGAACTACAACATACAGAGACTCGCTGACATCCTcaccacacagTTTTCAGGTGAGAAAGGGGATCGGATGAAGGAGAACTATGGTGATTTCTGCAGCCACCACACCGAGGCTGTCAGCTACTACAAGGAGCAACTACACAACAACAAGAAGTTCCAGAACCTCATACGGaAAGTCAATAATTTGTCCGTTGTGAGAAGATTAGGAGTGACTGAGTGTATCCTCCTGGTGACACAACGCATCACCAAGTACCCTGTGCTGGTAGAACGTATTGTGCAGAATACAGAAGTGGGTACGGAGGAACACGAGGAGTTGACCAGGTCTCTTAGTCTGATTAAAGACTGCATCGTCCAGGTGGATGCCATGGTCAACCTGCATGAGAAGGCCTCGCGACTCCGAGACATCGCCCACAAGATGGAGCCCAAGTCCCTCGGCAAGATCAAAGATGGCCGTGTGTTCCACAGAGAGGACCTGTCCCAGGGTCGACGCAGGCTGCTGCACGAGGGGACGGCCAACCACAAGGCCGCCTCCGGCAGACTCAAAGATATTGTGGCTGTGCTGCTGTCCGACGTGCTTTTGTTACTCCAGGACAAGGACCAGAGATATGTTTTCTCCACAGTGGACAACAAGCCCTCAGTGATCTCCCTCCAGAAGTTGATAGTGAGGGAGGTGGCCCACGAGGAGAGGGCCATGTTCCTGATCTGCGCCTCCTCCAATGAGCCGGAGATGTACGAGATCCACACCGCCTCCAAGGAGGAGCGCAACTCCTGGATGACACACATCCGGCAGGCCGTGGAgagTTGTCCACACACTGAGGAGAGACTTTTCAGTGAGCAGGAGGAGGCTCGAGCCGCCAGATTCAACGAGTTCCAAGAGCGTCTGAGACAGAAGGACTCTCAGATTGTGACGTTGCTGACAGAGAAGCTGCAGCTGTTTTCAGACATGTGTCTGGTGTCTGGTCACGAGGATACGAGCTTTCGCTCCCGCCTAATGCTGCGAGGTGACGCCTCAGACCTCCACCAGGGGGAGACACTGCTCAAGGGGACCATCACTGatgTGGAGAGTCTTCAGAACCTGTTGCTGTCTGGTGTGAGAGAGCCAGCTTCACGTCTAGAGGAGGGTTCAGGATCCGGGGCTCTGCCCAGGAGAGCAGACACCTTCGGGGGCTATGACAGCAGGCCCATCATCCTCAACAAGAGCATTGTGAAGAAGAAGAACCACAGTGGAGGGGACAGGGCCAGAGACGAGACCCAGAAAGGCTGCTCTGACCCCCAGCTTACGAAGATCCAGGCTAGTCAGACCTTGGAGCAGCCACAGGctgatgatgatgaggaagaggCCTCTCCAGCCACCTGGAGCCCCATCTGGTCTAACACCTTCCCTGAGGCTGAGTTCTTTGACCGGGTGCTGATGCTGTCCCAGAGACTCTACAGCCTGCAGGCCATCATCGCCAAGCAGGACAGCCACATCGAGCTACAACGCGCCTCCCTCACCGAGCGCGCCTCCTTCCCTGGCCGTCACCGCGGCAACGTTCTCCTGGAGCAGGAGAAACAGAGGACGCTGGCCCTGCAGAGGGAGGAGCTGGCCAGCTTCCACAAGCTGCAGTCACAGCACCGTCAGGAGCAGGCTCGctgggagagggagcgggagcgCCACCGGCTGCAGGCCGAGGTCACAGAAGGGATGCTGAGGCAGAGAGAGGACGACTGCAGGAGGCTGGAGGAGAAGCTGGCGGAAGAGAGGGAGgacctggagagacagagagagacgtacCAACAGGATctggagagactgagggagtCGACCCGCAcagtggagaaggagaaggaacgCCTGGAGCAGCAGAGGAAGATCAAGAGGAAGACCATTGAGGTGATGCCCTTCTCTGGCAGTCTAAATGGGGATCTCCTTCTGGGCGTGGGCAGTAGCTGCAGCGTCGGCTCagacctctccctcccccagaaGGCCCTGGTTCGTTCTAGCCCTTCTGTGGCGCCCGCAGACTACCTGGAGCGTCCTGAGGTTCTGGCTCGGGGTCAGAGCGCCAACGCCACGGCGCTGCCGGTGAAGAAGGAGGTGCCCCTCCACCTGTGCAGCACCACCAACCAGCAGCACAAGCAGGTGGGTGTCCAGCAGCAGATCCCCACCAAGCTGGCAGCCCTGAGCTCAAAGAGTTCGAAGAGTGCCAAGGCCACCCACCGCACCGACAGCACAGcctctctgGATATGAAGCAAATGCTGCCTATGAAGTTGTCAGCCAAAGAGGACGGCACTCTGAAAGCCAAGCGCTCCATCAGCCCTAACCAGCAGCTTCCTCACACCCTAGTCCACTCCCAGTCCATGCACttgacagTTTCATCGAGCCTTCCAGACAGGGGGCCAGAGAACCAGCCCGCCGGCCTACAGAAGCCCCCCAGCCAGGCCTCCAACCCCCTGCACATTCACACCCAGCCCCAGGCTCCTAACCCCCTCCATACCCAGAGCCCTAACCCCCCTCCAGCACAGGCCCCTGTCCACAGCCACAGCCTGCCCCCGCCATGCAGGATCCCTGAGGATGTAATCTTCTTCTGAGCCCCCCGTCCCCCCCCCACGGCAGTCAGGGACCAAAGGGAGGCCTGTGATGTCACATCTCTAGAAACCGTTCAGATCTGGGACGCAACAcgtttcctttaaaaaaaaaaagtaatttaaaacatttaaaaaagataACTCTGTTCATTCTTAGAAGAATCTATATAATCACGTCTCCCTAAAACTAATTCCAATAATTGTTTTGAATCATTTGTTTTATTGAACCGCCGATTGTTGAATATGAAGAAAGACGACTATGATTAATATGAAGGTTTATTTTAAACATGAAGGGGTCACGTGACGCTCTGGACAAATCcagaaaggagaggggggagcgagATTGGAGAGCGAGATTGGAGAGCGAGATTGGAGAGCGAGATTGGAGAGCGAGATTGGAGAGCGAGATTGGAGAGCGAGATTGGAGAGCGAGATTGGAGAGCGAGATTGGAGAGCGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU518293 lncRNA downstream 440 93298088 ~ 93300050 (-) True G457578
TU518292 lncRNA downstream 484 93297401 ~ 93300006 (-) False G457578
TU518426 lncRNA downstream 7512 93292716 ~ 93292978 (-) True G457697
TU518424 lncRNA downstream 7990 93292025 ~ 93292500 (-) True G457696
TU518419 lncRNA downstream 16260 93283996 ~ 93284230 (-) True G457692
TU518513 lncRNA upstream 140498 93551096 ~ 93551828 (-) True G457772
TU518514 lncRNA upstream 141292 93551890 ~ 93552354 (-) True G457773
TU518533 lncRNA upstream 170689 93581287 ~ 93581578 (-) True G457789
TU518551 lncRNA upstream 206505 93617103 ~ 93617530 (-) True G457805
TU518567 lncRNA upstream 243020 93653618 ~ 93658412 (-) True LOC110524842
XM_021604753.2 mRNA downstream 60812 93225313 ~ 93239678 (-) True lonp1
XM_036978840.1 mRNA downstream 89391 93189533 ~ 93211099 (-) True lmnb2
XM_021604751.2 mRNA downstream 121983 93170834 ~ 93178507 (-) True commd2
XM_021604750.2 mRNA downstream 121989 93170834 ~ 93178501 (-) False commd2
XR_005051901.1 mRNA downstream 121989 93170834 ~ 93178501 (-) False commd2
XM_036978848.1 mRNA upstream 19603 93430201 ~ 93612439 (-) False insrb
XM_036978849.1 mRNA upstream 19603 93430201 ~ 93612439 (-) True insrb
XM_021604762.2 mRNA upstream 229866 93640464 ~ 93652540 (-) True use1
XM_036978850.1 mRNA upstream 242265 93652863 ~ 93702545 (-) False LOC110524842
XM_036978851.1 mRNA upstream 242265 93652863 ~ 93702545 (-) False LOC110524842
TU518311 other downstream 280210 93018394 ~ 93020280 (-) True G457595
TU518230 other downstream 333498 92950678 ~ 92966992 (-) True G457537
TU518227 other downstream 356965 92940506 ~ 92943525 (-) True G457534
TU518163 other downstream 368851 92927205 ~ 92931639 (-) False G457491
TU518477 other upstream 31302 93441900 ~ 93442413 (-) True G457740
TU518479 other upstream 51754 93462352 ~ 93463079 (-) True G457742
TU518683 other upstream 450248 93860846 ~ 93863614 (-) True G457909
TU520343 other upstream 2148092 95558690 ~ 95559210 (-) True G459282
TU520386 other upstream 2191825 95602423 ~ 95602927 (-) True G459323

Expression Profile