RNA id: XM_036979015.1


Basic Information

Item Value
RNA id XM_036979015.1
length 1054
RNA type mRNA
GC content 0.49
exon number 5
gene id si:ch211-121a2.4
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 100182927 ~ 100191165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCGTATCCGCAGACCCATCTCCAACGAAGAAGAAGAGCGCCTCTGTCTCCAGTCAGCAAGGAAAGGTGTCGTTTTCAAGACTGCAACAAACTGGTAGCTATTTGAGATGTCCAGGAGAAACAAGAAAACAATGGTTTAGAGGTATCTAAAGAAGATggggaagaatacaacccagagcacgaTGCATCATCTTCAGGGATCCAGGCAGAGAGAAAGGTGGAAGGAGACGGCTGGACTGACAATGACCACTGAAGGGGATCCCAGCCTCTCTGCCAAACTGCTGCAACTGGTGCTGCTGTCCACCTACTGGGGCATGCAGATCTGGTTTACCTGCATATCAAgctttgtgatggacaGCCACCTGAACAGACACACATTTGGTTTGATCCAGAGCAGACTGGTTCCGTTCTACCTTCACCTGGGCTCTCTCTGTGCCTTCCTCAACCTGACGCTGTTCGCTGTCTACCACCCTGCAGACCTGCTAGATGACAGAGAGGCCTTCCAGATTGGGGTATACTTCCTGTGTGTGTCGGTAGCAGCGGTCAACGCCCAGTGGTTCGGTCAGATGACATCAGAGATAATGGAAGACATGCATCTAATGGAGCAAGCACAAGGATTGGGCCAGGACATTGGTCTATCTACCAATAGGGAGGCTTACGCCAAGCTGTGTGAGACAGACGGTAGATACAGGCGTCTGTCTGGTCAGCTGTGGCTTTACAGACTGTTGTCTTCGCTGTGTAACATCTGCTGCATTACCTGCAATGCATACAGCCTGTACTACCTAGCAGAGAACCTTACTTCACTATAGCACAGTTACCAAATCTGCAGTATCTATTGGCTGGGGAAATATGGATGGTAAGTCCACGGGTGGCTGGAGTGAATGGTATCGACACATTAAAATCATGGTTTCATACTATTCACATTACTATGAGCCGCCCTACCCTCACCAGCCTCCCGTAGTTAAGTCCAGCAACACTCAGGTTTGTTCTTTTTCAAGCCATTTTAATCTTCTACTAGAGAGATGTATTTTATTAAACTAGAGGAGAGGCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525509 lncRNA upstream 7506 100167346 ~ 100175459 (+) True G463114
TU525503 lncRNA upstream 33311 100149214 ~ 100149654 (+) True G463109
TU525493 lncRNA upstream 40101 100135473 ~ 100142864 (+) True G463100
TU525011 lncRNA upstream 93916 100080477 ~ 100089049 (+) False G462762
TU525541 lncRNA downstream 33064 100224229 ~ 100225638 (+) True LOC110524906
TU525545 lncRNA downstream 35339 100226504 ~ 100227625 (+) False G463139
TU525548 lncRNA downstream 38095 100229260 ~ 100230232 (+) False G463139
TU525546 lncRNA downstream 38359 100229524 ~ 100230232 (+) True G463139
TU525556 lncRNA downstream 48528 100239693 ~ 100239918 (+) True G463146
XR_005051933.1 mRNA upstream 25819 100145603 ~ 100157146 (+) True LOC118964709
XM_036979004.1 mRNA upstream 781407 99374155 ~ 99401558 (+) False LOC110490602
XR_005051935.1 mRNA downstream 33046 100224211 ~ 100226348 (+) False LOC110524906
XM_036979025.1 mRNA downstream 229102 100420267 ~ 100449778 (+) False LOC110524909
XM_021604873.2 mRNA downstream 229182 100420347 ~ 100449778 (+) False LOC110524909
XM_036979026.1 mRNA downstream 229182 100420347 ~ 100449778 (+) True LOC110524909
XM_036979034.1 mRNA downstream 474982 100666147 ~ 100667320 (+) True LOC118964711
TU525518 other upstream 11068 100171137 ~ 100171897 (+) True G463119
TU525006 other upstream 96961 100066569 ~ 100086004 (+) False G462762
TU524704 other upstream 699005 99483383 ~ 99483960 (+) True G462549
TU524551 other upstream 804860 99374197 ~ 99378105 (+) False LOC110490602
TU525543 other downstream 35339 100226504 ~ 100230173 (+) False G463139
TU525578 other downstream 78396 100269561 ~ 100291594 (+) True G463164
TU525706 other downstream 288456 100479621 ~ 100482754 (+) True G463269

Expression Profile