RNA id: XM_036978920.1


Basic Information

Item Value
RNA id XM_036978920.1
length 2212
RNA type mRNA
GC content 0.53
exon number 11
gene id zgc:103559
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95931986 ~ 95957022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATCCACAGTATTCCACAGAATATCTGCACACAGACCAGACTTAAAAGCAGAGTCCGTTTGTTTTACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACCCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTGGTTCCACTCTTTAGACTAGCAGAACCCGTTGGTTCCACTCTTTAGACTAGCAGAACCCGTTGGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTTGTTCCACTCTTTAGACTAGCAGAACCCGTTTGTTCCACTCTTTAGACTAGCCCAGGTAGTCCTGCAGTAATGGAGCCTGGGTCGACCGTGAGTGCAGTGAGGAGTAGCAGGGTTCTGTGTGGCACAGAGATACGGCCTGCTCTGATTGTCATCAAGGAAGGAAAGATACACAAAATCCTCCCAGACTCCAGTGGTTCTACTGGGGATACTGCTGCTGGCTGTGAGGTGTTGGATGTGGGAGACCATCTGGTGATGCCTGGTATCGTGGACTGTCACGTCCATGTGAATGAACCGGGTCGCACCACCTGGGAGGGATTCTGGACTGCCACGAGGGCCGCTGCTGCAGGAGGGGTCACTACCATAGTGGACATGCCCCTCAACAGCATCCCGCCGACCACCACCCTGGATAACTTCCATGAGAAGATGGCAGCAGCGTCGGGAAAGTGTTTTGTAGACACTGCCTTCTGGGGAGGGGTCGTCCCTGGCAACCAGCTGGAGCTGCTCCCCATGATTCGGGCTGGGGTGGCTGGTTTTAAATGTTTCCTGATCCACAGTGGAGTTGAGGAGTTCCCTCATGTGACTGACGGGGATCTGCACATCGCCATGAAACAGCTACAGGGCACAGGGAGCGTTCTCCTGTTTCATGCTGAGAGGGATACCCCCCTGCCatcagggaaagaagagagggatgtCCCTCTGCCATCAGAGGAAGCAGgGGACACACCACTGCTTTCCATAGACCCCAAGGAGTACTCCACCTTCCTCAAGTCCAGACCAGATGTTATGGAGCTGGAGGCCATTCGAACTGTCACTGAGCTCTGCCTGAAATACCAgGTGCATTGCCACATAGTGCACCTGTCCTCTGCCCAGCCCCTGGCTCTGATCCAGGCTGCGAAGCAGGCCGGAGCCCCTCTGACGGTGGAGACCACCCATCACTACCTCAGCCTGTCTGCTGAACACATCCCTGCTGGGGCCACACAGTTCAAATGCTGTCCTCCTATCAGAGGGGTAGCTAACCAGGAGCAGCTGTGGTCTGCCCTGAAGGCTGGTCAGATTGACATGGTTGTGTCAGATCACTCCCCCTGCACACCAGACCTGAAGAGATTGGACAGTGGGGATTTCACTCAGGCCTGGGGAGGGATCTCCTCCTTACAGTTCGgtctgtctctgttctggaCGTCAGCCAGTAAGAAGGGTTTCACTCTGCCAGACGTGGTGAGGCTCCTCTGCCAGCGCACTGCACAACTCTGTCGCCTTGACAACCAGAAGGGGAGCCTTGTTCCCGGTCACGATGCAGACCTGGTCATATGGGACCCAGAGAAGGAGTTTGAGGTGAAAGACGCAAGTATACATCACAAAAATAAGctaaCTCCCTACCTGGGCCTGACGTTGCTTGGGGAGGTGAGTGTCACCATCGTCCGAGGCAGAGTGGTGTACAAGCAGGGTTCCTTCTCTCCTACGCCCCTGGGGAagcatctcctcctcccccaggggACGACCCAGGTCTCCCTGTGTGATGGAGAGAAGACCGAGGGGACCCAGGCCTCACGGTGATGGAGAGAAGACCGAGGGGACCCAGGCCTCACTGTGACTCCCTGGAAAACAGTGGCAAGACATGTTACCGAGGGGACAATCCTGGCTACATAAATACAATACAATTAAATAAATggaccatgggggggggggggggggggggggggcatgtgtgTCTCAAAGTTCATATGCTTGACTGTTGTTTTAAGATGTTTCAATAAACAAAGTAATCTCTTTCAAA

Function

GO:

id name namespace
GO:0000256 allantoin catabolic process biological_process
GO:0050897 cobalt ion binding molecular_function
GO:0004038 allantoinase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01466 allB; allantoinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU520716 lncRNA downstream 255 95931381 ~ 95931731 (-) True G459595
TU520688 lncRNA downstream 6813 95876462 ~ 95925173 (-) True G459567
TU520702 lncRNA downstream 26183 95902786 ~ 95905803 (-) True G459581
TU520709 lncRNA downstream 30584 95901056 ~ 95901402 (-) True G459588
TU520681 lncRNA downstream 58918 95870225 ~ 95873068 (-) True G459561
TU520883 lncRNA upstream 78798 96035820 ~ 96038994 (-) False G459738
TU520885 lncRNA upstream 78798 96035820 ~ 96038187 (-) True G459738
TU520924 lncRNA upstream 143525 96100547 ~ 96101294 (-) True G459776
TU520930 lncRNA upstream 160667 96117689 ~ 96120785 (-) True G459779
TU520927 lncRNA upstream 164612 96121634 ~ 96126775 (-) False G459778
XM_021604832.2 mRNA downstream 9607 95913874 ~ 95922379 (-) True dtymk
XM_036978908.1 mRNA downstream 209388 95699436 ~ 95722598 (-) False hdlbpa
XM_036978909.1 mRNA downstream 209388 95699436 ~ 95722598 (-) True hdlbpa
trnap-ugg-7 mRNA downstream 234754 95697161 ~ 95697232 (-) True trnap-ugg-7
XM_021604810.2 mRNA downstream 582859 95345148 ~ 95349127 (-) True sox14
trnap-ugg-8 mRNA upstream 883480 96840502 ~ 96840573 (-) True trnap-ugg-8
trnap-cgg-2 mRNA upstream 883742 96840764 ~ 96840835 (-) True trnap-cgg-2
XM_021604822.2 mRNA upstream 1199026 97156048 ~ 97157070 (-) False LOC110524866
XM_036979088.1 mRNA upstream 1203763 97160785 ~ 97161999 (-) True LOC118964738
XM_036978953.1 mRNA upstream 1216945 97173967 ~ 97192535 (-) False LOC110524862
TU520386 other downstream 329059 95602423 ~ 95602927 (-) True G459323
TU520343 other downstream 372776 95558690 ~ 95559210 (-) True G459282
TU518683 other downstream 2068372 93860846 ~ 93863614 (-) True G457909
TU518479 other downstream 2468907 93462352 ~ 93463079 (-) True G457742
TU518477 other downstream 2489573 93441900 ~ 93442413 (-) True G457740
TU520966 other upstream 230446 96187468 ~ 96187983 (-) True G459813
TU521206 other upstream 503885 96460907 ~ 96464598 (-) False G460020
TU521633 other upstream 823821 96780843 ~ 96782021 (-) True G460331
TU521666 other upstream 867213 96824235 ~ 96829153 (-) False G460354
TU522022 other upstream 1071497 97028519 ~ 97030389 (-) True G460623

Expression Profile