RNA id: XM_036978882.1



Basic Information


Item Value
RNA id XM_036978882.1
length 3721
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110524880
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 94103599 ~ 94115079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGCCCAGGCAGTGTCATAACGATGAATTCCGGTCTTTGGCCGTTGTTGAAGTGTTGGttggtgtatatatatgtgtgcaCAGAGTACCAGAGAGCAGTATCATTTCATCCACTGGATCAGACTAGAAACATATCCTTTGGAGATTTACCTGCAAAAGAGCATCACATTTTAATCTTACAATGGACTTCTGCTCTGCATCACAGCAAGCCAGAAGCCCCAGCTCATGGATCACCCTCTTCCTCCTGTACACAGTTGTCACCATGTGCACTAGAGTAGAGGGCTGGTCCTACCATCACTCCAACAAAACTATGAACTGGGACACTGCTAGAAAGTGGTGCACGGAGCACTACACTGACATGGTGGCAATCCAGAACCGTGGAGAGATCTCCCACCTTAACAGCATCCTGCCCAGGCAGGCCAACTATTACTGGATAGGGATCCGTAAGGTGGACGACGTGTGGACCTGGGTGGGGACCAATAAGATCCTGACTAAAGAGGCAGAGAACTGGGCAGACGGGGAACCCAACAACGGGGGGAACAATGAGGACTGTGTGGAGATGTACAtcaagagagagaaggacacaggGAAGTGGAACGACGAGTCTTGTATGAAGAAGAAGACGGCTCTGTGCTTCACAGCCTCGTGTCAGAGCGACTCATGTTACCATGGAGAGTGTGTGGAGACCATCAACAGCCACCGCTGTAAATGCTCTGAGGGCTTCTACGGAGAGCAGTGTGAACACGTTGTTGAATGTAAGATGGAGGAGGTCACTGTCCCTGCTAATGCCAGTGTCAGTTGCTCTCACCCCAATGGGAATTTCTCCTTTGACTCGACGTGTCAGTATTCCTGTGAAGAGGGGTACCGGCTGAGCAGCTCCGGGCCTATGAGATGCACAGCCTCAGAATCATGGTCAGAACAGCCTCCCACGTGTGAATTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAGGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTACTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCGCAGTGTATTGCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTATGGAAGCAGCTGTAACTTTAGCTGCTCTGAGGGTTATATCCTCAAGGGGGCGATCACACTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAGGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTACTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCGCAGTGTATTGCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTATGGAAGCAGCTGTAACTTTAGCTGCTCTGAGGGTTATATCCTCAAGGGGGCGATCACACTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAGGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTACTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCGCAGTGTATTGCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTATGGAAGCAGCTGTAACTTTAGCTGTTCTGAGGGTTATATCCTCAAGGGGGCGATCACACTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAAGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTACTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCGCAGTGTATTGCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTATGGAAGCAGCTGTAACTTTAGCTGCTCTGAGGGTTATCTCCTCAAGGGGGCGATCACGCTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGTGGTCTTATGCAGTGAGCTGTATGAACCTGGGAAGGGTTCCATGGCCTGCTCCCATCCCCTGGGCTCCTTCAGCTACCTGTCCACCTGTACCTTTACCTGTGAGGAGGGCTATGAGAGGCTGGCCTCCAGCTCTGCTACCCTGCAGTGTGGAGCCTCGGGACAGTGGAACGACTCACAGCCgcagtgtgttgCTGTAAGCTGCCCTACCCTCCAGCAGCCACAGGATGGCGCTATCAGCTGTGGAGAAGACTTCACCTTTGGAAGCAGCTGTAACTTTAACTGCTCTGAGGGTTATATCCTCAAGGGGGCGATCACAGTGACCTGCACATCAGCTGCTGAGTGGAGTGAGGAGATACCACACTGTGAAGCTGTCCAGTGCCCCTCTCCTGTGGTTCCTCTGGGGGGTCAGGTCAGCTGTGAGGCCCCCTCACATCCCTGGGGCTCTGTCTGCAACTTCAGCTGTGATGAGGGCTACGATCACCAGGGGGCCCCAAACATGCAGTGTTCACGGTCAGGGGAGTGGAGCGCTGAAACACCTACCTGCACAGCCACACCTGAGCCTCCATTGAACCCCACTATCCTAGGCCTGGCAGCAGGGGGCGCTGTGTCATTATCTGGCCTGTCTCTGGCTGCATGGCTCCTCAAACGAATCAGACAGAAAGCTAACAAGTTTGATCTGAACAGCACCTCAGACATTGAGGAACCTTTACAGACCTACAGGAACAGCATCGACAGCCTGATATAGAGACCAACAACAATAACAGCAGGAACAACAGCAGGAACAACAGCAGGAACAACAGCAGGAACAACAGCAGGAACAACAGGCTGGCTCTGTTTTCAAAGAAGATCTGCTGGTCACACCTGGATCACAGTTCCTCAGTATTGTAATGTAGTAGGTTAGATAGCCTTGAATCGTCTGACTGGGAGAGAGGTGCTACGTTGAGTATACAGAATCATCTGTTCTCATGATGGTCCtacagaaaatgtattttttctccCAAAGGGAGTTTTGTATTGAACAAATTGTTCACCACTGGCTGGTATATGACCACAAGTCGACACATTTCTTATGATACTGATTTTGACAGCTATTTTATACAAACTACAGAAAGTTATATATTGTATTCCCCTGTATAATTATTTGTATTatcataaatatatttttatgatTTTACAGAACTGTGAAATCAATGCCTTTCAGTATTtaagatgtatttatttttaaaccacAGTCTGTGTGTTACAGAATTACATTTGATGTTGAAAAAGTGTCTTTTTAAATATAATAAACATTTCAAACATTGTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU518991 lncRNA downstream 99501 94002456 ~ 94004098 (-) True G458160
TU518989 lncRNA downstream 102506 94000542 ~ 94001093 (-) True G458159
TU518962 lncRNA downstream 143240 93959439 ~ 93960359 (-) True G458136
TU518702 lncRNA downstream 167160 93936211 ~ 93936439 (-) True G457925
TU518695 lncRNA downstream 194247 93907441 ~ 93909352 (-) True G457918
TU519082 lncRNA upstream 3022 94118101 ~ 94134771 (-) True G458221
TU519075 lncRNA upstream 17928 94133007 ~ 94133532 (-) False G458219
TU519076 lncRNA upstream 17928 94133007 ~ 94133532 (-) False G458219
TU519077 lncRNA upstream 17928 94133007 ~ 94133532 (-) False G458219
TU519078 lncRNA upstream 17928 94133007 ~ 94133532 (-) False G458219
XM_036978902.1 mRNA downstream 4370 94094979 ~ 94099229 (-) True LOC110524878
XM_036978889.1 mRNA downstream 9126 94072988 ~ 94094473 (-) False LOC110524879
XM_036978890.1 mRNA downstream 9126 94072988 ~ 94094473 (-) True LOC110524879
XM_036978881.1 mRNA downstream 169351 93809803 ~ 93934248 (-) True atf6
XM_021604800.2 mRNA downstream 393662 93705716 ~ 93709937 (-) True si:dkeyp-82a1.6
XM_021604840.2 mRNA upstream 50159 94165238 ~ 94173990 (-) False scyl3
XM_021604841.2 mRNA upstream 50159 94165238 ~ 94173993 (-) False scyl3
XM_036978891.1 mRNA upstream 50159 94165238 ~ 94174003 (-) True scyl3
XM_021604842.2 mRNA upstream 97397 94212476 ~ 94221154 (-) False LOC110524883
XM_036978884.1 mRNA upstream 120383 94235462 ~ 94286184 (-) False zgc:153916
TU518683 other downstream 239985 93860846 ~ 93863614 (-) True G457909
TU518479 other downstream 640520 93462352 ~ 93463079 (-) True G457742
TU518477 other downstream 661186 93441900 ~ 93442413 (-) True G457740
TU518311 other downstream 1083319 93018394 ~ 93020280 (-) True G457595
TU518230 other downstream 1136607 92950678 ~ 92966992 (-) True G457537
TU520343 other upstream 1443611 95558690 ~ 95559210 (-) True G459282
TU520386 other upstream 1487344 95602423 ~ 95602927 (-) True G459323
TU520966 other upstream 2072389 96187468 ~ 96187983 (-) True G459813
TU521206 other upstream 2345828 96460907 ~ 96464598 (-) False G460020
TU521633 other upstream 2665764 96780843 ~ 96782021 (-) True G460331

Expression Profile