RNA id: TU405188


Basic Information

Item Value
RNA id TU405188
length 956
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G357064
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19502 ~ 69804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtctatcaaataatattagagacagtagatgtagctgactgtcgtaatataatagagacagtaggtctagttggtctgtcataatataatagagcagtagatctagctgatctgtcatattataatacagacagtagatctagctggtctgtcatgttataaaagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctttaatagtataatagagacagtggatatagcttgtctgtcatattataactgagacagtagacctagctggtctgtcataatataatagagacagtagatctagctggtctttcaaattataatagagacagtagatctagctggtctgttatgctataaaagagacagtagatctagctggtctgtcatattataatagagacagaagacctagctggtctgtcataatataatagagaccgtagatatagctggtctgtcatattataatagagacagtagatctagctggtctttcatcttaaaagagagacagtaaatctagcttgtctgtcataatataatagagacagtagatctagctggtctgtcatattataaaagagacagtagatctagctggtctgtcatattataatagcgacagtaaatatagctggtctgtcatattataaaagagacagtagatctagctggtctgtcaaattataatagcgacagtaaatatagctggtctgccatattataaaagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgttatattataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctgttctgtcatatcatccaggtctgtgcccaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405262 lncRNA downstream 43556 113360 ~ 118405 (+) True G357109
TU405267 lncRNA downstream 72371 142175 ~ 143689 (+) True G357114
TU405230 lncRNA downstream 74035 143839 ~ 145934 (+) True G357078
TU405274 lncRNA downstream 79356 149160 ~ 152502 (+) True G357118
TU405276 lncRNA downstream 84938 154742 ~ 155312 (+) True G357120
XM_036976551.1 mRNA downstream 19244 89048 ~ 186339 (+) True palm2akap2
XM_036976548.1 mRNA downstream 155205 225009 ~ 285133 (+) False LOC110523064
XM_036976549.1 mRNA downstream 164720 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 190306 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 226822 296626 ~ 312598 (+) True LOC110524922
TU405294 other downstream 130913 200717 ~ 201642 (+) True G357136
TU405615 other downstream 341485 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 341485 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 341485 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 341485 411289 ~ 416443 (+) True LOC110523070

Expression Profile