RNA id: XR_002473667.2


Basic Information

Item Value
RNA id XR_002473667.2
length 2755
RNA type mRNA
GC content 0.48
exon number 9
gene id si:dkeyp-82a1.6
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 93705716 ~ 93709937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATGTGTTTCCAACGAAATCTGTTGAACGTACAACTTATTTCctgttttgttaaaaaaaaaaaaacgacccATCCTAGGAAATGCGTTTGAGAAGTTGCGCTATAGGGTGAATATTTAATTTGCGCTATAAGGTATAATTTAGAGTGGAACCATGGATCCTGAGATTTTACGAAACAACTCTGCTCAACCAGCGAGGAGGTCGACAAGGCAATCGATGAAAGCAGTTACTTTAGAGTTGGCACCCAGAGGTccgctgaagaggaggagggaagagatcAAGCTCCCATCCACACCTGTCAATGGCTCCATGGAGGACGATGAGTCCCCTGGCAAGAAGAATAAGTCAGAGATTGGAGTGGCAGGGGATGGCAGTTGTGATGAGGATGAGATGGATGTCCAGGAGACCACTGGGGATGAAGATCTGGACTCGGAGCAGAACGAGGAACAGGAGATGAGTGCCGAGGAAGACTCCTCCCATCACAATGTCACACAGCATAAACGTCCCTTTGATACAACTTTGATGGGGCACATGAATGTGAACGTACCGAAGACGGTCGGTGTTGGCTCCCAAGAGATTGTAGATCCCAGGTTGTACCTACTGAGTCGCAGTTCCATTCATACAACCGAGGAGCTGAAAACAGATCTGTTTAAAACCAAGAGAATGGACATGTCAAGAAGAGCTGCGTCTGGTACCAAGACTGCAACCCAACTCAGACCCCTGGAGAACCGACCAGAGGTTTTGATTTACAAGACTAGCAGCATGGCACAGTACAAGGAGAATATGGAGAGGAAAGGCAAAAAAACTGGATTGCCCAGCGCTAACCATTATAGCATGAGAGGTTACCCCACCTCTGAAGAGTCCTACACATCGAGCTGTCGGGTGAACAATATTCCTACTCGAAAACAAACTACCAAACTCAGAAAACAAGATATTAAGAAAtcagctgttatcaaggcaattCCTGGGAAAGCTTTTGGGGGGTACATGTGGAAACTGTGTCAGGCTCTGGTGCTGCTTGTCTCTGGTGTTCTGGGTCTCCTGGCCTACCAGCACTTCTCACTGCCCTTCGGACCTTCAGGGGGTGGAGATCATCCAGCCTGGCCTGTGAGAGAGGGGAAGTTTGTTTCTCAGTTATCTGCTCTGGAGGCCCTGTTCCCCGGGCAGCGCTCTGAGCTGTGGAGGAGGAGCAGGATCCACCTGGAGAGGCACCTCCAGACGGCCCGGCCAACGGAGCCAGTCAGCCTGATGCTGACAGCAGGCCGCAGGGGGGAGAAGACGCTGCACTGCCTTGCCCTGCATCTGGCCTCCGCCTTCTCCTCTGCCCTCAACGCCTcctccatccacatcgacggggccagCAAAGCTGGCCAGGACAGCGACCAGGTCAAGCTGGACATCGACACCCAGCTGGGGGAAGCCTTCGAGGGGGACCAGCCCGTAGCCGTCATCCACCGCTTCGAGGAGCTGCCCCCAGGTTCCACGATCATATTCTACCGCTACTGTGACCACGAGAACGCAGCCTACAAAGAGGTGTTCCTGCTCTTCACCGTGCTGCTGCCTGAGGAGGAGTTAGGGAAGGAGCTCAGTCTGAATGAGGTTGAGGAGAGGGTCCAGgattatattacagacacctttGTGGAAAGTAACAGCTCAGACAAGCCTGGTTCCTATAATCGGATGGACCTGGACAAGCTGAGTGGACTATGGAGCCGTATCTCCCACCTGGTCCTGCCTGTggcagtagaggagaggatagagcagggaggATGCATGGACTGAACTGGCAGCTACAGGAGACGTCTGGCTAGGTAGGAGCAGGCTCGCTGGGCTGGGCTCCTCTCCGTCTTTATGGAGCTCTGGAGAAGCTGTGGCTCTGTAGCTGAGGGGTGATGGTATGAAGACACACCCAGGTGCTCTGTGGGGTTTTTAGACTTCACAGGTGAACTCTAGGACCTAGAGGTGATATCTTCCAGAGGTCATATGCTCTTAATAGAGATTTCTATGCTGACAGATCCAAACCAACATTTAACTGAGATGTCCTCTCTTTCTGGTCCTCTTGTCATATTTCTGATCATTTCACAACTGCCAGCTGCTGTAATTACAGAGTGACGGTCTGGGTTGAGGAATCGGGAAGTAATTACAGAGTGACGGTCTGGGTTGAGAAATCGGGAAGTAATTACAGAGTGACGGTCTGGGTTGAGGACATCAGTTTGTTGTGGGTGGTTTTTATTTCAGACCCAAAGTTTGCTTTATAGGGAAGATGTACAGCATTGATTTTTATAATATGATGTCTAATTTCACGTTTTTCTTGTTTTGTCTTTTCTACTGAAAATGAAATGAAATCGTTACCTTGAAAAAAAGATTCCTTTTGCTATTCAATTTAAAGTGTTTTGTTGATGCATGAAATTTAATCTGAGTCTAAATTCCAGGATTTCACCACTGATCCACGCATTGGTAAAATGACTAACTGAGTTCCTTTTCTGCTGTTCAACGCTCATGTATACATATTTTAAAAATATCATTTCAATACCTCCATTCCCTGCATATTTGGCTGAAATGTCTTGCACTAATTCTCTGGTTTTACATTTTCAACCAACCAGCTCACCTCGAGGATTGGCAGACATGAAGACGGAAATAATCGTAATTTGGGATGCTGCGTTAggtttgtctctctctatctatctctctcgctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU518568 lncRNA downstream 46636 93657232 ~ 93659080 (-) True G457817
TU518567 lncRNA downstream 47304 93653618 ~ 93658412 (-) True LOC110524842
TU518551 lncRNA downstream 88186 93617103 ~ 93617530 (-) True G457805
TU518533 lncRNA downstream 124138 93581287 ~ 93581578 (-) True G457789
TU518514 lncRNA downstream 153362 93551890 ~ 93552354 (-) True G457773
TU518607 lncRNA upstream 2058 93711994 ~ 93712330 (-) True G457855
TU518609 lncRNA upstream 3464 93713400 ~ 93713635 (-) True G457857
TU518610 lncRNA upstream 4043 93713979 ~ 93714253 (-) True G457858
TU518605 lncRNA upstream 7515 93717451 ~ 93717736 (-) True G457853
TU518625 lncRNA upstream 60803 93770739 ~ 93771088 (-) True G457872
XM_036978867.1 mRNA downstream 3171 93652863 ~ 93702545 (-) False LOC110524842
XM_036978881.1 mRNA upstream 99867 93809803 ~ 93934248 (-) True atf6
XM_036978889.1 mRNA upstream 363052 94072988 ~ 94094473 (-) False LOC110524879
XM_036978890.1 mRNA upstream 363052 94072988 ~ 94094473 (-) True LOC110524879
XM_036978902.1 mRNA upstream 385043 94094979 ~ 94099229 (-) True LOC110524878
XM_036978882.1 mRNA upstream 393663 94103599 ~ 94115079 (-) True LOC110524880
TU518479 other downstream 242637 93462352 ~ 93463079 (-) True G457742
TU518477 other downstream 263303 93441900 ~ 93442413 (-) True G457740
TU518311 other downstream 685436 93018394 ~ 93020280 (-) True G457595
TU518230 other downstream 738724 92950678 ~ 92966992 (-) True G457537
TU518227 other downstream 762191 92940506 ~ 92943525 (-) True G457534
TU518683 other upstream 150910 93860846 ~ 93863614 (-) True G457909
TU520343 other upstream 1848754 95558690 ~ 95559210 (-) True G459282
TU520386 other upstream 1892487 95602423 ~ 95602927 (-) True G459323
TU520966 other upstream 2477532 96187468 ~ 96187983 (-) True G459813
TU521206 other upstream 2750971 96460907 ~ 96464598 (-) False G460020

Expression Profile

XR_002473667.2 Expression in all Baseline Samples

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XR_002473667.2 Expression in each Bioproject

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XR_002473667.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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