RNA id: XR_005051915.1


Basic Information

Item Value
RNA id XR_005051915.1
length 3643
RNA type mRNA
GC content 0.49
exon number 8
gene id hs2st1b
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 94978892 ~ 95053916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTTGTTGGCGCACACAAGTAGTgtggtgcaataattgaataacatagatttctaaattGATTTTGCAATGCAAgaggtgtagtcagcctgttactATAATGTTCCTTCTTAATTGGCTTGTTAACGTTATAGAAAATGGTTTATTGTATAGATATGGCAACTAATCTCCTGCtgtgaaaaaaatgttttgctcgtTTTCTGTCCTTTTTGGCGGTGCGGGTTTTGCGTGATCATTCCCATGAAATGCCCTATCCTGGCAACCCTGCTTGAAAGCGCGCTGTGTGTTTAGCAGGCTGCTTTTCACCGGAGCACGGATGAAACTACGGACGGAGCAGAGAGAATTTGGACCGCGAAGAGAACAAGACCCAACGTTGAACTGATTTGATAAGTGTCAGATATTAAATTAGTGGGTAGTATTAGTTAGTTTTTTAATCCCTTGATAAGTGAACGCTAGTCTCGGACATTCCCATCGTTTGCGTGCATTGATGAACACAAGACTTGACTTCACCCTGTCTCTTATGAATATTGAATTCGCGGTATGAATTGTTTGCATCTGATAGTTTGATGGGGCTTTTAAGGATTATGATGCCTCCCAAGTTACAGCTTttgtctatgttggtttttggaGTGTCGATGCTCTTCATTGAAAACCAAATCCAGAAATTGGAGGAGTCGCGGGCAAAACTGGAGCGTACCATTGCCAGACACGAGGTGAGGGAGGTGGAGCAGCGCCACACCCAAGATGGCGTACGGGACACGCCGCCGCTGGCTGAGGCAGAGGACGTGGTTATCATATATAACAGAGTGCCCAAGACGGCGAGCACGTCGTTCACCAACATCGCCTACGACCTTTGTGGAAAGAACCACTTCCACGTTTTGCACATCAACACCACCAAGAACAATCCTGTCATGTCCTTACAAGACCAGGTGCGCTTTGTCCGAAACGTGACGTCCTGGAGAGCGATGAAGCCTGGGTTCTACCACGGACATGTGGCTTTCCTCGACTTCTCCAAGTATGGGGTGAGAGGTAAACCCGTTTACATCAACGTGGTCCGGGACCCCATCCAACGCCTCGTATCTTACTACTACTTCCTGAGGTTTGGAGATGACTACAGGCCTGGCCTTCGACGGAGAAAACAAGGTGACAAAAAGaccTTTGATGAGTGTGTGTCAGCAGGTGGTTCTGACTGTGCCTCTGAGAAGCTTTGGCTCCAGATCCCGTTCTTCTGCGGACACTACTCAGAGTGCTGGAATGTAGGCAGCAGGTGGGCCCTGGATCAGGCCAAGTATAACCTGCTGAATGAATATCTACTAGTCGGTGTGACAGAGGAGCTGGAGGACTTTATCATGATGCTGGAGGCAGCTCTGCCCCGCTTCTTCAAGGGTGCCACAGGCCTCTACAAAACAGGTAAGAAGTCCCACCTGCGTAAGACCACAGAGAAGAAGCCACCCACCAAGGAGTCCATCGCCAAGCTGCAGCAGTCCGACGTTTGGAAGATGGAGAACGAGTTCTACGAGTTTGCCCAGGAGCAGTTCCAATTTGTCAGAGCCCACGCCGTCCGGGAGAAGGACGGGGAACTCTACCTGCTGGCACAGAACTTCTTCTATGAGAAAATCTACCCCAAAGTGAACTAGGGTGGAACTGGGTTAACATCAGGCCAGGGGGATGTGCAGGTCTGGGCTAACATCAGGCCAGGTGGATGTTGATGAGGTCTGGGTTAACATCAGGCCAAGGGGATATAGATGAGGTCTGGGTTAACATCAGGCCAGGGGGATGTAGATGAGGTGTGGGTTAACATCAGGCCAGGTGGATGTGGAGGCCTGGGCTAACATCAGGCCAGAGGGGATGTTGATGAGGTCTGGGTTAACATCAGGCCAAGGGGATGTAGATGTGTTGATGAGGTCTGGGTTAACATCAGGCCAGGGGGGAGGGATGTTGATGAGGTCTGGGTTAACATCAGGCCAGGGGGATGTAGATGTGTTGATGAGGTCTGGGTTAACATTAGGCCAAGGGGGATGTTGATGAGGTCTGGGTTAACATCAGGCCAGGGGGATGTAGATGTGTTTATGAGGTCTGGGTTAACATCAGGCCAGGGGGGATGTTGATGAGGTCTGGGTTAACATCAGGCCATTTGGGATGTTGATGAGGTCTGGGTTAACATCAGGCCAGGGCGATATTGATGAGGTCATACACTGACCATTATTCACCCTGTTACACACGTCACAGAATGCCATCATAACAATTACTGTCTGACGTGTAGATGGGGACCTACTGTGTAGCTGTACTGGGTCTGGGGGATACTGTGCTGGTTTCATTGGTTCCTTGTTCTTCACTGTAGTTGTTGACCTCTACAAGGTATTTGAACAGGTCTCAAATCCAACATGGTGTCCTGTACTCCTCTGCAGCTGGCCACTTCTACAGGTTATTGAAGCCAGATCCAACATGGTGTCCTGTTCTTCTCTGCAGCTGGCCACTTCTACAGGTTATTGAAGCCAGATCCAACATGGCGTCCTGTACTCCTCTGCAGCTGGCCACTTCTACAGGTTATTGAAGCCAGATCCAACATGGTGTCCTGTTCTTCTCTGCAGCTGGCCACTTCTACAGGTTATTGAAGCCAGATCCAACATGGTGTCCTGTACTCCTCTGCAGCTGGCCACTTCTACAGGTTATTGAAGCCAGATCCAACATGGTGTCCTGTACTTCTCTGTAGCTGGCCACTTCTTCTACAGGTTATTGAAGCCAGATCCAACATGGTGTCCTGTTCTTCTCTGTAGCTGGCCACTTCTTCTACAGGTTATTGAAGCCAGATCCAACATGGTGTCCTGTACTTCTCTGTAGCTGGCCACTTCTTCTACAGGTTATTGAAGCCAGATCCAACATGGTGTCCTGTACTTCTCTGTAGCTGGTCACTTCTTCTAAAGGTTATTTAAGCCAGATCCAACATCTGACCTGCGTGTATCTACACAGAGGTcaataagcccccccccccccccccccccccctccactggGGACCTGCCTTGTGGTCTTCAGGCTCCAACTCAAAATGGCTGCCCAACCACAACCACATCGGACGACGTCCAGCAAAAGATTGTCTATTTTACGTttcgtaaaaaaacaaaaaaaatcaaacaaCACATGAGAAGGTCAATTGAAAAGAAAACAGGAGTATGTCAGAAACAGTTTGATCTGTTGTACAAAACGTCAGATCAAAGTGTCAGAAGGACAGTTTGCTGGCTCGTGTCAGAAGGACAGTTTGCTGGCTCGTGTCAGAAGGACAGTTTGCTGGCTCGTGTCAGAAGGACAGTTTGCTGGCTCGTGTCAGAAGGACAGTTTGCTGGCTCGTGTCAGAAGGACAGTTTGCTGGCTCGTGTCAGATGGACAGTTTGCTGGCTCGTGTCAGATGGACAGTTTGCTGGCTCGTGCCTAAGCTGGGCGACTGTGAAAGGGAGGTACTGTAGAGGAGGAAAGGGTGGCTTCAGCTCGGTGTGTTAAGGGCTGTTCATCTACATtgtgtgtgtacagtcgtggccaaaagttgagaatgacacacatGAATTTTcattctgctgcctcagtttgtatgatggcaatttgcatatactccataatgttatgaagagtgatcagatgaattgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU519781 lncRNA downstream 17002 94964177 ~ 94964422 (-) True G458846
TU519780 lncRNA downstream 17256 94963958 ~ 94964168 (-) True G458845
TU519779 lncRNA downstream 17561 94963593 ~ 94963863 (-) True G458844
TU519763 lncRNA downstream 34641 94946496 ~ 94946783 (-) True G458829
TU519731 lncRNA downstream 109078 94871800 ~ 94872346 (-) True G458798
TU519964 lncRNA upstream 72998 95126914 ~ 95127433 (-) True G459003
TU519965 lncRNA upstream 74387 95128303 ~ 95128753 (-) True G459004
TU520034 lncRNA upstream 97130 95151046 ~ 95186324 (-) True G459028
TU520045 lncRNA upstream 135103 95189019 ~ 95254704 (-) False G459039
TU520048 lncRNA upstream 135103 95189019 ~ 95259610 (-) True G459039
XM_036978903.1 mRNA downstream 118334 94828106 ~ 94863090 (-) False lmo4b
XM_036978884.1 mRNA downstream 695240 94235462 ~ 94286184 (-) False zgc:153916
XM_036978883.1 mRNA downstream 695240 94237881 ~ 94286184 (-) False zgc:153916
XM_021604842.2 mRNA downstream 760270 94212476 ~ 94221154 (-) False LOC110524883
XM_036978891.1 mRNA downstream 807421 94165238 ~ 94174003 (-) True scyl3
XM_021604809.2 mRNA upstream 57939 95111855 ~ 95124924 (-) True LOC110524856
XM_021604810.2 mRNA upstream 291232 95345148 ~ 95349127 (-) True sox14
trnap-ugg-7 mRNA upstream 643245 95697161 ~ 95697232 (-) True trnap-ugg-7
XM_036978908.1 mRNA upstream 645520 95699436 ~ 95722598 (-) False hdlbpa
XM_036978909.1 mRNA upstream 645520 95699436 ~ 95722598 (-) True hdlbpa
TU518683 other downstream 1117810 93860846 ~ 93863614 (-) True G457909
TU518479 other downstream 1518345 93462352 ~ 93463079 (-) True G457742
TU518477 other downstream 1539011 93441900 ~ 93442413 (-) True G457740
TU518311 other downstream 1961144 93018394 ~ 93020280 (-) True G457595
TU518230 other downstream 2014432 92950678 ~ 92966992 (-) True G457537
TU520343 other upstream 504774 95558690 ~ 95559210 (-) True G459282
TU520386 other upstream 548507 95602423 ~ 95602927 (-) True G459323
TU520966 other upstream 1133552 96187468 ~ 96187983 (-) True G459813
TU521206 other upstream 1406991 96460907 ~ 96464598 (-) False G460020
TU521633 other upstream 1726927 96780843 ~ 96782021 (-) True G460331

Expression Profile